Wall clock time and date at job start Sat Apr 11 2020 04:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47390 * 2 1 4 4 C 1.38260 * 120.00075 * 265.02506 * 3 2 1 5 5 C 1.38211 * 120.00008 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00175 * 359.79887 * 5 4 3 7 7 C 1.38211 * 119.99774 * 0.43545 * 6 5 4 8 8 C 1.38215 * 120.00244 * 84.99352 * 3 2 1 9 9 C 1.50702 * 119.99534 * 0.02562 * 8 3 2 10 10 C 1.52993 * 109.47549 * 84.97759 * 9 8 3 11 11 N 1.46901 * 109.47514 * 179.97438 * 10 9 8 12 12 C 1.46897 * 110.99980 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46760 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.46957 * 180.02562 * 13 12 11 15 15 C 1.34772 * 120.00282 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99485 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00257 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47001 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99938 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00231 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99843 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00267 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47239 * 60.00500 * 23 21 19 25 25 H 1.48505 * 109.47362 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47667 * 300.00772 * 23 21 19 27 27 H 1.08996 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47243 * 300.00266 * 1 2 3 29 29 H 1.09002 * 109.47062 * 60.00262 * 1 2 3 30 30 H 1.08998 * 109.47693 * 239.99554 * 2 1 3 31 31 H 1.09002 * 109.47062 * 119.99737 * 2 1 3 32 32 H 1.08001 * 119.99600 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.99444 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.99848 * 180.23501 * 6 5 4 35 35 H 1.08002 * 120.00200 * 179.80765 * 7 6 5 36 36 H 1.09003 * 109.46585 * 204.97857 * 9 8 3 37 37 H 1.08998 * 109.47220 * 324.97271 * 9 8 3 38 38 H 1.08998 * 109.46810 * 299.99497 * 10 9 8 39 39 H 1.08998 * 109.47259 * 59.99536 * 10 9 8 40 40 H 1.00894 * 110.99813 * 303.95190 * 11 10 9 41 41 H 1.09005 * 109.46862 * 299.99445 * 12 11 10 42 42 H 1.08996 * 109.47363 * 60.00168 * 12 11 10 43 43 H 1.08996 * 109.46730 * 299.99499 * 13 12 11 44 44 H 1.08996 * 109.47189 * 59.99885 * 13 12 11 45 45 H 0.97001 * 119.99881 * 359.97438 * 14 13 12 46 46 H 1.08996 * 109.47207 * 299.99596 * 17 15 14 47 47 H 1.08996 * 109.47075 * 60.00204 * 17 15 14 48 48 H 0.96996 * 120.00218 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1929 6 6 2.9491 4.0291 -0.0005 7 6 2.6255 3.4106 1.1924 8 6 2.1643 2.1072 1.1924 9 6 1.8063 1.4345 2.4925 10 6 3.0035 0.6252 2.9948 11 7 2.6547 -0.0300 4.2625 12 6 3.7830 -0.8184 4.7755 13 6 3.3822 -1.4846 6.0933 14 7 4.5076 -2.2705 6.6052 15 6 4.3843 -2.9492 7.7630 16 8 3.3416 -2.9090 8.3813 17 6 5.5418 -3.7580 8.2893 18 16 5.0683 -4.5448 9.8491 19 6 6.5626 -5.3983 10.2273 20 1 7.4091 -5.3267 9.5604 21 6 6.6522 -6.1620 11.3829 22 7 5.6208 -6.2489 12.1960 23 14 8.2362 -7.0674 11.7835 24 1 9.3463 -6.0895 11.9128 25 1 8.0748 -7.8055 13.0619 26 1 8.5469 -8.0275 10.6939 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.2576 1.5016 -2.1246 33 1 3.0771 3.8233 -2.1248 34 1 3.3052 5.0487 -0.0009 35 1 2.7285 3.9469 2.1241 36 1 1.5427 2.1906 3.2322 37 1 0.9577 0.7686 2.3355 38 1 3.2670 -0.1308 2.2551 39 1 3.8521 1.2911 3.1518 40 1 2.3450 0.6452 4.9452 41 1 4.0511 -1.5848 4.0482 42 1 4.6373 -0.1630 4.9444 43 1 3.1138 -0.7186 6.8207 44 1 2.5281 -2.1402 5.9239 45 1 5.3416 -2.3023 6.1109 46 1 5.8099 -4.5244 7.5622 47 1 6.3961 -3.1025 8.4582 48 1 5.6833 -6.7829 13.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:49 Heat of formation + Delta-G solvation = -34.101821 kcal Electronic energy + Delta-G solvation = -24574.980807 eV Core-core repulsion = 20947.915611 eV Total energy + Delta-G solvation = -3627.065197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18486 -39.18252 -37.16856 -34.99323 -34.32291 -32.87232 -32.42111 -30.41112 -29.81615 -28.73111 -26.65379 -25.45097 -24.35907 -23.18038 -22.37818 -21.84607 -20.70064 -20.34198 -17.84836 -16.84286 -16.79033 -16.28559 -16.21685 -15.92583 -15.57893 -15.14262 -14.79916 -14.55223 -14.44701 -14.15171 -13.97617 -13.89692 -13.81227 -13.43692 -13.20120 -13.01011 -12.71531 -12.53436 -12.36732 -12.29266 -11.96277 -11.75096 -11.67494 -11.60141 -11.39591 -11.04109 -11.03350 -11.02906 -10.97009 -10.76277 -9.81938 -9.41822 -9.19768 -9.05717 -8.96720 -8.88685 -8.84896 -8.23187 -6.49260 -6.20740 -3.91461 0.94767 0.99697 2.97097 3.11130 3.23994 3.26085 3.29399 3.34749 3.59194 4.04093 4.21259 4.33996 4.42149 4.51668 4.59038 4.67599 4.75060 4.76891 4.83101 4.93801 5.01572 5.04213 5.10397 5.14246 5.15657 5.19394 5.24433 5.28111 5.44097 5.52239 5.52751 5.61996 5.63492 5.67806 5.77475 5.80541 5.89322 5.90899 5.95209 6.11609 6.12640 6.14410 6.30105 6.51793 6.62579 6.64210 6.95992 7.59872 7.70228 8.35692 8.62089 9.24316 10.86640 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.028629 B = 0.001384 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.797538 B =20231.653248 C =20396.103091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.075 4.075 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.114 4.114 8 C -0.078 4.078 9 C -0.084 4.084 10 C 0.066 3.934 11 N -0.686 5.686 12 C 0.050 3.950 13 C 0.123 3.877 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.344 0.656 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.397 0.603 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 19.675 -28.711 35.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.075 4.075 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.132 4.132 8 C -0.079 4.079 9 C -0.121 4.121 10 C -0.063 4.063 11 N -0.318 5.318 12 C -0.080 4.080 13 C -0.002 4.002 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.162 0.838 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.231 0.769 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.042 19.120 -27.798 34.684 hybrid contribution 3.317 0.232 -0.496 3.361 sum -4.725 19.352 -28.294 34.603 Atomic orbital electron populations 1.21743 0.94541 1.01996 1.02102 1.20643 0.96443 0.92531 1.03251 1.19810 0.98782 0.96302 0.92588 1.21053 0.99838 0.95208 0.97515 1.21133 0.99949 0.94832 0.98086 1.21124 1.00597 0.99911 0.92626 1.21068 0.99404 0.94608 0.98169 1.19675 0.99554 0.94179 0.94498 1.20631 0.98877 0.99089 0.93525 1.21927 0.95964 0.96677 0.91723 1.60309 1.35791 1.29523 1.06168 1.22089 0.92118 0.97357 0.96396 1.21139 0.90072 0.95329 0.93637 1.45900 1.16636 1.51844 1.25066 1.20297 0.89384 0.78764 0.79754 1.90710 1.29504 1.61722 1.57088 1.23528 0.99114 1.01915 1.05832 1.85403 1.20775 1.59682 1.17453 1.22834 0.99710 1.34909 1.11069 0.90975 1.24987 0.97448 0.95989 0.95105 1.70006 1.29634 1.38457 1.12179 0.86226 0.82013 0.79453 0.77804 1.19960 1.20798 1.19945 0.92152 0.92299 0.92780 0.91190 0.90187 0.86185 0.86235 0.86212 0.86176 0.91036 0.89401 0.90627 0.95009 0.83754 0.90300 0.94550 0.91819 0.90643 0.76918 0.89185 0.89246 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.72 37.16 0.36 -0.49 16 2 C -0.09 -0.56 5.38 -27.88 -0.15 -0.71 16 3 C -0.07 -0.53 5.13 -104.62 -0.54 -1.07 16 4 C -0.12 -0.80 9.68 -39.58 -0.38 -1.18 16 5 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 6 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 7 C -0.11 -0.79 9.68 -39.58 -0.38 -1.18 16 8 C -0.08 -0.56 5.13 -104.62 -0.54 -1.10 16 9 C -0.08 -0.54 4.92 -27.89 -0.14 -0.67 16 10 C 0.07 0.45 5.49 -3.83 -0.02 0.43 16 11 N -0.69 -5.32 6.50 -113.78 -0.74 -6.06 16 12 C 0.05 0.42 5.80 -3.82 -0.02 0.40 16 13 C 0.12 1.42 5.94 -4.04 -0.02 1.40 16 14 N -0.74 -9.79 5.56 -60.29 -0.33 -10.12 16 15 C 0.53 10.00 7.85 -10.99 -0.09 9.91 16 16 O -0.52 -11.89 15.86 5.55 0.09 -11.80 16 17 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.36 6.80 -51.93 -0.35 0.01 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.38 8.05 -51.93 -0.42 -0.04 16 31 H 0.08 0.51 5.62 -51.93 -0.29 0.22 16 32 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 37 H 0.09 0.59 5.62 -51.93 -0.29 0.30 16 38 H 0.08 0.55 6.80 -51.93 -0.35 0.20 16 39 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.34 2.43 8.73 -39.29 -0.34 2.08 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -34.56 408.34 -11.49 -46.04 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.86 Total: 1.30 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.30 Total: -12.56 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.34 Total: -41.68 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.56 -11.49 -46.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.940 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds