Wall clock time and date at job start Sat Apr 11 2020 04:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47051 * 2 1 4 4 C 1.50705 * 109.46967 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00139 * 90.00167 * 4 3 2 6 6 C 1.38233 * 119.99661 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00410 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00313 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.46661 * 90.00474 * 8 7 6 10 10 C 1.46906 * 110.99888 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46897 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46684 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00137 * 180.02562 * 13 12 11 16 16 S 1.81003 * 109.47228 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99904 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99972 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99962 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99837 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00138 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47169 * 59.99648 * 21 19 17 23 23 H 1.48497 * 109.47082 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46934 * 299.99838 * 21 19 17 25 25 C 1.38237 * 120.00103 * 0.26348 * 7 6 5 26 26 C 1.38236 * 119.99450 * 270.01734 * 4 3 2 27 27 H 1.09000 * 109.47463 * 60.00158 * 1 2 3 28 28 H 1.09006 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47062 * 299.99832 * 1 2 3 30 30 H 1.08995 * 109.47215 * 239.99884 * 2 1 3 31 31 H 1.08997 * 109.46963 * 119.99860 * 2 1 3 32 32 H 1.08995 * 109.47205 * 59.99878 * 3 2 1 33 33 H 1.08997 * 109.47122 * 299.99762 * 3 2 1 34 34 H 1.07993 * 120.00129 * 359.97438 * 5 4 3 35 35 H 1.08006 * 119.99729 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47155 * 330.00523 * 8 7 6 37 37 H 1.08997 * 109.47111 * 210.00445 * 8 7 6 38 38 H 1.00902 * 111.00533 * 56.04452 * 9 8 7 39 39 H 1.09000 * 109.47033 * 300.00113 * 10 9 8 40 40 H 1.09001 * 109.46544 * 60.00058 * 10 9 8 41 41 H 1.09000 * 109.47486 * 299.99976 * 11 10 9 42 42 H 1.09001 * 109.47362 * 60.00699 * 11 10 9 43 43 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 44 44 H 1.09000 * 109.46978 * 300.00347 * 15 13 12 45 45 H 1.08996 * 109.47197 * 59.99985 * 15 13 12 46 46 H 0.97010 * 119.99929 * 179.97438 * 20 19 17 47 47 H 1.07998 * 120.00627 * 179.72604 * 25 7 6 48 48 H 1.08000 * 120.00849 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2377 1.4426 -1.1980 6 6 5.6200 1.4432 -1.1985 7 6 6.3116 1.4429 -0.0017 8 6 7.8187 1.4429 -0.0022 9 7 8.3083 2.8279 -0.0020 10 6 9.7768 2.8672 -0.0031 11 6 10.2480 4.3228 -0.0036 12 7 11.7125 4.3619 -0.0041 13 6 12.3550 5.5467 -0.0050 14 8 11.7207 6.5804 -0.0050 15 6 13.8614 5.5870 -0.0061 16 16 14.4190 7.3090 -0.0065 17 6 16.1641 7.0655 -0.0085 18 1 16.5697 6.0646 -0.0096 19 6 17.0175 8.1601 -0.0099 20 7 16.5231 9.3801 -0.0091 21 14 18.8676 7.9021 -0.0128 22 1 19.2593 7.1404 -1.2258 23 1 19.5512 9.2204 -0.0132 24 1 19.2631 7.1404 1.1991 25 6 5.6210 1.4367 1.1958 26 6 4.2386 1.4419 1.1963 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.6974 1.4424 -2.1331 35 1 6.1597 1.4437 -2.1341 36 1 8.1817 0.9293 -0.8924 37 1 8.1823 0.9289 0.8875 38 1 7.9330 3.3441 0.7796 39 1 10.1544 2.3629 0.8863 40 1 10.1529 2.3636 -0.8937 41 1 9.8704 4.8267 -0.8933 42 1 9.8718 4.8268 0.8868 43 1 12.2198 3.5351 -0.0045 44 1 14.2390 5.0833 0.8838 45 1 14.2377 5.0827 -0.8961 46 1 17.1196 10.1452 -0.0096 47 1 6.1613 1.4320 2.1309 48 1 3.6990 1.4411 2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:51 Heat of formation + Delta-G solvation = -36.685027 kcal Electronic energy + Delta-G solvation = -24034.127531 eV Core-core repulsion = 20406.950318 eV Total energy + Delta-G solvation = -3627.177213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96089 -39.16833 -37.11163 -35.56643 -34.19303 -32.42019 -31.92818 -31.25519 -30.02559 -28.37506 -26.62520 -25.45863 -24.19591 -23.07910 -22.33476 -22.09122 -20.83599 -20.34074 -17.86524 -16.96532 -16.41973 -16.28515 -16.01503 -15.86426 -15.54753 -15.10857 -14.80319 -14.75401 -14.69042 -14.24764 -13.99353 -13.81575 -13.74430 -13.56406 -13.19653 -13.04463 -12.58123 -12.54805 -12.48092 -12.13742 -12.09518 -11.77123 -11.61945 -11.47914 -11.35810 -11.12388 -11.07183 -11.03701 -11.03098 -10.76204 -9.81784 -9.41899 -9.23821 -9.05564 -9.00499 -8.88071 -8.75109 -8.22892 -6.49035 -6.20586 -3.91320 0.94877 1.09409 2.97340 3.11564 3.24118 3.25397 3.29354 3.37990 3.66701 4.17646 4.21414 4.29217 4.37934 4.47873 4.56833 4.62372 4.69829 4.70247 4.83800 4.92169 4.96002 5.10590 5.13575 5.14452 5.18617 5.22508 5.24855 5.29286 5.36071 5.36539 5.52502 5.62362 5.63335 5.72400 5.76699 5.77649 5.81643 5.90290 5.92509 6.07392 6.14529 6.27922 6.28706 6.50234 6.63215 6.68935 6.95881 7.59976 7.70578 8.35825 8.62533 9.24494 10.86814 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.049556 B = 0.001242 C = 0.001230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.884532 B =22532.143209 C =22758.679236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.081 4.081 5 C -0.119 4.119 6 C -0.093 4.093 7 C -0.088 4.088 8 C 0.100 3.900 9 N -0.681 5.681 10 C 0.049 3.951 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.110 4.110 26 C -0.119 4.119 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.346 0.654 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.119 0.881 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.980 -23.255 0.751 36.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.119 4.119 4 C -0.082 4.082 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.089 4.089 8 C -0.028 4.028 9 N -0.313 5.313 10 C -0.080 4.080 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.129 4.129 26 C -0.137 4.137 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.164 0.836 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.137 0.863 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -29.052 -21.246 0.068 35.991 hybrid contribution 2.382 -2.025 0.933 3.263 sum -26.669 -23.271 1.001 35.409 Atomic orbital electron populations 1.21796 0.95641 1.01752 1.01916 1.21503 0.95694 0.96028 1.02361 1.20654 0.90905 0.97405 1.02984 1.19905 0.95630 0.99401 0.93231 1.21039 0.94183 1.00960 0.97534 1.21026 0.93921 0.98443 0.97726 1.19727 0.94912 1.00925 0.93316 1.20864 0.90731 0.89755 1.01486 1.60351 1.07174 1.13025 1.50709 1.22116 0.87964 0.96618 1.01325 1.21133 0.80451 0.95573 1.03021 1.45900 1.06555 1.08826 1.78163 1.20298 0.89802 0.82939 0.75181 1.90711 1.68256 1.32674 1.47338 1.23528 0.93429 1.08502 1.04923 1.85411 1.04487 0.96693 1.96721 1.22834 0.91109 0.95474 1.59095 0.90980 1.24984 0.99590 0.94418 0.94510 1.70012 1.35700 0.97827 1.46767 0.86229 0.82897 0.77612 0.78794 1.19928 1.20794 1.19950 1.21039 0.94285 1.00121 0.97442 1.20983 0.94033 1.01114 0.97543 0.92643 0.92663 0.92673 0.91872 0.91914 0.91017 0.90978 0.86155 0.85875 0.90000 0.94229 0.83586 0.94489 0.90201 0.90636 0.91818 0.76923 0.89243 0.89184 0.92120 0.86335 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.26 16 2 C -0.12 -0.57 5.92 -26.73 -0.16 -0.73 16 3 C -0.08 -0.44 5.34 -27.88 -0.15 -0.59 16 4 C -0.08 -0.58 5.13 -104.62 -0.54 -1.12 16 5 C -0.12 -0.88 9.70 -39.59 -0.38 -1.26 16 6 C -0.09 -0.73 9.70 -39.59 -0.38 -1.11 16 7 C -0.09 -0.69 5.39 -104.62 -0.56 -1.25 16 8 C 0.10 0.72 5.81 -4.97 -0.03 0.69 16 9 N -0.68 -5.68 6.49 -115.06 -0.75 -6.42 16 10 C 0.05 0.41 5.80 -3.82 -0.02 0.39 16 11 C 0.12 1.45 5.94 -4.04 -0.02 1.42 16 12 N -0.74 -9.83 5.56 -60.29 -0.33 -10.16 16 13 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 14 O -0.52 -11.95 15.86 5.55 0.09 -11.86 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.11 -0.81 9.70 -39.58 -0.38 -1.20 16 26 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 38 H 0.35 2.81 8.72 -39.29 -0.34 2.47 16 39 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.40 4.00 8.47 -40.82 -0.35 3.66 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 417.07 15.07 6.29 6.29 Total: -1.00 -34.61 417.07 -11.78 -46.39 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.25 Total: 1.00 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.32 Total: -12.22 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.35 Total: -42.15 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.61 -11.78 -46.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.705 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds