Wall clock time and date at job start Sat Apr 11 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 C 1.50698 * 109.47351 * 120.00836 * 2 1 3 5 5 C 1.38256 * 119.99755 * 299.99361 * 4 2 1 6 6 C 1.38216 * 120.00037 * 180.02562 * 5 4 2 7 7 C 1.38255 * 119.99744 * 359.96154 * 6 5 4 8 8 C 1.38212 * 120.00300 * 359.97134 * 7 6 5 9 9 C 1.38208 * 120.00186 * 120.16991 * 4 2 1 10 10 C 1.50698 * 120.00333 * 0.03695 * 9 4 2 11 11 N 1.46892 * 109.47190 * 80.19321 * 10 9 4 12 12 C 1.46900 * 111.00115 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.47204 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.47263 * 180.02562 * 13 12 11 15 15 C 1.34767 * 120.00017 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00089 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00219 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47559 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00355 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00066 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00242 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00136 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99976 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46618 * 89.99879 * 23 21 19 25 25 H 1.48496 * 109.47174 * 209.99908 * 23 21 19 26 26 H 1.48500 * 109.46880 * 330.00067 * 23 21 19 27 27 H 1.09008 * 109.46988 * 299.99716 * 1 2 3 28 28 H 1.08997 * 109.47243 * 59.99240 * 1 2 3 29 29 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46793 * 240.00649 * 2 1 3 31 31 H 1.09001 * 109.46980 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47695 * 300.00483 * 3 2 1 33 33 H 1.09001 * 109.47222 * 60.00918 * 3 2 1 34 34 H 1.08002 * 120.00247 * 0.02562 * 5 4 2 35 35 H 1.08005 * 120.00025 * 179.97438 * 6 5 4 36 36 H 1.07999 * 119.99759 * 179.97438 * 7 6 5 37 37 H 1.08002 * 119.99812 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47511 * 200.19698 * 10 9 4 39 39 H 1.09008 * 109.47004 * 320.19133 * 10 9 4 40 40 H 1.00899 * 110.99977 * 303.95468 * 11 10 9 41 41 H 1.08995 * 109.47451 * 299.99820 * 12 11 10 42 42 H 1.09003 * 109.47183 * 60.00241 * 12 11 10 43 43 H 1.09004 * 109.46602 * 300.00267 * 13 12 11 44 44 H 1.08998 * 109.46917 * 59.99553 * 13 12 11 45 45 H 0.97003 * 119.99450 * 359.97438 * 14 13 12 46 46 H 1.09009 * 109.46536 * 299.99498 * 17 15 14 47 47 H 1.08996 * 109.47009 * 59.99321 * 17 15 14 48 48 H 0.97000 * 120.00209 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 1.2303 5 6 1.6985 -0.2383 2.4861 6 6 2.1596 -0.8896 3.6145 7 6 2.9542 -2.0139 3.4875 8 6 3.2868 -2.4869 2.2321 9 6 2.8298 -1.8322 1.1034 10 6 3.1978 -2.3442 -0.2654 11 7 4.3058 -1.5453 -0.8055 12 6 4.6919 -2.0165 -2.1422 13 6 5.8455 -1.1616 -2.6709 14 7 6.2302 -1.6312 -4.0042 15 6 7.2324 -1.0236 -4.6694 16 8 7.8157 -0.0877 -4.1644 17 6 7.6278 -1.5062 -6.0412 18 16 8.9925 -0.4950 -6.6666 19 6 9.2440 -1.2567 -8.2353 20 1 8.6287 -2.0923 -8.5347 21 6 10.2327 -0.7829 -9.0864 22 7 10.4209 -1.3523 -10.2582 23 14 11.2974 0.6620 -8.5684 24 1 12.4993 0.1603 -7.8548 25 1 11.7180 1.4235 -9.7718 26 1 10.5212 1.5505 -7.6665 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.0773 0.6396 2.5853 35 1 1.8991 -0.5205 4.5955 36 1 3.3149 -2.5226 4.3693 37 1 3.9072 -3.3654 2.1330 38 1 3.5040 -3.3878 -0.1928 39 1 2.3354 -2.2639 -0.9273 40 1 4.0696 -0.5644 -0.8225 41 1 5.0084 -3.0578 -2.0831 42 1 3.8398 -1.9335 -2.8169 43 1 5.5285 -0.1204 -2.7301 44 1 6.6977 -1.2442 -1.9963 45 1 5.7639 -2.3799 -4.4079 46 1 7.9440 -2.5477 -5.9827 47 1 6.7754 -1.4225 -6.7154 48 1 11.1116 -1.0209 -10.8531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123798920.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:54 Heat of formation + Delta-G solvation = -29.420427 kcal Electronic energy + Delta-G solvation = -25235.552998 eV Core-core repulsion = 21608.690802 eV Total energy + Delta-G solvation = -3626.862196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.34688 -39.28855 -36.92397 -35.77255 -34.48064 -32.43748 -32.02760 -30.24272 -29.89014 -27.81583 -27.57364 -25.62511 -24.93882 -23.91265 -22.39919 -21.62415 -20.47649 -20.22793 -17.90292 -17.07968 -16.88480 -16.40550 -16.06645 -15.76099 -15.41176 -15.02982 -14.96322 -14.76466 -14.43265 -14.30969 -13.98536 -13.89350 -13.67594 -13.51939 -13.18498 -12.82468 -12.79829 -12.71468 -12.44288 -12.42043 -12.22731 -11.83508 -11.65021 -11.58022 -11.52665 -11.26189 -11.02110 -11.00329 -10.88858 -10.60371 -9.85714 -9.55372 -9.20034 -9.05574 -9.02223 -8.96609 -8.78690 -8.49704 -6.91529 -6.28710 -4.00439 0.96723 1.05585 2.73586 2.98037 3.19149 3.33695 3.40824 3.51219 3.62572 4.10121 4.21434 4.31279 4.33686 4.43157 4.55645 4.65062 4.74953 4.75707 4.76759 4.81131 4.92185 4.94846 5.10394 5.10643 5.13827 5.19269 5.21344 5.27503 5.32209 5.40384 5.43255 5.56683 5.67187 5.69198 5.71367 5.78328 5.78489 5.81815 5.84378 6.01081 6.15412 6.18009 6.30281 6.43815 6.55225 6.66842 6.91546 7.59309 7.94297 8.41671 8.48958 9.17525 10.80466 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.001663 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.247512 B =16828.684360 C =17060.453491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.068 4.068 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.097 4.097 9 C -0.081 4.081 10 C 0.098 3.902 11 N -0.680 5.680 12 C 0.048 3.952 13 C 0.123 3.877 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.345 0.655 41 H 0.081 0.919 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.399 0.601 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.920 -1.733 26.391 34.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.204 4.204 4 C -0.068 4.068 5 C -0.134 4.134 6 C -0.136 4.136 7 C -0.144 4.144 8 C -0.116 4.116 9 C -0.081 4.081 10 C -0.031 4.031 11 N -0.312 5.312 12 C -0.082 4.082 13 C -0.002 4.002 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.233 0.767 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.354 -0.535 27.370 34.719 hybrid contribution -1.067 -0.673 -1.269 1.790 sum -22.421 -1.208 26.101 34.430 Atomic orbital electron populations 1.21846 0.94158 1.01973 1.02092 1.20237 0.96229 0.96318 0.95486 1.21887 1.01552 0.94734 1.02178 1.19718 0.97268 0.95086 0.94778 1.20928 1.00548 1.00017 0.91870 1.21139 0.98077 0.95922 0.98463 1.21136 0.98844 0.96987 0.97392 1.21028 0.98804 0.99857 0.91878 1.19590 0.97890 0.95776 0.94879 1.20873 0.92156 0.98089 0.91942 1.60397 1.39855 1.07804 1.23173 1.22127 0.96822 1.00160 0.89057 1.21142 0.97450 0.97725 0.83835 1.45850 1.37703 1.37148 1.18476 1.20265 0.78821 0.82452 0.86787 1.90709 1.52365 1.27549 1.68605 1.23277 1.04158 1.04721 0.95297 1.84800 1.40985 1.44833 1.20907 1.22320 1.23541 1.20777 1.00300 0.89389 1.24713 0.96066 0.96615 0.93914 1.69937 1.32663 1.40732 1.08360 0.86733 0.82135 0.83458 0.79524 1.19185 1.19945 1.15916 0.92372 0.92237 0.92613 0.90563 0.92171 0.92142 0.92321 0.86222 0.86229 0.86135 0.85943 0.89958 0.93875 0.83615 0.90063 0.94448 0.91810 0.90574 0.76733 0.88458 0.88469 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.01 37.16 0.33 -0.45 16 2 C -0.06 -0.40 2.41 -91.78 -0.22 -0.62 16 3 C -0.15 -0.89 9.01 37.16 0.33 -0.56 16 4 C -0.07 -0.50 4.78 -104.63 -0.50 -1.00 16 5 C -0.12 -0.81 8.71 -39.58 -0.34 -1.16 16 6 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 7 C -0.13 -0.89 10.05 -39.58 -0.40 -1.28 16 8 C -0.10 -0.74 9.67 -39.58 -0.38 -1.12 16 9 C -0.08 -0.63 5.39 -104.63 -0.56 -1.19 16 10 C 0.10 0.69 5.01 -4.98 -0.02 0.66 16 11 N -0.68 -5.47 6.48 -115.06 -0.75 -6.22 16 12 C 0.05 0.38 5.80 -3.82 -0.02 0.36 16 13 C 0.12 1.36 5.93 -4.04 -0.02 1.34 16 14 N -0.74 -9.17 5.56 -60.29 -0.33 -9.50 16 15 C 0.53 9.42 7.85 -10.99 -0.09 9.34 16 16 O -0.52 -11.30 15.86 5.55 0.09 -11.21 16 17 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 18 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 20 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 23 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 27 H 0.06 0.30 7.39 -51.92 -0.38 -0.09 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.49 5.19 -51.93 -0.27 0.22 16 31 H 0.06 0.41 8.00 -51.93 -0.42 -0.01 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.33 7.39 -51.93 -0.38 -0.05 16 34 H 0.12 0.68 7.10 -52.49 -0.37 0.30 16 35 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.12 0.80 8.04 -52.49 -0.42 0.38 16 38 H 0.08 0.55 8.00 -51.93 -0.42 0.13 16 39 H 0.04 0.28 6.68 -51.92 -0.35 -0.07 16 40 H 0.34 2.76 7.54 -39.29 -0.30 2.46 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.40 3.72 8.47 -40.82 -0.35 3.38 16 46 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 47 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -34.16 404.00 -10.58 -44.74 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.88 Total: 1.46 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.86 Total: -11.10 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.31 Total: -41.52 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.16 -10.58 -44.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123798920.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.319 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds