Wall clock time and date at job start Sat Apr 11 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 N 1.46902 * 109.47075 * 179.97438 * 8 7 6 10 10 C 1.46900 * 111.00120 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47220 * 180.02562 * 10 9 8 12 12 N 1.46502 * 109.47442 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00570 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00400 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47331 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00042 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00144 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00232 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00184 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99623 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47230 * 90.00131 * 21 19 17 23 23 H 1.48502 * 109.46956 * 209.99841 * 21 19 17 24 24 H 1.48505 * 109.47436 * 329.99805 * 21 19 17 25 25 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 26 26 C 1.38230 * 119.99880 * 359.95582 * 25 6 5 27 27 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 32 32 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 33 33 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 34 34 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 35 35 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 36 36 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 37 37 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 38 38 H 1.00899 * 111.00505 * 303.95744 * 9 8 7 39 39 H 1.09003 * 109.46962 * 300.00073 * 10 9 8 40 40 H 1.08995 * 109.46841 * 60.00145 * 10 9 8 41 41 H 1.09004 * 109.47266 * 300.00255 * 11 10 9 42 42 H 1.09005 * 109.47424 * 60.00005 * 11 10 9 43 43 H 0.97003 * 119.99693 * 359.97438 * 12 11 10 44 44 H 1.09004 * 109.46956 * 299.99930 * 15 13 12 45 45 H 1.08995 * 109.47042 * 59.99479 * 15 13 12 46 46 H 0.97000 * 119.99736 * 180.02562 * 20 19 17 47 47 H 1.08008 * 119.99983 * 179.97438 * 25 6 5 48 48 H 1.08007 * 119.99843 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 7 5.4763 6.8330 -0.0005 10 6 6.9448 6.8722 -0.0011 11 6 7.4161 8.3278 -0.0010 12 7 8.8806 8.3670 -0.0023 13 6 9.5231 9.5517 -0.0019 14 8 8.8889 10.5855 -0.0011 15 6 11.0295 9.5919 -0.0038 16 16 11.5871 11.3139 -0.0036 17 6 13.3322 11.0704 -0.0051 18 1 13.7378 10.0695 -0.0054 19 6 14.1857 12.1651 -0.0059 20 7 15.4893 11.9832 -0.0076 21 14 13.4841 13.8963 -0.0061 22 1 13.2990 14.3555 1.3940 23 1 14.4216 14.8102 -0.7069 24 1 12.1741 13.8996 -0.7055 25 6 2.7240 3.3755 1.1972 26 6 2.2628 2.0724 1.1971 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5598 -2.1325 33 1 2.9047 3.8844 -2.1324 34 1 3.0933 5.9619 -0.8899 35 1 3.0934 5.9618 0.8901 36 1 5.3501 4.9342 0.8901 37 1 5.3500 4.9342 -0.8899 38 1 5.1008 7.3490 -0.7820 39 1 7.3221 6.3685 0.8889 40 1 7.3213 6.3681 -0.8911 41 1 7.0388 8.8320 -0.8908 42 1 7.0396 8.8317 0.8892 43 1 9.3879 7.5402 -0.0026 44 1 11.4076 9.0871 0.8853 45 1 11.4053 9.0888 -0.8947 46 1 16.0857 12.7482 -0.0078 47 1 2.9041 3.8846 2.1326 48 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:56 Heat of formation + Delta-G solvation = -36.863593 kcal Electronic energy + Delta-G solvation = -23978.520880 eV Core-core repulsion = 20351.335924 eV Total energy + Delta-G solvation = -3627.184956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.02219 -39.30454 -37.32696 -35.40524 -34.23552 -32.43706 -32.03918 -31.33661 -30.14613 -28.57438 -26.66211 -25.59441 -24.06792 -23.15544 -22.46076 -22.31762 -20.79732 -20.46339 -17.88552 -16.76026 -16.68332 -16.34973 -16.17340 -15.96019 -15.64576 -15.26732 -14.97075 -14.58910 -14.47229 -14.29288 -14.08796 -14.00304 -13.70723 -13.64905 -13.33395 -13.20309 -12.79256 -12.76927 -12.48740 -12.21118 -12.01166 -11.83334 -11.71157 -11.60568 -11.38854 -11.26386 -11.20570 -11.17606 -11.00172 -10.60229 -9.85520 -9.54554 -9.32917 -9.02170 -8.96583 -8.93501 -8.87443 -8.49656 -6.91446 -6.28672 -4.00382 0.89752 0.99889 2.73439 2.98048 3.19471 3.32429 3.34420 3.51240 3.58698 3.97519 4.28659 4.31969 4.33790 4.51184 4.59450 4.60992 4.62746 4.72184 4.77100 4.82044 4.85245 4.92139 5.02426 5.07873 5.10523 5.10657 5.17149 5.21111 5.31536 5.39573 5.43170 5.46785 5.55429 5.65208 5.69625 5.70110 5.74416 5.78825 5.84957 6.01291 6.01586 6.20429 6.23189 6.45164 6.57297 6.60135 6.92507 7.59421 7.94416 8.41837 8.48965 9.17639 10.80606 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.045404 B = 0.001229 C = 0.001214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.540976 B =22772.678608 C =23050.905295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.085 4.085 7 C -0.079 4.079 8 C 0.067 3.933 9 N -0.687 5.687 10 C 0.050 3.950 11 C 0.123 3.877 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.111 4.111 26 C -0.117 4.117 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.344 0.656 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.399 0.601 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.123 0.877 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.875 -25.029 -0.853 38.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.085 4.085 7 C -0.117 4.117 8 C -0.062 4.062 9 N -0.319 5.319 10 C -0.080 4.080 11 C -0.002 4.002 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.129 4.129 26 C -0.135 4.135 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.162 0.838 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.233 0.767 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.141 0.859 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -30.804 -23.145 -0.172 38.531 hybrid contribution 1.235 -1.164 -0.905 1.923 sum -29.570 -24.309 -1.077 38.294 Atomic orbital electron populations 1.21748 0.94668 1.01749 1.02242 1.20551 0.96240 0.92681 1.02861 1.19911 0.99239 0.96301 0.93248 1.21017 1.00050 0.94896 0.97535 1.21047 0.99693 0.94822 0.97604 1.19816 0.99501 0.96010 0.93204 1.20564 0.94815 0.92569 1.03767 1.21922 0.94183 0.89036 1.01082 1.60317 1.07314 1.13783 1.50455 1.22088 0.88105 0.96432 1.01381 1.21154 0.80265 0.95737 1.03016 1.45859 1.06704 1.08787 1.77863 1.20268 0.89733 0.83062 0.75265 1.90708 1.68257 1.32687 1.47601 1.23276 0.93320 1.05037 1.05828 1.84795 1.06815 1.02486 1.97426 1.22325 0.88167 0.97678 1.58795 0.89391 1.24706 0.94127 0.99265 0.93143 1.69938 1.01926 1.31781 1.48099 0.86739 0.81201 0.83977 0.79965 1.19180 1.19930 1.15905 1.21078 0.99345 0.94775 0.97722 1.21033 0.99951 0.94933 0.97538 0.92570 0.92536 0.92366 0.91043 0.91075 0.86228 0.86180 0.90971 0.89867 0.90679 0.94971 0.83782 0.90228 0.94478 0.91760 0.90597 0.76737 0.88451 0.88464 0.91939 0.85908 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.89 37.16 0.37 -0.25 16 2 C -0.09 -0.40 6.06 -27.89 -0.17 -0.57 16 3 C -0.09 -0.56 5.13 -104.63 -0.54 -1.09 16 4 C -0.12 -0.76 9.70 -39.58 -0.38 -1.14 16 5 C -0.11 -0.76 9.70 -39.59 -0.38 -1.14 16 6 C -0.08 -0.58 5.13 -104.62 -0.54 -1.12 16 7 C -0.08 -0.48 5.60 -27.88 -0.16 -0.64 16 8 C 0.07 0.44 5.67 -3.82 -0.02 0.42 16 9 N -0.69 -5.19 6.50 -113.78 -0.74 -5.93 16 10 C 0.05 0.40 5.80 -3.83 -0.02 0.38 16 11 C 0.12 1.35 5.93 -4.04 -0.02 1.33 16 12 N -0.74 -9.26 5.56 -60.29 -0.33 -9.59 16 13 C 0.53 9.45 7.85 -10.99 -0.09 9.37 16 14 O -0.52 -11.30 15.86 5.55 0.09 -11.21 16 15 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 21 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C -0.11 -0.75 9.70 -39.58 -0.38 -1.14 16 26 C -0.12 -0.76 9.70 -39.59 -0.38 -1.14 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.34 2.32 8.73 -39.29 -0.34 1.98 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.40 3.81 8.47 -40.82 -0.35 3.46 16 44 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 47 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 48 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 414.39 15.07 6.24 6.24 Total: -1.00 -34.29 414.39 -11.25 -45.54 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.29 Total: 0.24 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.29 Total: -10.96 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.30 Total: -41.39 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.29 -11.25 -45.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.674 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds