Wall clock time and date at job start Sat Apr 11 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47399 * 2 1 4 4 C 1.50700 * 109.47003 * 239.99596 * 2 1 3 5 5 C 1.38237 * 120.00384 * 285.45199 * 4 2 1 6 6 C 1.38236 * 119.99876 * 179.81071 * 5 4 2 7 7 C 1.38234 * 119.99976 * 0.39898 * 6 5 4 8 8 C 1.38237 * 120.00152 * 359.85344 * 7 6 5 9 9 C 1.38233 * 119.99817 * 359.95918 * 8 7 6 10 10 N 1.46902 * 109.47172 * 120.00142 * 2 1 3 11 11 C 1.46900 * 110.99792 * 305.04725 * 10 2 1 12 12 C 1.46904 * 111.00053 * 181.09649 * 10 2 1 13 13 C 1.53001 * 109.46916 * 189.99906 * 12 10 2 14 14 N 1.46503 * 109.46930 * 180.02562 * 13 12 10 15 15 C 1.46497 * 120.00373 * 89.99616 * 14 13 12 16 16 C 1.34784 * 119.99445 * 269.99971 * 14 13 12 17 17 O 1.21277 * 119.99914 * 359.97438 * 16 14 13 18 18 C 1.50702 * 119.99549 * 179.97438 * 16 14 13 19 19 S 1.80999 * 109.46737 * 179.97438 * 18 16 14 20 20 C 1.76200 * 99.99693 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00585 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99742 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99839 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99873 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46988 * 59.99701 * 24 22 20 26 26 H 1.48495 * 109.46806 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46747 * 299.99954 * 24 22 20 28 28 H 1.08996 * 109.47469 * 60.00175 * 1 2 3 29 29 H 1.09008 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47009 * 299.99667 * 1 2 3 31 31 H 1.07995 * 119.99556 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.99986 * 180.23739 * 6 5 4 33 33 H 1.07996 * 119.99769 * 179.83648 * 7 6 5 34 34 H 1.08000 * 119.99896 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00071 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.47235 * 65.07932 * 11 10 2 37 37 H 1.09006 * 109.47421 * 185.07698 * 11 10 2 38 38 H 1.08995 * 109.47259 * 305.08107 * 11 10 2 39 39 H 1.08997 * 109.46683 * 309.99694 * 12 10 2 40 40 H 1.09004 * 109.46917 * 69.99646 * 12 10 2 41 41 H 1.09006 * 109.46697 * 299.99529 * 13 12 10 42 42 H 1.08992 * 109.47172 * 60.00214 * 13 12 10 43 43 H 1.08998 * 109.46858 * 89.99764 * 15 14 13 44 44 H 1.09004 * 109.47028 * 209.99923 * 15 14 13 45 45 H 1.08999 * 109.47091 * 330.00347 * 15 14 13 46 46 H 1.08995 * 109.47276 * 300.00183 * 18 16 14 47 47 H 1.08999 * 109.46751 * 59.99981 * 18 16 14 48 48 H 0.97007 * 119.99612 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.9620 -2.0888 -1.3099 6 6 2.4192 -2.7401 -2.4402 7 6 2.9543 -2.0138 -3.4876 8 6 3.0294 -0.6359 -3.4060 9 6 2.5686 0.0157 -2.2773 10 7 2.0197 -0.6925 1.1994 11 6 1.4526 -0.0996 2.4180 12 6 3.4880 -0.6894 1.2466 13 6 3.9644 -1.6229 2.3613 14 7 5.4286 -1.6194 2.4087 15 6 6.1319 -0.6513 3.2539 16 6 6.1287 -2.5069 1.6745 17 8 5.5465 -3.3085 0.9752 18 6 7.6349 -2.5029 1.7228 19 16 8.2767 -3.8018 0.6379 20 6 10.0072 -3.5767 0.8818 21 1 10.3628 -2.8054 1.5489 22 6 10.9134 -4.3908 0.2165 23 7 10.4801 -5.3311 -0.5962 24 14 12.7481 -4.1526 0.4756 25 1 13.0749 -4.3498 1.9106 26 1 13.4958 -5.1411 -0.3423 27 1 13.1316 -2.7781 0.0648 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5467 -2.6564 -0.4903 32 1 2.3608 -3.8167 -2.5039 33 1 3.3138 -2.5229 -4.3696 34 1 3.4478 -0.0685 -4.2242 35 1 2.6276 1.0922 -2.2133 36 1 0.3742 -0.2579 2.4312 37 1 1.8997 -0.5708 3.2934 38 1 1.6631 0.9697 2.4336 39 1 3.8828 -1.0338 0.2907 40 1 3.8430 0.3222 1.4432 41 1 3.5694 -1.2785 3.3171 42 1 3.6093 -2.6345 2.1646 43 1 6.2825 -1.0771 4.2459 44 1 7.0986 -0.4154 2.8090 45 1 5.5376 0.2588 3.3356 46 1 8.0066 -1.5340 1.3895 47 1 7.9661 -2.6870 2.7448 48 1 11.1135 -5.8998 -1.0615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271963708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:02 Heat of formation + Delta-G solvation = 1.294382 kcal Electronic energy + Delta-G solvation = -26819.129256 eV Core-core repulsion = 23193.598954 eV Total energy + Delta-G solvation = -3625.530302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95460 -39.27651 -37.55651 -35.30396 -32.75113 -32.40868 -30.80445 -30.63119 -29.26780 -27.92198 -26.80981 -25.87208 -25.38880 -23.17824 -22.49078 -21.82600 -20.04683 -19.10997 -17.64408 -17.04351 -16.51171 -16.49547 -15.66943 -15.59499 -15.27701 -14.78789 -14.69023 -14.49839 -14.31883 -13.86591 -13.69378 -13.28354 -13.20340 -13.17590 -12.86947 -12.66616 -12.54097 -12.41184 -12.35160 -12.18417 -12.06562 -11.85253 -11.66946 -11.44728 -11.02800 -11.02315 -10.97971 -10.84483 -10.75745 -10.70057 -9.79348 -9.30824 -9.04069 -8.81055 -8.64906 -8.62863 -8.41225 -8.19906 -6.47255 -6.19508 -3.89740 1.40333 1.51773 2.92582 3.11039 3.24335 3.26101 3.29816 3.55953 3.79722 3.96192 4.22354 4.51604 4.77813 4.86752 4.95689 4.99223 5.09399 5.09867 5.10748 5.14044 5.15414 5.24173 5.25722 5.29203 5.37436 5.46440 5.47818 5.53343 5.60629 5.62815 5.68265 5.70072 5.74679 5.91542 5.92715 5.99404 6.05227 6.07223 6.14455 6.16059 6.51106 6.57260 6.65291 6.67058 6.91195 6.94063 7.09728 7.57747 7.61231 8.36813 8.62008 9.25494 10.87822 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.002915 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.081601 B = 9604.120984 C =11054.239574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.125 3.875 3 H 0.045 0.955 4 C -0.086 4.086 5 C -0.084 4.084 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.123 4.123 9 C -0.120 4.120 10 N -0.531 5.531 11 C 0.018 3.982 12 C 0.041 3.959 13 C 0.124 3.876 14 N -0.626 5.626 15 C 0.082 3.918 16 C 0.531 3.469 17 O -0.509 6.509 18 C -0.150 4.150 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.764 14.155 3.532 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.063 0.937 4 C -0.086 4.086 5 C -0.102 4.102 6 C -0.135 4.135 7 C -0.135 4.135 8 C -0.142 4.142 9 C -0.138 4.138 10 N -0.256 5.256 11 C -0.130 4.130 12 C -0.088 4.088 13 C 0.000 4.000 14 N -0.362 5.362 15 C -0.062 4.062 16 C 0.319 3.681 17 O -0.382 6.382 18 C -0.301 4.301 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.737 12.324 2.358 24.237 hybrid contribution 2.336 2.083 1.076 3.310 sum -18.401 14.407 3.434 23.621 Atomic orbital electron populations 1.21892 0.93409 1.02974 1.01665 1.20507 0.95490 0.94491 0.87816 0.93683 1.19651 0.99903 0.94212 0.94852 1.20989 0.98270 0.93685 0.97272 1.21229 0.98444 1.00103 0.93743 1.21184 0.99074 0.94210 0.99034 1.21054 1.00320 0.94753 0.98025 1.20949 0.99559 0.99311 0.94007 1.61939 1.07516 1.54385 1.01715 1.22512 1.00885 0.96955 0.92648 1.22506 0.86728 0.98079 1.01516 1.21307 0.79468 1.01758 0.97439 1.47839 1.06044 1.35555 1.46794 1.21748 0.97920 0.91877 0.94663 1.20345 0.89422 0.79723 0.78602 1.90706 1.71129 1.37636 1.38749 1.23559 0.93690 1.06632 1.06198 1.85396 1.03433 1.39054 1.55436 1.22824 0.91192 1.22109 1.32257 0.91054 1.24985 0.99547 0.94488 0.94519 1.70014 1.35160 1.18525 1.26572 0.86240 0.82836 0.78133 0.78385 1.19951 1.20810 1.19961 0.92088 0.91411 0.92262 0.85452 0.86019 0.86209 0.86336 0.86753 0.90932 0.91074 0.95735 0.89566 0.95148 0.91134 0.89026 0.92689 0.90692 0.91724 0.89415 0.89355 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.73 37.16 0.32 -0.81 16 2 C 0.12 1.24 2.27 -68.86 -0.16 1.09 16 3 H 0.05 0.44 7.94 -51.93 -0.41 0.03 16 4 C -0.09 -1.02 3.48 -104.62 -0.36 -1.38 16 5 C -0.08 -1.09 8.86 -39.58 -0.35 -1.44 16 6 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 7 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 8 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 9 C -0.12 -1.40 9.67 -39.58 -0.38 -1.78 16 10 N -0.53 -5.52 4.10 -236.28 -0.97 -6.49 16 11 C 0.02 0.14 8.80 60.06 0.53 0.67 16 12 C 0.04 0.50 5.06 -3.82 -0.02 0.48 16 13 C 0.12 1.58 5.35 -4.04 -0.02 1.56 16 14 N -0.63 -9.10 2.87 -181.57 -0.52 -9.62 16 15 C 0.08 0.87 10.24 59.85 0.61 1.48 16 16 C 0.53 10.36 7.69 -10.98 -0.08 10.28 16 17 O -0.51 -11.83 15.44 5.56 0.09 -11.75 16 18 C -0.15 -3.12 4.71 36.01 0.17 -2.95 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.58 8.09 -51.92 -0.42 0.16 16 30 H 0.06 0.40 6.45 -51.93 -0.33 0.06 16 31 H 0.13 1.64 7.89 -52.49 -0.41 1.22 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.11 1.11 8.00 -52.49 -0.42 0.69 16 36 H 0.07 0.50 6.53 -51.93 -0.34 0.16 16 37 H 0.07 0.53 6.11 -51.93 -0.32 0.21 16 38 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 39 H 0.09 1.37 6.58 -51.93 -0.34 1.02 16 40 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 41 H 0.07 0.71 6.31 -51.93 -0.33 0.38 16 42 H 0.09 1.39 7.42 -51.93 -0.39 1.00 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 45 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 46 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 47 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 401.24 15.07 6.05 6.05 Total: -1.00 -34.38 401.24 -10.37 -44.75 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.77 Total: 1.62 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.74 Total: -11.59 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.76 Total: -41.72 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.38 -10.37 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271963708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.043 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds