Wall clock time and date at job start Sat Apr 11 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47399 * 2 1 4 4 C 1.50700 * 109.47003 * 239.99596 * 2 1 3 5 5 C 1.38237 * 120.00384 * 285.45199 * 4 2 1 6 6 C 1.38236 * 119.99876 * 179.81071 * 5 4 2 7 7 C 1.38234 * 119.99976 * 0.39898 * 6 5 4 8 8 C 1.38237 * 120.00152 * 359.85344 * 7 6 5 9 9 C 1.38233 * 119.99817 * 359.95918 * 8 7 6 10 10 N 1.46902 * 109.47172 * 120.00142 * 2 1 3 11 11 C 1.46900 * 110.99792 * 305.04725 * 10 2 1 12 12 C 1.46904 * 111.00053 * 181.09649 * 10 2 1 13 13 C 1.53001 * 109.46916 * 189.99906 * 12 10 2 14 14 N 1.46503 * 109.46930 * 180.02562 * 13 12 10 15 15 C 1.46497 * 120.00373 * 89.99616 * 14 13 12 16 16 C 1.34784 * 119.99445 * 269.99971 * 14 13 12 17 17 O 1.21277 * 119.99914 * 359.97438 * 16 14 13 18 18 C 1.50702 * 119.99549 * 179.97438 * 16 14 13 19 19 S 1.80999 * 109.46737 * 179.97438 * 18 16 14 20 20 C 1.76200 * 99.99693 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00585 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99742 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99839 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99873 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46988 * 59.99701 * 24 22 20 26 26 H 1.48495 * 109.46806 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46747 * 299.99954 * 24 22 20 28 28 H 1.08996 * 109.47469 * 60.00175 * 1 2 3 29 29 H 1.09008 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47009 * 299.99667 * 1 2 3 31 31 H 1.07995 * 119.99556 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.99986 * 180.23739 * 6 5 4 33 33 H 1.07996 * 119.99769 * 179.83648 * 7 6 5 34 34 H 1.08000 * 119.99896 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00071 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.47235 * 65.07932 * 11 10 2 37 37 H 1.09006 * 109.47421 * 185.07698 * 11 10 2 38 38 H 1.08995 * 109.47259 * 305.08107 * 11 10 2 39 39 H 1.08997 * 109.46683 * 309.99694 * 12 10 2 40 40 H 1.09004 * 109.46917 * 69.99646 * 12 10 2 41 41 H 1.09006 * 109.46697 * 299.99529 * 13 12 10 42 42 H 1.08992 * 109.47172 * 60.00214 * 13 12 10 43 43 H 1.08998 * 109.46858 * 89.99764 * 15 14 13 44 44 H 1.09004 * 109.47028 * 209.99923 * 15 14 13 45 45 H 1.08999 * 109.47091 * 330.00347 * 15 14 13 46 46 H 1.08995 * 109.47276 * 300.00183 * 18 16 14 47 47 H 1.08999 * 109.46751 * 59.99981 * 18 16 14 48 48 H 0.97007 * 119.99612 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.9620 -2.0888 -1.3099 6 6 2.4192 -2.7401 -2.4402 7 6 2.9543 -2.0138 -3.4876 8 6 3.0294 -0.6359 -3.4060 9 6 2.5686 0.0157 -2.2773 10 7 2.0197 -0.6925 1.1994 11 6 1.4526 -0.0996 2.4180 12 6 3.4880 -0.6894 1.2466 13 6 3.9644 -1.6229 2.3613 14 7 5.4286 -1.6194 2.4087 15 6 6.1319 -0.6513 3.2539 16 6 6.1287 -2.5069 1.6745 17 8 5.5465 -3.3085 0.9752 18 6 7.6349 -2.5029 1.7228 19 16 8.2767 -3.8018 0.6379 20 6 10.0072 -3.5767 0.8818 21 1 10.3628 -2.8054 1.5489 22 6 10.9134 -4.3908 0.2165 23 7 10.4801 -5.3311 -0.5962 24 14 12.7481 -4.1526 0.4756 25 1 13.0749 -4.3498 1.9106 26 1 13.4958 -5.1411 -0.3423 27 1 13.1316 -2.7781 0.0648 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5467 -2.6564 -0.4903 32 1 2.3608 -3.8167 -2.5039 33 1 3.3138 -2.5229 -4.3696 34 1 3.4478 -0.0685 -4.2242 35 1 2.6276 1.0922 -2.2133 36 1 0.3742 -0.2579 2.4312 37 1 1.8997 -0.5708 3.2934 38 1 1.6631 0.9697 2.4336 39 1 3.8828 -1.0338 0.2907 40 1 3.8430 0.3222 1.4432 41 1 3.5694 -1.2785 3.3171 42 1 3.6093 -2.6345 2.1646 43 1 6.2825 -1.0771 4.2459 44 1 7.0986 -0.4154 2.8090 45 1 5.5376 0.2588 3.3356 46 1 8.0066 -1.5340 1.3895 47 1 7.9661 -2.6870 2.7448 48 1 11.1135 -5.8998 -1.0615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271963708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:01 Heat of formation + Delta-G solvation = -19.533924 kcal Electronic energy + Delta-G solvation = -26820.032439 eV Core-core repulsion = 23193.598954 eV Total energy + Delta-G solvation = -3626.433485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.03537 -40.48706 -38.48782 -36.58814 -34.58613 -33.68133 -31.81404 -31.72724 -30.42290 -28.92653 -27.69375 -27.64646 -26.76718 -24.09964 -23.47257 -22.81613 -20.88655 -20.58674 -19.52624 -18.14127 -17.82830 -17.48135 -16.88839 -16.84897 -16.66916 -16.39996 -15.80804 -15.66865 -15.46552 -15.11355 -14.70428 -14.46585 -14.32543 -14.28016 -14.20084 -13.82770 -13.55704 -13.51671 -13.22034 -13.19008 -13.11436 -13.07555 -12.87071 -12.76386 -12.61135 -12.48503 -12.29703 -11.93448 -11.78986 -11.68815 -11.58306 -11.13014 -10.88089 -10.26788 -9.79196 -9.74144 -9.58987 -9.27952 -8.67477 -8.34424 -6.12990 0.44498 0.53791 1.25377 1.43516 1.45397 1.55075 1.59139 2.08424 2.27563 2.83496 2.99380 3.05286 3.27879 3.67719 3.73147 3.97746 4.01591 4.09881 4.16137 4.19868 4.25609 4.30572 4.31501 4.34126 4.42521 4.46235 4.54915 4.61835 4.67023 4.70881 4.72273 4.85022 4.88996 4.90757 4.92298 5.02230 5.12080 5.14861 5.18922 5.33693 5.40877 5.53732 5.57811 5.64542 5.67241 6.07965 6.10705 6.18817 6.19451 6.28884 7.06295 7.16815 8.74610 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.002915 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.081601 B = 9604.120984 C =11054.239574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.126 3.874 3 H 0.054 0.946 4 C -0.088 4.088 5 C -0.098 4.098 6 C -0.140 4.140 7 C -0.135 4.135 8 C -0.131 4.131 9 C -0.127 4.127 10 N -0.541 5.541 11 C 0.017 3.983 12 C 0.054 3.946 13 C 0.126 3.874 14 N -0.612 5.612 15 C 0.072 3.928 16 C 0.528 3.472 17 O -0.559 6.559 18 C -0.123 4.123 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.261 1.261 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.110 0.890 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.589 17.372 5.761 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.018 3.982 3 H 0.071 0.929 4 C -0.088 4.088 5 C -0.117 4.117 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.145 4.145 10 N -0.267 5.267 11 C -0.130 4.130 12 C -0.075 4.075 13 C 0.003 3.997 14 N -0.346 5.346 15 C -0.070 4.070 16 C 0.315 3.685 17 O -0.437 6.437 18 C -0.274 4.274 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.590 15.593 4.633 26.240 hybrid contribution 2.159 1.160 0.456 2.493 sum -18.430 16.753 5.089 25.421 Atomic orbital electron populations 1.21853 0.91803 1.02747 1.02911 1.20564 0.96639 0.94288 0.86671 0.92850 1.19942 0.99180 0.93785 0.95909 1.21031 0.99003 0.94586 0.97031 1.21414 0.99418 1.00428 0.94559 1.21413 0.99551 0.95011 0.99354 1.21380 1.00013 0.94582 0.98912 1.21274 0.99013 1.00520 0.93713 1.61898 1.06245 1.55483 1.03026 1.22600 1.01524 0.97537 0.91347 1.22232 0.88112 0.98137 0.99050 1.21420 0.78140 1.00553 0.99582 1.47833 1.06890 1.34518 1.45405 1.22093 0.98125 0.92253 0.94533 1.20174 0.88945 0.80337 0.79015 1.90694 1.71670 1.40084 1.41259 1.23373 0.94714 1.04275 1.05059 1.85612 1.04956 1.43353 1.58609 1.23162 0.91178 1.22528 1.32555 0.89933 1.26144 1.05292 0.93847 0.93862 1.70189 1.37133 1.19696 1.27775 0.85004 0.75581 0.78554 0.78859 1.18573 1.20389 1.18603 0.91505 0.92377 0.90335 0.86112 0.86157 0.85263 0.84326 0.84503 0.89746 0.90397 0.94525 0.93677 0.93791 0.87215 0.92031 0.90798 0.90865 0.88318 0.87674 0.87512 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.73 71.98 0.63 -1.28 16 2 C 0.13 2.31 2.27 44.17 0.10 2.41 16 3 H 0.05 0.90 7.94 -2.39 -0.02 0.89 16 4 C -0.09 -2.09 3.48 -19.86 -0.07 -2.16 16 5 C -0.10 -2.72 8.86 22.27 0.20 -2.52 16 6 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 7 C -0.14 -3.63 10.05 22.27 0.22 -3.41 16 8 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 9 C -0.13 -2.89 9.67 22.27 0.22 -2.68 16 10 N -0.54 -10.39 4.10 -901.45 -3.70 -14.08 16 11 C 0.02 0.21 8.80 127.69 1.12 1.34 16 12 C 0.05 1.26 5.06 86.30 0.44 1.70 16 13 C 0.13 3.02 5.35 86.38 0.46 3.48 16 14 N -0.61 -16.78 2.87 -846.75 -2.43 -19.21 16 15 C 0.07 1.27 10.24 127.77 1.31 2.58 16 16 C 0.53 20.73 7.69 87.66 0.67 21.40 16 17 O -0.56 -27.30 15.44 -3.02 -0.05 -27.35 16 18 C -0.12 -5.09 4.71 71.24 0.34 -4.75 16 19 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 20 C -0.55 -31.64 9.50 67.96 0.65 -30.99 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 24 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.94 8.09 -2.38 -0.02 0.92 16 30 H 0.08 0.81 6.45 -2.39 -0.02 0.79 16 31 H 0.12 3.37 7.89 -2.91 -0.02 3.35 16 32 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.14 2.42 8.00 -2.91 -0.02 2.40 16 36 H 0.08 0.87 6.53 -2.38 -0.02 0.86 16 37 H 0.08 0.86 6.11 -2.38 -0.01 0.84 16 38 H 0.04 0.39 8.13 -2.39 -0.02 0.37 16 39 H 0.04 1.45 6.58 -2.39 -0.02 1.43 16 40 H 0.04 0.90 8.12 -2.38 -0.02 0.88 16 41 H 0.11 1.79 6.31 -2.38 -0.02 1.78 16 42 H 0.06 1.89 7.42 -2.39 -0.02 1.87 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.36 6.44 -2.39 -0.02 1.34 16 45 H 0.10 1.14 8.07 -2.39 -0.02 1.12 16 46 H 0.11 3.95 7.40 -2.40 -0.02 3.94 16 47 H 0.11 3.99 8.11 -2.40 -0.02 3.97 16 48 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -79.20 401.24 3.10 -76.11 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.93 Total: 25.36 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 7.20 Total: -20.41 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -5.84 Total: -89.77 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -79.20 3.10 -76.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271963708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.573 kcal (2) G-P(sol) polarization free energy of solvation -79.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds