Wall clock time and date at job start Sat Apr 11 2020 04:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47074 * 2 1 4 4 C 1.52997 * 109.47049 * 239.99611 * 2 1 3 5 5 C 1.53006 * 109.47127 * 174.99763 * 4 2 1 6 6 N 1.46496 * 109.46995 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99642 * 180.02562 * 6 5 4 8 8 O 1.21636 * 120.00612 * 359.97438 * 7 6 5 9 9 C 1.47193 * 119.99851 * 180.02562 * 7 6 5 10 10 C 1.35624 * 123.18770 * 0.02562 * 9 7 6 11 11 S 1.70270 * 110.84250 * 180.02562 * 10 9 7 12 12 C 1.75597 * 92.62466 * 0.02562 * 11 10 9 13 13 C 1.34003 * 110.60184 * 359.71311 * 12 11 10 14 14 C 1.52020 * 123.45987 * 179.60632 * 13 12 11 15 15 C 1.53042 * 108.68905 * 17.67261 * 14 13 12 16 16 C 1.53164 * 109.20614 * 309.11177 * 15 14 13 17 17 H 1.08995 * 109.53849 * 310.50819 * 16 15 14 18 18 C 1.52994 * 109.61184 * 190.28940 * 16 15 14 19 19 C 1.51608 * 125.04525 * 179.97438 * 12 11 10 20 20 N 1.46500 * 109.47073 * 119.99627 * 2 1 3 21 21 C 1.36938 * 120.00237 * 274.99986 * 20 2 1 22 22 H 1.08003 * 119.99801 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00289 * 180.02562 * 21 20 2 24 24 N 1.31618 * 119.99755 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00141 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46855 * 90.00125 * 25 23 21 27 27 H 1.48499 * 109.47101 * 209.99799 * 25 23 21 28 28 H 1.48496 * 109.47224 * 329.99960 * 25 23 21 29 29 H 1.08998 * 109.47252 * 60.00193 * 1 2 3 30 30 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46959 * 300.00237 * 1 2 3 32 32 H 1.09001 * 109.46832 * 55.00084 * 4 2 1 33 33 H 1.08993 * 109.47194 * 294.99605 * 4 2 1 34 34 H 1.09001 * 109.46801 * 300.00272 * 5 4 2 35 35 H 1.09001 * 109.46998 * 59.99868 * 5 4 2 36 36 H 0.96998 * 120.00192 * 359.97438 * 6 5 4 37 37 H 1.07996 * 124.58317 * 359.96602 * 10 9 7 38 38 H 1.08994 * 109.81746 * 257.79298 * 14 13 12 39 39 H 1.08997 * 109.54776 * 137.38647 * 14 13 12 40 40 H 1.09003 * 109.51697 * 189.19330 * 15 14 13 41 41 H 1.09005 * 109.56224 * 69.05916 * 15 14 13 42 42 H 1.09002 * 109.47610 * 300.39076 * 18 16 15 43 43 H 1.09003 * 109.47534 * 60.39121 * 18 16 15 44 44 H 1.09003 * 109.47218 * 180.38966 * 18 16 15 45 45 H 1.09003 * 109.60294 * 316.43913 * 19 12 11 46 46 H 1.09006 * 109.59457 * 76.89511 * 19 12 11 47 47 H 0.97000 * 119.99922 * 95.00319 * 20 2 1 48 48 H 0.97000 * 119.99902 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 7 4.0531 -1.3035 -2.5101 7 6 5.3740 -1.3396 -2.7753 8 8 6.1607 -0.7987 -2.0216 9 6 5.8645 -2.0325 -3.9777 10 6 5.0458 -2.6550 -4.8618 11 16 5.9422 -3.3511 -6.1311 12 6 7.4692 -2.7962 -5.4650 13 6 7.2677 -2.1104 -4.3315 14 6 8.3923 -1.5046 -3.5072 15 6 9.6479 -1.4198 -4.3781 16 6 9.9062 -2.7843 -5.0241 17 1 9.8658 -3.5621 -4.2616 18 6 11.2860 -2.7867 -5.6850 19 6 8.8309 -3.0475 -6.0823 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8927 1.0407 2.4241 23 6 2.6123 -0.6615 3.5091 24 7 2.9263 -1.9383 3.4498 25 14 2.7914 0.2706 5.1180 26 1 1.5240 0.1794 5.8865 27 1 3.8963 -0.3225 5.9133 28 1 3.0962 1.6957 4.8331 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2054 34 1 3.8531 0.4370 -1.3574 35 1 3.9995 -1.0727 -0.4259 36 1 3.4258 -1.7351 -3.1110 37 1 3.9707 -2.7035 -4.7723 38 1 8.5921 -2.1311 -2.6380 39 1 8.1067 -0.5051 -3.1795 40 1 10.5017 -1.1421 -3.7601 41 1 9.5025 -0.6703 -5.1562 42 1 11.3261 -2.0065 -6.4452 43 1 12.0504 -2.5990 -4.9310 44 1 11.4646 -3.7563 -6.1499 45 1 8.8946 -4.0824 -6.4186 46 1 8.9782 -2.3762 -6.9284 47 1 2.2491 -1.6317 1.1527 48 1 3.2496 -2.3956 4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663005510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:30 Heat of formation + Delta-G solvation = -26.540087 kcal Electronic energy + Delta-G solvation = -26233.578482 eV Core-core repulsion = 22606.841187 eV Total energy + Delta-G solvation = -3626.737295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.08579 -38.69090 -36.57933 -35.65724 -34.36415 -32.28508 -31.33011 -30.75338 -29.19239 -28.08131 -26.41903 -25.02690 -23.74346 -23.06344 -22.37253 -21.28061 -20.24981 -19.48594 -18.38797 -17.72092 -17.22631 -16.82081 -15.59114 -15.30688 -15.03141 -14.73373 -14.51174 -14.22033 -14.16397 -13.90635 -13.64561 -13.47204 -13.31084 -13.00263 -12.92765 -12.57386 -12.47360 -12.32665 -12.02045 -12.00496 -11.58838 -11.54079 -11.52369 -11.06094 -10.97586 -10.89907 -10.77618 -10.72248 -10.60684 -10.46831 -10.27205 -9.97408 -9.63130 -9.57300 -8.91562 -8.85068 -8.74936 -8.43162 -6.92740 -5.72463 -3.01152 0.61904 1.31960 1.74067 1.89145 3.34590 3.46412 3.46928 3.52269 3.53995 4.29992 4.51344 4.53233 4.62214 4.63198 4.87979 4.98667 5.11552 5.21732 5.27025 5.31185 5.35049 5.37702 5.38578 5.41017 5.49946 5.58409 5.67419 5.71696 5.77590 5.82592 5.89531 5.94151 5.97638 6.07993 6.09017 6.18562 6.19406 6.35490 6.40775 6.45680 6.51848 6.69807 6.73339 6.87752 7.07405 7.67419 7.74406 8.40067 8.45845 9.57184 10.13806 10.48391 11.50213 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.002379 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.410231 B =11766.511052 C =13114.169930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.723 5.723 7 C 0.569 3.431 8 O -0.528 6.528 9 C -0.139 4.139 10 C -0.217 4.217 11 S 0.172 5.828 12 C -0.209 4.209 13 C -0.050 4.050 14 C -0.055 4.055 15 C -0.117 4.117 16 C -0.090 4.090 17 H 0.076 0.924 18 C -0.146 4.146 19 C -0.037 4.037 20 N -0.723 5.723 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.393 0.607 37 H 0.169 0.831 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -3.557 -25.535 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C 0.001 3.999 6 N -0.374 5.374 7 C 0.354 3.646 8 O -0.405 6.405 9 C -0.158 4.158 10 C -0.355 4.355 11 S 0.442 5.558 12 C -0.326 4.326 13 C -0.060 4.060 14 C -0.094 4.094 15 C -0.154 4.154 16 C -0.110 4.110 17 H 0.094 0.906 18 C -0.204 4.204 19 C -0.076 4.076 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.227 0.773 37 H 0.186 0.814 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.941 -3.870 -26.135 28.229 hybrid contribution -0.248 0.654 1.980 2.100 sum 9.693 -3.216 -24.155 26.225 Atomic orbital electron populations 1.22425 0.99151 1.00814 0.99955 1.20150 0.91862 0.95590 0.86011 0.93266 1.22063 0.93921 1.01775 0.99358 1.21472 0.94363 0.97174 0.86915 1.45986 1.06842 1.57029 1.27573 1.17603 0.82479 0.80072 0.84496 1.90800 1.55080 1.45668 1.48989 1.20243 0.93089 1.04583 0.97844 1.25395 1.04532 1.05038 1.00553 1.82807 0.95731 1.53257 1.24048 1.24654 0.98935 1.07756 1.01251 1.20430 0.92793 0.97986 0.94823 1.20544 0.90289 1.02276 0.96288 1.21701 0.97814 0.96636 0.99249 1.21197 0.93970 0.98483 0.97361 0.90591 1.21824 0.96056 1.01738 1.00741 1.20354 0.87827 1.01814 0.97605 1.42451 1.78084 1.10653 1.05338 1.19220 1.36462 0.93838 0.87327 0.91216 1.24727 1.02164 0.95977 0.98056 1.69655 1.50925 1.08707 1.28814 0.86215 0.77208 0.78883 0.84053 1.21848 1.21815 1.20764 0.94594 0.93543 0.92709 0.91980 0.91639 0.91708 0.89567 0.77321 0.81362 0.90079 0.88945 0.91124 0.91754 0.92575 0.92293 0.92629 0.90602 0.90324 0.78297 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.36 2.89 -67.93 -0.20 3.16 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 6 N -0.72 -10.31 5.52 -61.46 -0.34 -10.65 16 7 C 0.57 9.12 7.79 -12.62 -0.10 9.03 16 8 O -0.53 -10.42 14.61 5.25 0.08 -10.34 16 9 C -0.14 -1.83 5.97 -104.55 -0.62 -2.46 16 10 C -0.22 -2.20 10.35 29.80 0.31 -1.89 16 11 S 0.17 1.48 22.99 -107.50 -2.47 -0.99 16 12 C -0.21 -2.11 6.32 -35.35 -0.22 -2.34 16 13 C -0.05 -0.62 5.95 -102.82 -0.61 -1.23 16 14 C -0.05 -0.67 5.07 -27.21 -0.14 -0.81 16 15 C -0.12 -1.06 5.21 -26.62 -0.14 -1.19 16 16 C -0.09 -0.70 2.71 -90.46 -0.25 -0.95 16 17 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 18 C -0.15 -0.88 9.18 37.15 0.34 -0.54 16 19 C -0.04 -0.28 5.56 -27.36 -0.15 -0.43 16 20 N -0.72 -17.83 4.57 -53.42 -0.24 -18.07 16 21 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 25 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.82 7.75 -51.93 -0.40 1.42 16 36 H 0.39 4.28 6.94 -40.82 -0.28 3.99 16 37 H 0.17 1.28 6.97 -52.49 -0.37 0.91 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.30 6.94 -51.93 -0.36 0.94 16 40 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 41 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -32.72 396.61 -11.16 -43.88 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.03 Total: 9.67 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.82 Total: -9.47 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.14 Total: -56.50 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -0.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.72 -11.16 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663005510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.337 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds