Wall clock time and date at job start Sat Apr 11 2020 04:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47074 * 2 1 4 4 C 1.52997 * 109.47049 * 239.99611 * 2 1 3 5 5 C 1.53006 * 109.47127 * 174.99763 * 4 2 1 6 6 N 1.46496 * 109.46995 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99642 * 180.02562 * 6 5 4 8 8 O 1.21636 * 120.00612 * 359.97438 * 7 6 5 9 9 C 1.47193 * 119.99851 * 180.02562 * 7 6 5 10 10 C 1.35624 * 123.18770 * 0.02562 * 9 7 6 11 11 S 1.70270 * 110.84250 * 180.02562 * 10 9 7 12 12 C 1.75597 * 92.62466 * 0.02562 * 11 10 9 13 13 C 1.34003 * 110.60184 * 359.71311 * 12 11 10 14 14 C 1.52020 * 123.45987 * 179.60632 * 13 12 11 15 15 C 1.53042 * 108.68905 * 17.67261 * 14 13 12 16 16 C 1.53164 * 109.20614 * 309.11177 * 15 14 13 17 17 H 1.08995 * 109.53849 * 310.50819 * 16 15 14 18 18 C 1.52994 * 109.61184 * 190.28940 * 16 15 14 19 19 C 1.51608 * 125.04525 * 179.97438 * 12 11 10 20 20 N 1.46500 * 109.47073 * 119.99627 * 2 1 3 21 21 C 1.36938 * 120.00237 * 274.99986 * 20 2 1 22 22 H 1.08003 * 119.99801 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00289 * 180.02562 * 21 20 2 24 24 N 1.31618 * 119.99755 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00141 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46855 * 90.00125 * 25 23 21 27 27 H 1.48499 * 109.47101 * 209.99799 * 25 23 21 28 28 H 1.48496 * 109.47224 * 329.99960 * 25 23 21 29 29 H 1.08998 * 109.47252 * 60.00193 * 1 2 3 30 30 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46959 * 300.00237 * 1 2 3 32 32 H 1.09001 * 109.46832 * 55.00084 * 4 2 1 33 33 H 1.08993 * 109.47194 * 294.99605 * 4 2 1 34 34 H 1.09001 * 109.46801 * 300.00272 * 5 4 2 35 35 H 1.09001 * 109.46998 * 59.99868 * 5 4 2 36 36 H 0.96998 * 120.00192 * 359.97438 * 6 5 4 37 37 H 1.07996 * 124.58317 * 359.96602 * 10 9 7 38 38 H 1.08994 * 109.81746 * 257.79298 * 14 13 12 39 39 H 1.08997 * 109.54776 * 137.38647 * 14 13 12 40 40 H 1.09003 * 109.51697 * 189.19330 * 15 14 13 41 41 H 1.09005 * 109.56224 * 69.05916 * 15 14 13 42 42 H 1.09002 * 109.47610 * 300.39076 * 18 16 15 43 43 H 1.09003 * 109.47534 * 60.39121 * 18 16 15 44 44 H 1.09003 * 109.47218 * 180.38966 * 18 16 15 45 45 H 1.09003 * 109.60294 * 316.43913 * 19 12 11 46 46 H 1.09006 * 109.59457 * 76.89511 * 19 12 11 47 47 H 0.97000 * 119.99922 * 95.00319 * 20 2 1 48 48 H 0.97000 * 119.99902 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 7 4.0531 -1.3035 -2.5101 7 6 5.3740 -1.3396 -2.7753 8 8 6.1607 -0.7987 -2.0216 9 6 5.8645 -2.0325 -3.9777 10 6 5.0458 -2.6550 -4.8618 11 16 5.9422 -3.3511 -6.1311 12 6 7.4692 -2.7962 -5.4650 13 6 7.2677 -2.1104 -4.3315 14 6 8.3923 -1.5046 -3.5072 15 6 9.6479 -1.4198 -4.3781 16 6 9.9062 -2.7843 -5.0241 17 1 9.8658 -3.5621 -4.2616 18 6 11.2860 -2.7867 -5.6850 19 6 8.8309 -3.0475 -6.0823 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8927 1.0407 2.4241 23 6 2.6123 -0.6615 3.5091 24 7 2.9263 -1.9383 3.4498 25 14 2.7914 0.2706 5.1180 26 1 1.5240 0.1794 5.8865 27 1 3.8963 -0.3225 5.9133 28 1 3.0962 1.6957 4.8331 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2054 34 1 3.8531 0.4370 -1.3574 35 1 3.9995 -1.0727 -0.4259 36 1 3.4258 -1.7351 -3.1110 37 1 3.9707 -2.7035 -4.7723 38 1 8.5921 -2.1311 -2.6380 39 1 8.1067 -0.5051 -3.1795 40 1 10.5017 -1.1421 -3.7601 41 1 9.5025 -0.6703 -5.1562 42 1 11.3261 -2.0065 -6.4452 43 1 12.0504 -2.5990 -4.9310 44 1 11.4646 -3.7563 -6.1499 45 1 8.8946 -4.0824 -6.4186 46 1 8.9782 -2.3762 -6.9284 47 1 2.2491 -1.6317 1.1527 48 1 3.2496 -2.3956 4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663005510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:29 Heat of formation + Delta-G solvation = -46.561846 kcal Electronic energy + Delta-G solvation = -26234.446691 eV Core-core repulsion = 22606.841187 eV Total energy + Delta-G solvation = -3627.605504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16083 -39.64122 -38.13289 -36.52583 -35.86767 -34.16223 -32.18085 -31.64227 -30.84603 -29.54436 -27.08385 -26.20729 -25.60887 -24.01789 -23.57834 -22.15847 -21.60595 -20.74196 -19.32816 -19.15630 -18.56245 -17.91887 -17.00108 -16.60327 -16.44456 -15.83173 -15.62039 -15.40080 -15.28321 -15.08033 -14.93195 -14.65217 -14.38262 -14.16611 -14.09220 -13.78934 -13.56277 -13.29895 -13.24169 -12.94864 -12.82920 -12.73658 -12.63952 -12.35994 -12.31698 -12.27813 -12.22796 -12.14097 -11.70907 -11.62494 -11.60345 -11.47614 -11.18122 -10.96708 -10.81624 -10.17806 -9.58792 -9.23432 -8.98760 -7.93543 -5.20333 -0.23652 0.56822 0.91973 0.92341 1.44581 1.46600 1.54442 2.16028 2.30842 2.56156 3.40641 3.56452 3.78907 3.87062 3.89400 3.93574 3.97572 4.00899 4.18630 4.21214 4.32906 4.35416 4.53371 4.58607 4.62331 4.65444 4.69621 4.74305 4.82102 4.83222 4.88623 4.99496 5.01351 5.04219 5.09505 5.12409 5.19284 5.19713 5.23942 5.38272 5.41063 5.42172 5.51893 5.53119 5.59135 5.60756 6.29473 6.53820 7.21920 7.35293 8.13255 8.34442 9.30135 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.002379 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.410231 B =11766.511052 C =13114.169930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 H 0.042 0.958 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.709 5.709 7 C 0.562 3.438 8 O -0.580 6.580 9 C -0.176 4.176 10 C -0.211 4.211 11 S 0.250 5.750 12 C -0.212 4.212 13 C -0.082 4.082 14 C -0.053 4.053 15 C -0.110 4.110 16 C -0.088 4.088 17 H 0.064 0.936 18 C -0.141 4.141 19 C -0.038 4.038 20 N -0.735 5.735 21 C -0.232 4.232 22 H 0.074 0.926 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.967 3.033 26 H -0.285 1.285 27 H -0.299 1.299 28 H -0.271 1.271 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.413 0.587 37 H 0.196 0.804 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -4.044 -29.207 30.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.060 0.940 4 C -0.153 4.153 5 C 0.011 3.989 6 N -0.361 5.361 7 C 0.349 3.651 8 O -0.461 6.461 9 C -0.194 4.194 10 C -0.349 4.349 11 S 0.520 5.480 12 C -0.329 4.329 13 C -0.093 4.093 14 C -0.092 4.092 15 C -0.148 4.148 16 C -0.108 4.108 17 H 0.082 0.918 18 C -0.199 4.199 19 C -0.077 4.077 20 N -0.376 5.376 21 C -0.364 4.364 22 H 0.092 0.908 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.196 1.196 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.250 0.750 37 H 0.213 0.787 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.984 -4.336 -29.874 31.495 hybrid contribution -0.006 0.798 2.959 3.065 sum 8.977 -3.537 -26.915 28.593 Atomic orbital electron populations 1.22255 0.96971 1.01081 1.00920 1.20461 0.93255 0.95166 0.85605 0.93974 1.21917 0.92232 1.02131 0.99054 1.21111 0.95478 0.96048 0.86228 1.45745 1.06888 1.56604 1.26852 1.18195 0.82423 0.79422 0.85012 1.90769 1.56365 1.48015 1.50991 1.20046 0.94102 1.07275 0.97991 1.25803 1.05971 1.03021 1.00086 1.82576 0.93322 1.50638 1.21430 1.25067 1.01232 1.06219 1.00362 1.20470 0.92517 1.00015 0.96255 1.20400 0.92354 1.00040 0.96451 1.21666 0.96196 0.98015 0.98916 1.21165 0.95445 0.96845 0.97321 0.91782 1.21784 0.94537 1.02756 1.00783 1.20507 0.86141 1.03383 0.97639 1.42652 1.78392 1.10224 1.06309 1.19602 1.34315 0.94087 0.88426 0.90794 1.25505 1.03327 0.96906 1.01408 1.69812 1.52962 1.10235 1.29186 0.85223 0.76845 0.78040 0.80224 1.21255 1.22616 1.19643 0.90535 0.93597 0.94811 0.87598 0.90948 0.93042 0.94582 0.74981 0.78732 0.92441 0.92096 0.90854 0.91276 0.91754 0.92432 0.91386 0.88629 0.88639 0.79694 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.49 71.98 0.68 -4.34 16 2 C 0.16 6.19 2.89 44.99 0.13 6.32 16 3 H 0.04 1.66 8.08 -2.38 -0.02 1.64 16 4 C -0.12 -3.37 4.87 30.60 0.15 -3.22 16 5 C 0.14 4.72 5.56 86.38 0.48 5.20 16 6 N -0.71 -20.27 5.52 -466.59 -2.58 -22.85 16 7 C 0.56 18.97 7.79 86.60 0.67 19.64 16 8 O -0.58 -25.07 14.61 -4.14 -0.06 -25.14 16 9 C -0.18 -4.64 5.97 -19.82 -0.12 -4.76 16 10 C -0.21 -3.75 10.35 67.21 0.70 -3.06 16 11 S 0.25 3.41 22.99 -56.49 -1.30 2.11 16 12 C -0.21 -3.89 6.32 25.01 0.16 -3.73 16 13 C -0.08 -2.09 5.95 -18.69 -0.11 -2.20 16 14 C -0.05 -1.43 5.07 30.29 0.15 -1.28 16 15 C -0.11 -2.07 5.21 30.66 0.16 -1.91 16 16 C -0.09 -1.27 2.71 -10.69 -0.03 -1.30 16 17 H 0.06 1.08 8.11 -2.39 -0.02 1.06 16 18 C -0.14 -1.41 9.18 71.98 0.66 -0.75 16 19 C -0.04 -0.48 5.56 30.19 0.17 -0.31 16 20 N -0.74 -37.04 4.57 -322.93 -1.48 -38.51 16 21 C -0.23 -13.14 9.93 84.03 0.83 -12.31 16 22 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 24 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 25 Si 0.97 48.00 29.55 68.60 2.03 50.03 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 28 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.63 7.75 -2.39 -0.02 1.61 16 36 H 0.41 8.20 6.94 -92.71 -0.64 7.56 16 37 H 0.20 2.23 6.97 -2.91 -0.02 2.21 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.97 6.94 -2.39 -0.02 1.95 16 40 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 41 H 0.07 1.21 8.10 -2.38 -0.02 1.19 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.10 0.95 8.12 -2.38 -0.02 0.93 16 47 H 0.37 20.27 7.80 -92.71 -0.72 19.55 16 48 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.49 396.61 1.65 -74.84 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.40 Total: 32.92 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.16 Total: -12.25 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -3.77 Total: -122.52 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.06 Total: -25.14 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.30 Total: 2.11 kcal Total: -76.49 1.65 -74.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663005510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.283 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds