Wall clock time and date at job start Sat Apr 11 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46884 * 240.00271 * 2 1 3 5 5 C 1.53004 * 109.47000 * 174.99897 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21633 * 120.00238 * 359.72097 * 7 6 5 9 9 C 1.47191 * 119.99772 * 179.72411 * 7 6 5 10 10 C 1.35622 * 123.19029 * 0.02562 * 9 7 6 11 11 S 1.70267 * 110.84562 * 179.97438 * 10 9 7 12 12 C 1.75599 * 92.62392 * 0.02562 * 11 10 9 13 13 C 1.34007 * 110.59552 * 359.73483 * 12 11 10 14 14 C 1.52018 * 123.45990 * 180.21466 * 13 12 11 15 15 C 1.53043 * 108.75293 * 343.06401 * 14 13 12 16 16 C 1.53166 * 109.20239 * 50.67663 * 15 14 13 17 17 H 1.09001 * 109.53678 * 49.50687 * 16 15 14 18 18 C 1.52996 * 109.54037 * 169.66973 * 16 15 14 19 19 C 1.51609 * 125.04735 * 179.97438 * 12 11 10 20 20 N 1.46496 * 109.46862 * 119.99783 * 2 1 3 21 21 C 1.36930 * 120.00547 * 275.00003 * 20 2 1 22 22 H 1.08006 * 119.99784 * 0.02562 * 21 20 2 23 23 C 1.38814 * 120.00508 * 180.02562 * 21 20 2 24 24 N 1.31619 * 119.99692 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00272 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47311 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47323 * 119.99444 * 25 23 21 28 28 H 1.48502 * 109.47453 * 239.99834 * 25 23 21 29 29 H 1.08996 * 109.47017 * 300.00188 * 1 2 3 30 30 H 1.08999 * 109.47108 * 59.99582 * 1 2 3 31 31 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47672 * 55.00228 * 4 2 1 33 33 H 1.09006 * 109.46819 * 294.99658 * 4 2 1 34 34 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 35 35 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 37 37 H 1.08007 * 124.57554 * 0.02562 * 10 9 7 38 38 H 1.09005 * 109.58995 * 102.84372 * 14 13 12 39 39 H 1.08994 * 109.59147 * 223.28430 * 14 13 12 40 40 H 1.08995 * 109.52215 * 170.59489 * 15 14 13 41 41 H 1.09002 * 109.51392 * 290.70826 * 15 14 13 42 42 H 1.09007 * 109.46918 * 60.00123 * 18 16 15 43 43 H 1.09002 * 109.46973 * 179.97438 * 18 16 15 44 44 H 1.08999 * 109.47778 * 300.00749 * 18 16 15 45 45 H 1.09001 * 109.59609 * 283.18017 * 19 12 11 46 46 H 1.09002 * 109.59335 * 43.64032 * 19 12 11 47 47 H 0.97002 * 119.99724 * 95.00245 * 20 2 1 48 48 H 0.96995 * 119.99580 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 7 4.0532 -1.3043 -2.5096 7 6 5.3746 -1.3449 -2.7720 8 8 6.1612 -0.8035 -2.0186 9 6 5.8658 -2.0444 -3.9703 10 6 5.0473 -2.6687 -4.8533 11 16 5.9443 -3.3716 -6.1184 12 6 7.4713 -2.8171 -5.4520 13 6 7.2693 -2.1268 -4.3212 14 6 8.3926 -1.5088 -3.5045 15 6 9.7173 -2.1486 -3.9264 16 6 9.8404 -2.0927 -5.4521 17 1 9.6298 -1.0807 -5.7979 18 6 11.2587 -2.4901 -5.8659 19 6 8.8336 -3.0735 -6.0661 20 7 2.0183 -0.6906 1.1962 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0403 2.4243 23 6 2.6123 -0.6617 3.5091 24 7 2.9253 -1.9388 3.4499 25 14 2.7900 0.2699 5.1183 26 1 2.3752 1.6821 4.9211 27 1 1.9296 -0.3594 6.1523 28 1 4.2069 0.2279 5.5608 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.9995 -1.0727 -0.4259 35 1 3.8532 0.4371 -1.3573 36 1 3.4259 -1.7364 -3.1102 37 1 3.9717 -2.7133 -4.7662 38 1 8.4304 -0.4350 -3.6887 39 1 8.2185 -1.6940 -2.4446 40 1 10.5456 -1.6033 -3.4741 41 1 9.7415 -3.1872 -3.5962 42 1 11.4671 -3.5033 -5.5221 43 1 11.3449 -2.4503 -6.9518 44 1 11.9745 -1.8004 -5.4187 45 1 9.1387 -4.1000 -5.8631 46 1 8.7858 -2.9100 -7.1427 47 1 2.2490 -1.6317 1.1526 48 1 3.2492 -2.3958 4.2417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663005515.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:33 Heat of formation + Delta-G solvation = -26.574377 kcal Electronic energy + Delta-G solvation = -26234.861340 eV Core-core repulsion = 22608.122558 eV Total energy + Delta-G solvation = -3626.738782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.08440 -38.68539 -36.58021 -35.65403 -34.36474 -32.28650 -31.32213 -30.75292 -29.19422 -28.08227 -26.41799 -25.02563 -23.74557 -23.06034 -22.37224 -21.28052 -20.25177 -19.48743 -18.38775 -17.72035 -17.22611 -16.82240 -15.52790 -15.42145 -14.92978 -14.76629 -14.54607 -14.18109 -14.14360 -13.97072 -13.60213 -13.47675 -13.32007 -12.99828 -12.92927 -12.57748 -12.47637 -12.32262 -12.02575 -12.00231 -11.58270 -11.54587 -11.52466 -11.06412 -10.98257 -10.90769 -10.77302 -10.73114 -10.60889 -10.45705 -10.25859 -9.95635 -9.63410 -9.57499 -8.91848 -8.85501 -8.74938 -8.43164 -6.92803 -5.72781 -3.01389 0.61955 1.31979 1.74103 1.89235 3.34407 3.46561 3.46725 3.52286 3.54423 4.30159 4.50759 4.53786 4.62036 4.63028 4.87913 4.98561 5.11338 5.21530 5.26689 5.31152 5.35354 5.38153 5.38694 5.40941 5.49987 5.58306 5.67432 5.71762 5.76598 5.82304 5.89458 5.93657 5.99308 6.07934 6.09237 6.18540 6.19235 6.35480 6.40620 6.45838 6.52013 6.69745 6.73204 6.87672 7.07302 7.67392 7.74763 8.40054 8.45538 9.56972 10.13609 10.48173 11.49972 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002377 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.709918 B =11775.722294 C =13126.792170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.723 5.723 7 C 0.569 3.431 8 O -0.528 6.528 9 C -0.139 4.139 10 C -0.217 4.217 11 S 0.172 5.828 12 C -0.209 4.209 13 C -0.050 4.050 14 C -0.055 4.055 15 C -0.118 4.118 16 C -0.089 4.089 17 H 0.075 0.925 18 C -0.147 4.147 19 C -0.037 4.037 20 N -0.723 5.723 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.169 0.831 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -3.569 -25.534 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C 0.001 3.999 6 N -0.374 5.374 7 C 0.354 3.646 8 O -0.405 6.405 9 C -0.158 4.158 10 C -0.355 4.355 11 S 0.442 5.558 12 C -0.326 4.326 13 C -0.060 4.060 14 C -0.094 4.094 15 C -0.155 4.155 16 C -0.109 4.109 17 H 0.094 0.906 18 C -0.204 4.204 19 C -0.076 4.076 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.227 0.773 37 H 0.186 0.814 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.903 -3.886 -26.130 28.212 hybrid contribution -0.236 0.670 1.965 2.089 sum 9.667 -3.217 -24.165 26.225 Atomic orbital electron populations 1.22425 0.99146 1.00812 0.99958 1.20149 0.91867 0.95589 0.86008 0.93264 1.22064 0.93922 1.01775 0.99359 1.21473 0.94361 0.97176 0.86919 1.45989 1.06809 1.56976 1.27661 1.17602 0.82481 0.80105 0.84457 1.90800 1.55089 1.45640 1.49004 1.20239 0.93088 1.04535 0.97896 1.25396 1.04518 1.04909 1.00698 1.82807 0.95684 1.53143 1.24216 1.24658 0.98941 1.08008 1.00992 1.20432 0.92808 0.98157 0.94652 1.20550 0.89742 0.99246 0.99840 1.21714 0.97440 1.01542 0.94818 1.21241 0.94360 0.99342 0.95967 0.90632 1.21829 0.95750 1.01687 1.01134 1.20398 0.88167 1.00021 0.99031 1.42456 1.78073 1.10651 1.05353 1.19264 1.36336 0.93864 0.87306 0.91160 1.24729 1.02207 0.95970 0.98060 1.69666 1.50990 1.08670 1.28755 0.86148 0.77317 0.78792 0.84126 1.20590 1.21989 1.21881 0.92709 0.94592 0.93541 0.91975 0.91642 0.89581 0.91694 0.77321 0.81362 0.90271 0.88786 0.91132 0.91641 0.92519 0.92659 0.92306 0.90184 0.90703 0.78300 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.36 2.89 -67.93 -0.20 3.16 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 6 N -0.72 -10.30 5.52 -61.45 -0.34 -10.64 16 7 C 0.57 9.13 7.79 -12.62 -0.10 9.03 16 8 O -0.53 -10.42 14.60 5.25 0.08 -10.34 16 9 C -0.14 -1.83 5.97 -104.56 -0.62 -2.46 16 10 C -0.22 -2.20 10.35 29.80 0.31 -1.89 16 11 S 0.17 1.48 22.99 -107.50 -2.47 -0.99 16 12 C -0.21 -2.11 6.32 -35.35 -0.22 -2.34 16 13 C -0.05 -0.62 5.95 -102.82 -0.61 -1.23 16 14 C -0.05 -0.67 5.07 -27.21 -0.14 -0.81 16 15 C -0.12 -1.09 5.20 -26.62 -0.14 -1.22 16 16 C -0.09 -0.68 2.73 -90.34 -0.25 -0.93 16 17 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 18 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 19 C -0.04 -0.28 5.56 -27.24 -0.15 -0.43 16 20 N -0.72 -17.82 4.57 -53.43 -0.24 -18.06 16 21 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 25 Si 0.90 22.80 29.55 -169.99 -5.02 17.78 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.82 7.75 -51.92 -0.40 1.41 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.39 4.27 6.94 -40.82 -0.28 3.99 16 37 H 0.17 1.28 6.97 -52.48 -0.37 0.91 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.37 6.93 -51.93 -0.36 1.01 16 40 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 41 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.38 10.09 7.80 -40.82 -0.32 9.78 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -32.72 396.61 -11.16 -43.88 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.03 Total: 9.64 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.82 Total: -9.47 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.14 Total: -56.47 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -0.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.72 -11.16 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663005515.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.304 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds