Wall clock time and date at job start Sat Apr 11 2020 04:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28712 * 126.03960 * 2 1 4 4 N 1.28511 * 110.63856 * 179.97438 * 3 2 1 5 5 C 1.33317 * 109.44025 * 359.97438 * 4 3 2 6 6 C 1.37011 * 106.37130 * 0.02562 * 5 4 3 7 7 C 1.47230 * 127.18827 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00288 * 174.41500 * 7 6 5 9 9 N 1.34777 * 120.00003 * 354.40657 * 7 6 5 10 10 C 1.47021 * 125.64909 * 5.14191 * 9 7 6 11 11 C 1.54325 * 107.27221 * 178.90111 * 10 9 7 12 12 C 1.55153 * 102.94345 * 337.80876 * 11 10 9 13 13 H 1.08999 * 111.00360 * 277.42654 * 12 11 10 14 14 C 1.52998 * 111.00325 * 153.57630 * 12 11 10 15 15 N 1.46908 * 109.47015 * 175.00132 * 14 12 11 16 16 C 1.46894 * 111.00089 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47310 * 180.02562 * 16 15 14 18 18 O 1.21293 * 120.00109 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00041 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99955 * 179.97438 * 19 17 16 21 21 H 1.08006 * 120.00006 * 359.97438 * 20 19 17 22 22 C 1.38939 * 120.00310 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99888 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00547 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46667 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47257 * 119.99579 * 24 22 20 27 27 H 1.48503 * 109.46690 * 239.99982 * 24 22 20 28 28 C 1.47424 * 125.64968 * 184.82973 * 9 7 6 29 29 H 1.08994 * 109.47436 * 95.31401 * 1 2 3 30 30 H 1.09000 * 109.47340 * 215.32429 * 1 2 3 31 31 H 1.09003 * 109.46678 * 335.31876 * 1 2 3 32 32 H 1.07997 * 126.81724 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.88424 * 298.31996 * 10 9 7 34 34 H 1.09001 * 109.88100 * 59.33278 * 10 9 7 35 35 H 1.09001 * 110.72069 * 96.17166 * 11 10 9 36 36 H 1.09000 * 110.71797 * 219.26918 * 11 10 9 37 37 H 1.08997 * 109.46823 * 294.99468 * 14 12 11 38 38 H 1.09000 * 109.47462 * 55.00147 * 14 12 11 39 39 H 1.00903 * 110.99874 * 303.95340 * 15 14 12 40 40 H 1.09004 * 109.47284 * 299.99875 * 16 15 14 41 41 H 1.09000 * 109.46954 * 59.99857 * 16 15 14 42 42 H 0.96995 * 120.00245 * 359.97438 * 19 17 16 43 43 H 0.96998 * 120.00416 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.37268 * 323.01058 * 28 9 7 45 45 H 1.09003 * 110.36785 * 85.32920 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4613 0.6995 0.0005 5 6 3.5552 -0.6304 0.0015 6 6 2.2711 -1.1082 0.0009 7 6 1.8461 -2.5178 0.0021 8 8 0.6669 -2.7974 0.1039 9 7 2.7639 -3.4985 -0.1098 10 6 4.2217 -3.3092 -0.1326 11 6 4.8636 -4.7080 -0.2458 12 6 3.7495 -5.6460 0.2891 13 1 3.7605 -5.6842 1.3783 14 6 3.8800 -7.0486 -0.3080 15 7 2.8866 -7.9379 0.3089 16 6 2.9822 -9.2963 -0.2417 17 6 1.9498 -10.1776 0.4130 18 8 1.2077 -9.7191 1.2558 19 7 1.8518 -11.4754 0.0628 20 6 0.9130 -12.2772 0.6588 21 1 0.2522 -11.8690 1.4093 22 6 0.8115 -13.6149 0.2975 23 7 1.6152 -14.1116 -0.6161 24 14 -0.4682 -14.7073 1.1090 25 1 -1.2426 -13.9130 2.0962 26 1 -1.3880 -15.2448 0.0746 27 1 0.2094 -15.8326 1.8019 28 6 2.4724 -4.9392 -0.2233 29 1 -0.3634 -0.0952 -1.0232 30 1 -0.3634 -0.8384 0.5942 31 1 -0.3633 0.9338 0.4291 32 1 4.4632 -1.2151 0.0017 33 1 4.5032 -2.7015 -0.9924 34 1 4.5467 -2.8230 0.7872 35 1 5.0988 -4.9415 -1.2842 36 1 5.7574 -4.7735 0.3747 37 1 3.7086 -7.0030 -1.3835 38 1 4.8814 -7.4337 -0.1157 39 1 2.9835 -7.9467 1.3132 40 1 2.8043 -9.2661 -1.3168 41 1 3.9774 -9.6972 -0.0493 42 1 2.4455 -11.8421 -0.6109 43 1 1.5442 -15.0454 -0.8687 44 1 1.6168 -5.2033 0.3982 45 1 2.2844 -5.2075 -1.2629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480640607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:20 Heat of formation + Delta-G solvation = 44.168201 kcal Electronic energy + Delta-G solvation = -27998.947355 eV Core-core repulsion = 23861.275738 eV Total energy + Delta-G solvation = -4137.671617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.71013 -40.38094 -38.46451 -37.97713 -35.63109 -34.94651 -33.90452 -32.78276 -31.43077 -31.20341 -29.72552 -28.48561 -27.27890 -25.62346 -24.45760 -23.35585 -22.72423 -22.47048 -20.76656 -20.19343 -19.23546 -17.97602 -17.81341 -17.34997 -17.26873 -16.62682 -16.17818 -15.76338 -15.61061 -14.90150 -14.88196 -14.54422 -14.44012 -14.00936 -13.74305 -13.73006 -13.53795 -13.39162 -13.26145 -12.99598 -12.86562 -12.52362 -12.27389 -11.87121 -11.68418 -11.58743 -11.54589 -11.26890 -11.19350 -11.05161 -10.98429 -10.63961 -10.47512 -10.35579 -10.24082 -9.91882 -9.53816 -9.08760 -8.50353 -8.11657 -7.97999 -6.43664 -3.84470 0.52099 1.63406 1.90022 2.53839 2.65590 3.15145 3.25926 3.33259 3.69484 3.88475 3.96099 4.00301 4.10096 4.21173 4.32373 4.39356 4.48977 4.59606 4.64898 4.81761 4.95754 4.99955 5.07038 5.11018 5.18323 5.21277 5.27128 5.37690 5.47643 5.49545 5.53907 5.61197 5.76357 5.78718 5.83765 5.93745 5.94722 6.03025 6.23393 6.95686 7.12624 7.53844 7.55661 7.57905 7.93115 8.04668 8.59146 9.16260 9.52320 10.03581 10.74100 Molecular weight = 336.17amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.001794 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.015294 B =15606.012119 C =16530.074095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.254 5.254 3 N -0.060 5.060 4 N -0.275 5.275 5 C -0.011 4.011 6 C -0.065 4.065 7 C 0.608 3.392 8 O -0.530 6.530 9 N -0.603 5.603 10 C 0.087 3.913 11 C -0.127 4.127 12 C -0.097 4.097 13 H 0.089 0.911 14 C 0.070 3.930 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.122 3.878 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.206 0.794 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.350 0.650 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.093 0.907 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 23.777 -2.322 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.051 5.051 3 N -0.041 5.041 4 N -0.137 5.137 5 C -0.171 4.171 6 C -0.200 4.200 7 C 0.394 3.606 8 O -0.407 6.407 9 N -0.336 5.336 10 C -0.036 4.036 11 C -0.165 4.165 12 C -0.116 4.116 13 H 0.107 0.893 14 C -0.060 4.060 15 N -0.303 5.303 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C 0.001 3.999 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.222 0.778 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.169 0.831 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.705 25.531 -2.195 26.488 hybrid contribution 0.504 -2.315 0.248 2.382 sum 7.209 23.216 -1.947 24.387 Atomic orbital electron populations 1.22588 0.71165 1.06732 1.06013 1.47667 1.10003 1.03356 1.44064 1.78287 0.96775 1.11491 1.17543 1.74918 1.09165 1.12614 1.17044 1.24478 0.97220 0.91979 1.03433 1.21887 0.91560 0.90786 1.15718 1.16209 0.84913 0.82015 0.77488 1.90849 1.16257 1.83242 1.50312 1.48116 1.06431 1.07488 1.71571 1.22489 0.79965 0.99100 1.02047 1.22712 0.98259 0.92536 1.03026 1.22335 0.93807 0.94197 1.01282 0.89290 1.21902 0.93708 0.90833 0.99586 1.60069 1.50711 1.08462 1.11018 1.21661 0.97494 0.88748 1.00228 1.19813 0.87755 0.83073 0.86826 1.90532 1.46292 1.74003 1.35843 1.41873 1.33161 1.07641 1.37404 1.19757 1.12404 0.90595 1.20064 0.87854 1.25265 0.98384 0.97476 0.96865 1.69619 1.38256 1.15371 1.31086 0.85799 0.80053 0.79531 0.78965 1.19207 1.20735 1.20778 1.22330 0.99052 0.76114 1.02380 0.88496 0.86573 0.87695 0.77781 0.90389 0.90443 0.89820 0.89357 0.90607 0.94661 0.83056 0.89573 0.93819 0.77472 0.91927 0.88829 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.84 59.85 0.65 1.14 16 2 N -0.25 -2.51 3.79 -64.12 -0.24 -2.76 16 3 N -0.06 -0.68 13.14 60.35 0.79 0.12 16 4 N -0.27 -3.10 12.35 30.47 0.38 -2.73 16 5 C -0.01 -0.09 10.52 -17.35 -0.18 -0.28 16 6 C -0.07 -0.65 6.95 -82.33 -0.57 -1.22 16 7 C 0.61 6.74 7.83 -12.61 -0.10 6.64 16 8 O -0.53 -7.41 15.19 5.26 0.08 -7.33 16 9 N -0.60 -5.47 3.33 -172.00 -0.57 -6.04 16 10 C 0.09 0.47 5.02 -3.06 -0.02 0.45 16 11 C -0.13 -0.63 6.42 -24.90 -0.16 -0.79 16 12 C -0.10 -0.77 3.18 -88.59 -0.28 -1.05 16 13 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 14 C 0.07 0.67 5.14 -3.82 -0.02 0.65 16 15 N -0.67 -9.64 6.07 -115.06 -0.70 -10.34 16 16 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 17 C 0.44 10.10 7.82 -10.99 -0.09 10.02 16 18 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.12 1.23 6.35 -2.65 -0.02 1.22 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.12 0.85 6.65 -51.93 -0.35 0.51 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.21 1.07 4.61 -52.49 -0.24 0.82 16 33 H 0.08 0.31 6.91 -51.93 -0.36 -0.05 16 34 H 0.08 0.32 7.02 -51.93 -0.36 -0.04 16 35 H 0.08 0.36 8.04 -51.93 -0.42 -0.05 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.35 5.26 8.43 -39.29 -0.33 4.93 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.09 1.21 7.99 -51.93 -0.41 0.79 16 45 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -35.25 376.15 -6.01 -41.27 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.09 Total: 9.73 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -1.06 Total: 9.66 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.32 Total: -59.41 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.17 Total: -22.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.25 -6.01 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480640607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.435 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds