Wall clock time and date at job start Sat Apr 11 2020 04:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28712 * 126.03960 * 2 1 4 4 N 1.28511 * 110.63856 * 179.97438 * 3 2 1 5 5 C 1.33317 * 109.44025 * 359.97438 * 4 3 2 6 6 C 1.37011 * 106.37130 * 0.02562 * 5 4 3 7 7 C 1.47230 * 127.18827 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00288 * 174.41500 * 7 6 5 9 9 N 1.34777 * 120.00003 * 354.40657 * 7 6 5 10 10 C 1.47021 * 125.64909 * 5.14191 * 9 7 6 11 11 C 1.54325 * 107.27221 * 178.90111 * 10 9 7 12 12 C 1.55153 * 102.94345 * 337.80876 * 11 10 9 13 13 H 1.08999 * 111.00360 * 277.42654 * 12 11 10 14 14 C 1.52998 * 111.00325 * 153.57630 * 12 11 10 15 15 N 1.46908 * 109.47015 * 175.00132 * 14 12 11 16 16 C 1.46894 * 111.00089 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47310 * 180.02562 * 16 15 14 18 18 O 1.21293 * 120.00109 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00041 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99955 * 179.97438 * 19 17 16 21 21 H 1.08006 * 120.00006 * 359.97438 * 20 19 17 22 22 C 1.38939 * 120.00310 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99888 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00547 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46667 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47257 * 119.99579 * 24 22 20 27 27 H 1.48503 * 109.46690 * 239.99982 * 24 22 20 28 28 C 1.47424 * 125.64968 * 184.82973 * 9 7 6 29 29 H 1.08994 * 109.47436 * 95.31401 * 1 2 3 30 30 H 1.09000 * 109.47340 * 215.32429 * 1 2 3 31 31 H 1.09003 * 109.46678 * 335.31876 * 1 2 3 32 32 H 1.07997 * 126.81724 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.88424 * 298.31996 * 10 9 7 34 34 H 1.09001 * 109.88100 * 59.33278 * 10 9 7 35 35 H 1.09001 * 110.72069 * 96.17166 * 11 10 9 36 36 H 1.09000 * 110.71797 * 219.26918 * 11 10 9 37 37 H 1.08997 * 109.46823 * 294.99468 * 14 12 11 38 38 H 1.09000 * 109.47462 * 55.00147 * 14 12 11 39 39 H 1.00903 * 110.99874 * 303.95340 * 15 14 12 40 40 H 1.09004 * 109.47284 * 299.99875 * 16 15 14 41 41 H 1.09000 * 109.46954 * 59.99857 * 16 15 14 42 42 H 0.96995 * 120.00245 * 359.97438 * 19 17 16 43 43 H 0.96998 * 120.00416 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.37268 * 323.01058 * 28 9 7 45 45 H 1.09003 * 110.36785 * 85.32920 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4613 0.6995 0.0005 5 6 3.5552 -0.6304 0.0015 6 6 2.2711 -1.1082 0.0009 7 6 1.8461 -2.5178 0.0021 8 8 0.6669 -2.7974 0.1039 9 7 2.7639 -3.4985 -0.1098 10 6 4.2217 -3.3092 -0.1326 11 6 4.8636 -4.7080 -0.2458 12 6 3.7495 -5.6460 0.2891 13 1 3.7605 -5.6842 1.3783 14 6 3.8800 -7.0486 -0.3080 15 7 2.8866 -7.9379 0.3089 16 6 2.9822 -9.2963 -0.2417 17 6 1.9498 -10.1776 0.4130 18 8 1.2077 -9.7191 1.2558 19 7 1.8518 -11.4754 0.0628 20 6 0.9130 -12.2772 0.6588 21 1 0.2522 -11.8690 1.4093 22 6 0.8115 -13.6149 0.2975 23 7 1.6152 -14.1116 -0.6161 24 14 -0.4682 -14.7073 1.1090 25 1 -1.2426 -13.9130 2.0962 26 1 -1.3880 -15.2448 0.0746 27 1 0.2094 -15.8326 1.8019 28 6 2.4724 -4.9392 -0.2233 29 1 -0.3634 -0.0952 -1.0232 30 1 -0.3634 -0.8384 0.5942 31 1 -0.3633 0.9338 0.4291 32 1 4.4632 -1.2151 0.0017 33 1 4.5032 -2.7015 -0.9924 34 1 4.5467 -2.8230 0.7872 35 1 5.0988 -4.9415 -1.2842 36 1 5.7574 -4.7735 0.3747 37 1 3.7086 -7.0030 -1.3835 38 1 4.8814 -7.4337 -0.1157 39 1 2.9835 -7.9467 1.3132 40 1 2.8043 -9.2661 -1.3168 41 1 3.9774 -9.6972 -0.0493 42 1 2.4455 -11.8421 -0.6109 43 1 1.5442 -15.0454 -0.8687 44 1 1.6168 -5.2033 0.3982 45 1 2.2844 -5.2075 -1.2629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480640607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:19 Heat of formation + Delta-G solvation = 15.225910 kcal Electronic energy + Delta-G solvation = -28000.202387 eV Core-core repulsion = 23861.275738 eV Total energy + Delta-G solvation = -4138.926649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.45489 -41.12940 -40.12866 -38.92404 -36.72250 -35.87360 -35.63603 -33.67941 -33.22682 -32.13459 -30.44483 -29.12865 -28.51433 -26.86089 -25.73865 -24.35703 -23.40499 -23.22595 -21.54888 -20.95665 -20.87684 -19.88872 -18.60437 -18.10872 -17.99111 -17.80632 -17.20333 -16.95516 -16.59135 -16.41512 -15.95928 -15.73659 -15.54391 -15.21507 -15.02781 -14.55830 -14.33523 -14.21883 -14.00144 -13.93048 -13.81978 -13.55906 -13.39058 -13.26932 -13.03347 -12.78264 -12.61025 -12.40775 -12.29535 -12.12828 -11.96027 -11.87725 -11.55591 -11.50773 -11.39001 -11.30149 -10.68124 -10.33124 -10.00536 -9.80764 -9.24455 -8.46710 -5.95090 -0.23481 0.95949 1.14292 1.36392 1.41782 1.55719 1.84012 1.86577 2.07070 2.29367 2.91356 3.10888 3.20997 3.30623 3.50421 3.59555 3.66709 3.76652 3.89701 3.96188 4.15468 4.28404 4.33809 4.41619 4.47018 4.49013 4.56240 4.57856 4.62691 4.66341 4.77050 4.85217 4.86669 4.91706 5.02150 5.09921 5.23032 5.24345 5.41252 5.42040 5.91468 6.14136 6.23978 6.45977 6.61211 6.75684 7.13682 7.17160 7.57866 8.13636 8.70818 Molecular weight = 336.17amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.001794 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.015294 B =15606.012119 C =16530.074095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.254 5.254 3 N -0.077 5.077 4 N -0.299 5.299 5 C 0.006 3.994 6 C -0.078 4.078 7 C 0.603 3.397 8 O -0.572 6.572 9 N -0.599 5.599 10 C 0.076 3.924 11 C -0.113 4.113 12 C -0.090 4.090 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.689 5.689 16 C 0.067 3.933 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.121 3.879 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.240 0.760 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.344 0.656 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.054 0.946 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.737 24.125 -3.068 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.052 5.052 3 N -0.058 5.058 4 N -0.161 5.161 5 C -0.155 4.155 6 C -0.213 4.213 7 C 0.390 3.610 8 O -0.452 6.452 9 N -0.330 5.330 10 C -0.045 4.045 11 C -0.151 4.151 12 C -0.110 4.110 13 H 0.102 0.898 14 C -0.057 4.057 15 N -0.322 5.322 16 C -0.065 4.065 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.195 1.195 28 C 0.000 4.000 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.146 0.854 32 H 0.256 0.744 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.081 25.895 -2.971 27.601 hybrid contribution -0.218 -2.391 0.477 2.447 sum 8.863 23.505 -2.494 25.243 Atomic orbital electron populations 1.22793 0.69857 1.07519 1.06793 1.47944 1.10912 1.03153 1.43147 1.78248 0.97158 1.12011 1.18334 1.74900 1.09284 1.13861 1.18077 1.25032 0.97841 0.91238 1.01381 1.21894 0.92226 0.90280 1.16866 1.16412 0.84675 0.82729 0.77195 1.90824 1.18027 1.83873 1.52456 1.48187 1.08013 1.06605 1.70230 1.22854 0.77367 1.00240 1.04030 1.22728 0.97585 0.90599 1.04202 1.22254 0.93987 0.93770 1.00952 0.89801 1.22009 0.93481 0.90467 0.99694 1.60070 1.53434 1.07872 1.10835 1.21509 0.96080 0.88623 1.00292 1.21032 0.87984 0.82892 0.85762 1.90500 1.48254 1.74749 1.37711 1.41946 1.33107 1.08379 1.37753 1.19682 1.13744 0.91878 1.20973 0.90522 1.26011 1.00019 0.98076 0.97166 1.69670 1.38962 1.15990 1.31433 0.84892 0.77766 0.77718 0.78088 1.19979 1.19672 1.19491 1.22238 0.99098 0.77261 1.01451 0.87349 0.87621 0.85409 0.74403 0.88153 0.88593 0.88439 0.86863 0.89786 0.92366 0.83791 0.87784 0.91163 0.76901 0.91313 0.92694 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 10.84 127.77 1.38 2.31 16 2 N -0.25 -4.93 3.79 -356.77 -1.35 -6.28 16 3 N -0.08 -1.68 13.14 37.02 0.49 -1.20 16 4 N -0.30 -6.36 12.35 -57.50 -0.71 -7.07 16 5 C 0.01 0.09 10.52 84.18 0.89 0.97 16 6 C -0.08 -1.50 6.95 40.41 0.28 -1.22 16 7 C 0.60 13.34 7.83 86.61 0.68 14.02 16 8 O -0.57 -16.81 15.19 -4.09 -0.06 -16.87 16 9 N -0.60 -10.18 3.33 -816.34 -2.72 -12.90 16 10 C 0.08 0.55 5.02 86.73 0.44 0.99 16 11 C -0.11 -0.64 6.42 31.78 0.20 -0.44 16 12 C -0.09 -1.25 3.18 -9.48 -0.03 -1.28 16 13 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 14 C 0.07 1.20 5.14 86.30 0.44 1.64 16 15 N -0.69 -19.17 6.07 -517.93 -3.14 -22.31 16 16 C 0.07 2.11 6.17 85.56 0.53 2.64 16 17 C 0.44 20.27 7.82 87.66 0.69 20.95 16 18 O -0.63 -34.52 15.78 -3.07 -0.05 -34.57 16 19 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.69 5.50 84.92 0.47 -0.23 16 23 N -0.92 -49.16 13.05 21.66 0.28 -48.87 16 24 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 C 0.12 2.42 6.35 86.78 0.55 2.97 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 1.66 6.65 -2.39 -0.02 1.65 16 31 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.24 1.59 4.61 -2.91 -0.01 1.57 16 33 H 0.10 0.36 6.91 -2.39 -0.02 0.34 16 34 H 0.10 0.40 7.02 -2.39 -0.02 0.39 16 35 H 0.10 0.36 8.04 -2.39 -0.02 0.34 16 36 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.08 1.29 7.96 -2.39 -0.02 1.27 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.34 10.25 8.43 -89.69 -0.76 9.49 16 40 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 43 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 44 H 0.05 1.52 7.99 -2.39 -0.02 1.50 16 45 H 0.07 1.49 7.90 -2.39 -0.02 1.48 16 Total: -1.00 -80.00 376.15 0.03 -79.96 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.43 Total: 30.60 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 7.33 Total: 25.25 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -8.78 Total: -129.32 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.11 Total: -51.44 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -80.00 0.03 -79.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480640607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.190 kcal (2) G-P(sol) polarization free energy of solvation -79.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds