Wall clock time and date at job start Sat Apr 11 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38291 * 119.97141 * 2 1 4 4 C 1.38241 * 120.11180 * 180.27964 * 3 2 1 5 5 C 1.38173 * 120.05599 * 359.44059 * 4 3 2 6 6 C 1.50697 * 120.02781 * 180.25768 * 5 4 3 7 7 C 1.38705 * 119.93997 * 0.53472 * 5 4 3 8 8 O 1.35905 * 120.05378 * 179.76867 * 7 5 4 9 9 C 1.42901 * 117.00024 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.46997 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99744 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99662 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00041 * 0.02562 * 12 10 9 14 14 C 1.46500 * 119.99766 * 180.02562 * 12 10 9 15 15 C 1.52996 * 109.47121 * 89.99982 * 14 12 10 16 16 H 1.08997 * 109.46743 * 60.00307 * 15 14 12 17 17 O 1.42900 * 109.47376 * 300.00216 * 15 14 12 18 18 C 1.53009 * 109.47214 * 179.97438 * 15 14 12 19 19 N 1.46492 * 109.46992 * 185.00253 * 18 15 14 20 20 C 1.36936 * 119.99733 * 180.02562 * 19 18 15 21 21 H 1.08003 * 120.00267 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00175 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99927 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00250 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46849 * 90.00170 * 24 22 20 26 26 H 1.48503 * 109.47200 * 209.99848 * 24 22 20 27 27 H 1.48498 * 109.47289 * 329.99892 * 24 22 20 28 28 C 1.38122 * 119.97676 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47018 * 90.00322 * 1 2 3 30 30 H 1.09003 * 109.47221 * 209.99953 * 1 2 3 31 31 H 1.08993 * 109.47188 * 330.00094 * 1 2 3 32 32 H 1.08002 * 119.93997 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.97233 * 179.72298 * 4 3 2 34 34 H 1.09006 * 109.47186 * 270.27903 * 6 5 4 35 35 H 1.09003 * 109.47302 * 30.27925 * 6 5 4 36 36 H 1.09002 * 109.47104 * 150.27533 * 6 5 4 37 37 H 1.08999 * 109.46865 * 299.99376 * 9 8 7 38 38 H 1.08999 * 109.47045 * 59.99888 * 9 8 7 39 39 H 1.09000 * 109.47355 * 90.00221 * 13 12 10 40 40 H 1.09006 * 109.46767 * 209.99638 * 13 12 10 41 41 H 1.08996 * 109.47646 * 329.99429 * 13 12 10 42 42 H 1.09000 * 109.47041 * 210.00578 * 14 12 10 43 43 H 1.09002 * 109.46971 * 329.99999 * 14 12 10 44 44 H 0.96698 * 113.99728 * 299.99722 * 17 15 14 45 45 H 1.09004 * 109.46889 * 305.00382 * 18 15 14 46 46 H 1.08996 * 109.46804 * 65.00136 * 18 15 14 47 47 H 0.96997 * 120.00497 * 0.02562 * 19 18 15 48 48 H 0.96999 * 120.00387 * 180.02562 * 23 22 20 49 49 H 1.08002 * 120.02377 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 -0.0058 5 6 4.2752 0.0072 0.0000 6 6 5.7822 0.0117 -0.0005 7 6 3.5846 -1.1957 0.0005 8 8 4.2659 -2.3717 0.0015 9 6 3.4893 -3.5713 0.0025 10 6 4.4092 -4.7651 0.0028 11 8 5.6113 -4.6043 0.0027 12 7 3.8958 -6.0112 0.0043 13 6 2.4438 -6.2053 0.0050 14 6 4.7900 -7.1717 0.0052 15 6 5.1018 -7.5742 1.4480 16 1 4.1752 -7.8291 1.9623 17 8 5.7355 -6.4841 2.1204 18 6 6.0351 -8.7866 1.4490 19 7 6.2382 -9.2454 2.8253 20 6 7.0427 -10.3249 3.0755 21 1 7.5271 -10.8384 2.2581 22 6 7.2347 -10.7601 4.3796 23 7 6.6431 -10.1354 5.3756 24 14 8.3316 -12.2331 4.7208 25 1 9.7273 -11.7724 4.9324 26 1 7.8523 -12.9358 5.9381 27 1 8.2871 -13.1622 3.5632 28 6 2.1971 -1.1964 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6564 2.1325 -0.0004 33 1 4.1174 2.1383 -0.0103 34 1 6.1452 0.0125 -1.0283 35 1 6.1431 0.9028 0.5130 36 1 6.1483 -0.8771 0.5134 37 1 2.8607 -3.5964 0.8926 38 1 2.8605 -3.5978 -0.8874 39 1 2.0833 -6.2546 -1.0224 40 1 2.2018 -7.1351 0.5199 41 1 1.9659 -5.3709 0.5182 42 1 4.3066 -8.0032 -0.5077 43 1 5.7166 -6.9169 -0.5092 44 1 6.5679 -6.2032 1.7163 45 1 5.5894 -9.5887 0.8606 46 1 6.9945 -8.5068 1.0139 47 1 5.8028 -8.7846 3.5594 48 1 6.7775 -10.4392 6.2869 49 1 1.6571 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278833708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:42:56 Heat of formation + Delta-G solvation = -85.918316 kcal Electronic energy + Delta-G solvation = -28743.599161 eV Core-core repulsion = 24671.534162 eV Total energy + Delta-G solvation = -4072.064999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.80384 -39.84301 -37.91802 -37.06593 -35.35582 -34.07087 -33.96987 -31.38373 -30.64770 -29.92807 -29.48174 -28.30387 -27.01765 -25.27020 -24.88836 -23.04717 -22.31081 -21.36603 -21.13885 -19.48660 -18.05914 -17.19962 -17.15044 -16.78537 -16.50763 -16.10493 -15.82691 -15.54699 -15.07544 -14.82549 -14.43746 -14.38401 -14.16059 -13.83806 -13.63084 -13.44291 -13.19297 -13.09202 -13.05730 -12.95720 -12.78599 -12.63419 -12.39355 -12.13471 -12.09595 -11.97968 -11.56439 -11.51546 -11.18486 -11.16136 -10.92366 -10.80077 -10.66084 -10.14647 -9.93907 -9.75163 -9.58761 -9.00608 -8.87706 -8.59060 -8.31649 -6.90071 -5.72969 -3.02416 1.00797 1.15886 2.30172 2.49903 3.29781 3.42190 3.45335 3.49879 3.51819 4.18544 4.39771 4.50357 4.58433 4.59242 4.69329 4.71855 4.85039 4.86961 4.88350 4.97502 4.98619 5.17250 5.22204 5.26276 5.28888 5.31660 5.41540 5.42352 5.44697 5.55064 5.57907 5.65835 5.71262 5.73015 5.99550 6.01328 6.07594 6.20750 6.23286 6.29630 6.36033 6.51562 6.53776 6.75020 7.06397 7.20844 7.70660 8.04254 8.21587 8.45293 9.56472 10.14536 10.50072 11.49457 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.001968 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.827931 B =14222.949288 C =14611.761970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.156 4.156 4 C -0.080 4.080 5 C -0.117 4.117 6 C -0.108 4.108 7 C 0.133 3.867 8 O -0.284 6.284 9 C 0.045 3.955 10 C 0.522 3.478 11 O -0.510 6.510 12 N -0.607 5.607 13 C 0.073 3.927 14 C 0.086 3.914 15 C 0.085 3.915 16 H 0.096 0.904 17 O -0.548 6.548 18 C 0.126 3.874 19 N -0.725 5.725 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.208 4.208 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.375 0.625 45 H 0.025 0.975 46 H 0.022 0.978 47 H 0.388 0.612 48 H 0.255 0.745 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.129 21.788 -16.075 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.174 4.174 4 C -0.098 4.098 5 C -0.118 4.118 6 C -0.165 4.165 7 C 0.088 3.912 8 O -0.196 6.196 9 C -0.034 4.034 10 C 0.308 3.692 11 O -0.383 6.383 12 N -0.342 5.342 13 C -0.070 4.070 14 C -0.037 4.037 15 C 0.025 3.975 16 H 0.113 0.887 17 O -0.353 6.353 18 C -0.003 4.003 19 N -0.370 5.370 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.227 4.227 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.223 0.777 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.222 0.778 48 H 0.065 0.935 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.681 21.635 -15.707 30.501 hybrid contribution 0.462 -0.872 0.142 0.997 sum -14.218 20.763 -15.565 29.589 Atomic orbital electron populations 1.20808 0.91009 1.02950 1.02413 1.19673 0.95977 0.92485 0.97335 1.20916 0.94094 0.97464 1.04974 1.20879 0.93973 0.96796 0.98158 1.19298 0.96822 0.90132 1.05521 1.20640 0.90244 1.03152 1.02416 1.18855 0.90274 0.85548 0.96539 1.86164 1.33971 1.11179 1.88311 1.22510 0.93915 0.83612 1.03364 1.19807 0.88912 0.83459 0.76993 1.90716 1.15048 1.85071 1.47510 1.47557 1.07137 1.05365 1.74105 1.21887 0.79726 1.03570 1.01858 1.22306 0.95251 0.87146 0.98950 1.22492 0.96895 0.87283 0.90869 0.88658 1.86542 1.40903 1.51060 1.56836 1.21237 0.95951 0.93310 0.89769 1.42245 1.57845 1.35511 1.01393 1.19223 1.20945 1.05003 0.92173 0.91253 1.24770 1.00866 0.99735 0.95633 1.69681 1.47171 1.42372 0.98618 0.86176 0.80293 0.82275 0.77340 1.21692 1.21766 1.20790 1.21088 0.92671 0.98976 1.09971 0.91015 0.91477 0.91329 0.85987 0.85345 0.91386 0.91750 0.90566 0.89033 0.89371 0.92256 0.90143 0.91281 0.89334 0.89292 0.77731 0.95782 0.96074 0.77758 0.93505 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.05 -0.45 5.88 -104.65 -0.62 -1.07 16 3 C -0.16 -1.27 9.70 -39.56 -0.38 -1.65 16 4 C -0.08 -0.70 9.70 -39.60 -0.38 -1.08 16 5 C -0.12 -1.25 5.89 -104.47 -0.62 -1.87 16 6 C -0.11 -1.08 9.79 36.00 0.35 -0.73 16 7 C 0.13 1.52 6.66 -39.22 -0.26 1.26 16 8 O -0.28 -3.68 8.71 -39.35 -0.34 -4.03 16 9 C 0.04 0.46 3.77 36.01 0.14 0.59 16 10 C 0.52 6.97 7.26 -10.98 -0.08 6.89 16 11 O -0.51 -8.83 14.87 -20.23 -0.30 -9.13 16 12 N -0.61 -6.88 2.83 -181.57 -0.51 -7.39 16 13 C 0.07 0.52 10.24 59.84 0.61 1.13 16 14 C 0.09 1.10 5.15 -4.04 -0.02 1.07 16 15 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 16 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 17 O -0.55 -10.51 12.09 -44.00 -0.53 -11.04 16 18 C 0.13 2.54 5.90 -4.04 -0.02 2.51 16 19 N -0.73 -19.02 5.55 -59.91 -0.33 -19.35 16 20 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.02 13.06 55.49 0.72 -28.29 16 24 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 28 C -0.21 -1.93 8.69 -39.43 -0.34 -2.28 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 37 H 0.09 0.79 6.92 -51.93 -0.36 0.43 16 38 H 0.09 0.65 7.63 -51.93 -0.40 0.25 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 41 H 0.07 0.38 6.44 -51.93 -0.33 0.05 16 42 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 43 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 44 H 0.38 6.86 8.45 45.56 0.38 7.24 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.39 10.98 7.67 -40.82 -0.31 10.66 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 49 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 LS Contribution 405.25 15.07 6.11 6.11 Total: -1.00 -36.47 405.25 -8.96 -45.44 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.15 Total: 11.65 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.60 Total: -1.78 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.12 Total: -55.04 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.18 Total: -24.20 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.47 -8.96 -45.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278833708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.482 kcal (2) G-P(sol) polarization free energy of solvation -36.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds