Wall clock time and date at job start Sat Apr 11 2020 04:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99755 * 2 1 4 4 C 1.38216 * 120.00037 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99744 * 359.96154 * 4 3 2 6 6 C 1.38212 * 120.00300 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00186 * 180.17630 * 2 1 3 8 8 C 1.50698 * 120.00333 * 0.03695 * 7 2 1 9 9 O 1.42895 * 109.47522 * 180.19775 * 8 7 2 10 10 C 1.42895 * 114.00318 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47286 * 329.99190 * 10 9 8 12 12 C 1.53000 * 109.47537 * 89.99526 * 10 9 8 13 13 C 1.50706 * 109.47306 * 209.99582 * 10 9 8 14 14 O 1.21279 * 119.99771 * 359.97438 * 13 10 9 15 15 N 1.34772 * 120.00070 * 179.97438 * 13 10 9 16 16 C 1.46509 * 119.99697 * 180.02562 * 15 13 10 17 17 C 1.52997 * 109.46651 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.47506 * 64.99951 * 17 16 15 19 19 C 1.53003 * 109.46918 * 184.99735 * 17 16 15 20 20 O 1.42906 * 109.47134 * 55.00024 * 19 17 16 21 21 N 1.46500 * 109.47207 * 304.99527 * 17 16 15 22 22 C 1.36945 * 119.99680 * 155.00366 * 21 17 16 23 23 H 1.07991 * 119.99990 * 359.97438 * 22 21 17 24 24 C 1.38817 * 119.99649 * 179.97438 * 22 21 17 25 25 N 1.31614 * 120.00140 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99567 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46654 * 90.00804 * 26 24 22 28 28 H 1.48504 * 109.46651 * 209.99984 * 26 24 22 29 29 H 1.48497 * 109.47427 * 330.00375 * 26 24 22 30 30 H 1.09005 * 109.47388 * 90.00327 * 1 2 3 31 31 H 1.09003 * 109.47096 * 209.99502 * 1 2 3 32 32 H 1.08998 * 109.47316 * 329.99372 * 1 2 3 33 33 H 1.08002 * 120.00247 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.00025 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.99759 * 179.97438 * 5 4 3 36 36 H 1.08002 * 119.99812 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.46916 * 300.19618 * 8 7 2 38 38 H 1.08997 * 109.47096 * 60.19168 * 8 7 2 39 39 H 1.09009 * 109.46943 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46649 * 299.99881 * 12 10 9 41 41 H 1.08996 * 109.46980 * 60.00415 * 12 10 9 42 42 H 0.96994 * 120.00391 * 0.02562 * 15 13 10 43 43 H 1.08996 * 109.46722 * 299.99855 * 16 15 13 44 44 H 1.09000 * 109.47121 * 60.00295 * 16 15 13 45 45 H 1.08998 * 109.47542 * 174.99676 * 19 17 16 46 46 H 1.09000 * 109.47241 * 295.00186 * 19 17 16 47 47 H 0.96697 * 114.00427 * 180.02562 * 20 19 17 48 48 H 0.96994 * 120.00390 * 335.00269 * 21 17 16 49 49 H 0.96993 * 120.00012 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0003 6 6 3.5807 -1.1969 0.0011 7 6 2.1981 -1.1969 -0.0037 8 6 1.4447 -2.5020 -0.0085 9 8 2.3733 -3.5881 -0.0071 10 6 1.7588 -4.8782 -0.0120 11 1 0.7971 -4.8246 0.4984 12 6 1.5450 -5.3359 -1.4562 13 6 2.6510 -5.8623 0.6999 14 8 3.7091 -5.4951 1.1652 15 7 2.2731 -7.1504 0.8194 16 6 3.1402 -8.1070 1.5120 17 6 2.4824 -9.4883 1.5066 18 1 2.4113 -9.8529 0.4819 19 6 3.3264 -10.4584 2.3357 20 8 3.5170 -9.9231 3.6470 21 7 1.1398 -9.3920 2.0849 22 6 0.1811 -10.3094 1.7463 23 1 0.4146 -11.1035 1.0527 24 6 -1.0909 -10.2185 2.2946 25 7 -1.3757 -9.2504 3.1396 26 14 -2.3989 -11.4695 1.8322 27 1 -2.3440 -12.6147 2.7759 28 1 -3.7390 -10.8335 1.9029 29 1 -2.1534 -11.9545 0.4503 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6582 2.1327 0.0004 34 1 4.1203 2.1328 -0.0010 35 1 5.3516 0.0002 -0.0011 36 1 4.1207 -2.1322 0.0018 37 1 0.8149 -2.5613 0.8792 38 1 0.8211 -2.5583 -0.9008 39 1 1.0759 -6.3198 -1.4598 40 1 0.8996 -4.6241 -1.9710 41 1 2.5067 -5.3896 -1.9664 42 1 1.4271 -7.4443 0.4470 43 1 4.1019 -8.1609 1.0018 44 1 3.2924 -7.7806 2.5408 45 1 2.8137 -11.4176 2.4060 46 1 4.2952 -10.5984 1.8561 47 1 4.0451 -10.4866 4.2290 48 1 0.9299 -8.6786 2.7076 49 1 -2.2646 -9.1867 3.5225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700799310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:52 Heat of formation + Delta-G solvation = -101.352983 kcal Electronic energy + Delta-G solvation = -28850.136908 eV Core-core repulsion = 24777.402612 eV Total energy + Delta-G solvation = -4072.734297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.96871 -39.41228 -37.65087 -36.90385 -34.86876 -33.55954 -33.26144 -32.34170 -31.42117 -30.49359 -28.28362 -27.35596 -26.14843 -25.53273 -23.86362 -23.37164 -21.93088 -20.97972 -20.12614 -19.82376 -17.73142 -17.23129 -16.97274 -16.62065 -16.32226 -15.82862 -15.57064 -15.08016 -14.94589 -14.76367 -14.55109 -14.16191 -13.88461 -13.71488 -13.43076 -13.29455 -13.18326 -13.13613 -12.82254 -12.73978 -12.51846 -12.43818 -12.25056 -12.05874 -11.88195 -11.43720 -11.38591 -11.07410 -10.90345 -10.89284 -10.87394 -10.57843 -10.13547 -10.04256 -9.81885 -9.41221 -9.25832 -9.00813 -8.85646 -8.67158 -8.56877 -7.07226 -5.84986 -3.15403 1.19886 1.31379 2.95554 3.05021 3.36180 3.41594 3.43549 3.63747 3.97323 4.49376 4.63690 4.68406 4.81857 4.88080 4.91940 4.97519 5.01181 5.08109 5.11653 5.19371 5.27304 5.38572 5.40918 5.44079 5.49406 5.54484 5.56606 5.58983 5.67401 5.71342 5.88907 5.91980 6.01332 6.02931 6.04055 6.05755 6.33712 6.35709 6.44624 6.49592 6.49969 6.73618 6.89182 6.91272 7.08531 7.59182 7.95899 8.19886 8.32080 8.61067 9.44328 9.99653 10.36303 11.36534 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002408 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.925072 B =11626.109840 C =12947.360057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.088 4.088 7 C -0.087 4.087 8 C 0.100 3.900 9 O -0.354 6.354 10 C 0.071 3.929 11 H 0.090 0.910 12 C -0.170 4.170 13 C 0.513 3.487 14 O -0.534 6.534 15 N -0.710 5.710 16 C 0.120 3.880 17 C 0.166 3.834 18 H 0.066 0.934 19 C 0.059 3.941 20 O -0.560 6.560 21 N -0.713 5.713 22 C -0.248 4.248 23 H 0.070 0.930 24 C -0.008 4.008 25 N -0.926 5.926 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.409 0.591 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.027 0.973 47 H 0.364 0.636 48 H 0.389 0.611 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 15.161 -9.008 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.087 4.087 8 C 0.024 3.976 9 O -0.272 6.272 10 C 0.010 3.990 11 H 0.108 0.892 12 C -0.227 4.227 13 C 0.297 3.703 14 O -0.410 6.410 15 N -0.364 5.364 16 C -0.004 4.004 17 C 0.054 3.946 18 H 0.084 0.916 19 C -0.022 4.022 20 O -0.363 6.363 21 N -0.355 5.355 22 C -0.379 4.379 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.573 5.573 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.245 0.755 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.209 0.791 48 H 0.223 0.777 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.215 15.817 -8.999 19.576 hybrid contribution -1.165 -1.260 0.154 1.722 sum 6.051 14.557 -8.845 18.076 Atomic orbital electron populations 1.20847 0.91214 1.03087 1.02439 1.19623 0.95952 0.92337 1.00417 1.20922 0.94270 0.97090 1.01944 1.21135 0.94307 0.98024 1.00345 1.21189 0.99991 0.92472 1.00969 1.21141 0.93684 0.98813 0.96973 1.19516 0.94313 0.92953 1.01919 1.21318 0.91074 0.84430 1.00759 1.87969 1.31951 1.12200 1.95038 1.21905 0.96211 0.84079 0.96843 0.89211 1.22235 1.03137 1.02386 0.94974 1.20197 0.86967 0.82917 0.80230 1.90681 1.23811 1.78346 1.48210 1.45905 1.24465 1.08071 1.57918 1.21541 0.92356 0.88820 0.97656 1.20598 0.86816 0.91548 0.95597 0.91633 1.23031 0.96996 0.98293 0.83887 1.86572 1.76168 1.49442 1.24156 1.42381 1.05265 1.34352 1.53500 1.19216 0.90561 1.06308 1.21778 0.91187 1.24748 0.97717 0.98552 0.99465 1.69674 1.20974 1.33095 1.33556 0.86230 0.81497 0.80772 0.77847 1.21763 1.21785 1.20766 0.90996 0.91315 0.91372 0.86138 0.86280 0.86095 0.84515 0.91622 0.91777 0.90468 0.91479 0.91254 0.75481 0.92117 0.90588 0.93325 0.95513 0.79144 0.77678 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.60 36.00 0.35 -0.60 16 2 C -0.08 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 6 C -0.09 -1.13 9.38 -39.58 -0.37 -1.50 16 7 C -0.09 -1.05 5.88 -104.63 -0.62 -1.67 16 8 C 0.10 1.17 4.86 36.00 0.18 1.35 16 9 O -0.35 -5.13 8.00 -55.14 -0.44 -5.57 16 10 C 0.07 0.98 3.14 -27.88 -0.09 0.89 16 11 H 0.09 1.13 7.79 -51.93 -0.40 0.73 16 12 C -0.17 -1.89 9.42 37.16 0.35 -1.54 16 13 C 0.51 8.87 7.23 -10.98 -0.08 8.79 16 14 O -0.53 -11.20 16.50 -14.35 -0.24 -11.44 16 15 N -0.71 -11.96 5.28 -60.29 -0.32 -12.28 16 16 C 0.12 2.14 5.12 -4.04 -0.02 2.12 16 17 C 0.17 3.08 2.84 -67.93 -0.19 2.89 16 18 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 19 C 0.06 1.02 6.86 37.16 0.25 1.27 16 20 O -0.56 -9.97 12.64 -35.23 -0.45 -10.42 16 21 N -0.71 -16.60 4.51 -53.42 -0.24 -16.84 16 22 C -0.25 -6.35 9.93 -15.05 -0.15 -6.50 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 26 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 6.64 -51.93 -0.34 0.19 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.92 7.01 -52.49 -0.37 1.56 16 37 H 0.07 0.73 7.43 -51.93 -0.39 0.35 16 38 H 0.06 0.62 7.87 -51.93 -0.41 0.22 16 39 H 0.08 0.81 7.57 -51.92 -0.39 0.42 16 40 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.41 6.72 7.56 -40.82 -0.31 6.41 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.54 7.40 -51.93 -0.38 1.15 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.36 4.67 9.12 45.56 0.42 5.08 16 48 H 0.39 10.10 7.80 -40.82 -0.32 9.78 16 49 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -33.15 407.51 -9.20 -42.35 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -7.08 Total: 19.03 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.28 Total: -1.21 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.17 Total: -55.14 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.12 Total: -27.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.15 -9.20 -42.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700799310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.007 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds