Wall clock time and date at job start Sat Apr 11 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47484 * 2 1 4 4 O 1.33910 * 125.61198 * 275.55199 * 3 2 1 5 5 C 1.34935 * 109.38714 * 179.97438 * 4 3 2 6 6 C 1.46463 * 125.99872 * 179.97438 * 5 4 3 7 7 O 1.21634 * 119.99615 * 180.02562 * 6 5 4 8 8 O 1.34890 * 120.00419 * 0.02946 * 6 5 4 9 9 C 1.45194 * 117.00456 * 179.97438 * 8 6 5 10 10 C 1.36648 * 108.00107 * 0.02562 * 5 4 3 11 11 C 1.35176 * 125.60933 * 95.54855 * 3 2 1 12 12 C 1.50700 * 126.43561 * 0.02855 * 11 3 2 13 13 N 1.46902 * 109.46850 * 283.09445 * 12 11 3 14 14 C 1.46955 * 111.00071 * 288.52975 * 13 12 11 15 15 C 1.53049 * 109.36479 * 176.81342 * 14 13 12 16 16 N 1.46950 * 109.36429 * 58.39903 * 15 14 13 17 17 C 1.46902 * 110.99807 * 176.81220 * 16 15 14 18 18 C 1.50707 * 109.47274 * 293.79874 * 17 16 15 19 19 H 1.08003 * 119.99540 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00324 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99700 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47092 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47092 * 120.00061 * 22 20 18 25 25 H 1.48505 * 109.46787 * 239.99875 * 22 20 18 26 26 C 1.46951 * 110.88219 * 300.67697 * 16 15 14 27 27 C 1.46950 * 110.99807 * 164.72888 * 13 12 11 28 28 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46828 * 300.00446 * 1 2 3 30 30 H 1.09005 * 109.46712 * 59.99917 * 1 2 3 31 31 H 1.09005 * 109.47431 * 240.00208 * 2 1 3 32 32 H 1.09003 * 109.47405 * 120.00329 * 2 1 3 33 33 H 1.09002 * 109.47242 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47208 * 300.00354 * 9 8 6 35 35 H 1.08997 * 109.47255 * 60.00037 * 9 8 6 36 36 H 1.08004 * 126.64319 * 179.97438 * 10 5 4 37 37 H 1.08998 * 109.46936 * 43.09314 * 12 11 3 38 38 H 1.08993 * 109.47324 * 163.09503 * 12 11 3 39 39 H 1.09004 * 109.48525 * 296.77951 * 14 13 12 40 40 H 1.09000 * 109.48948 * 56.84555 * 14 13 12 41 41 H 1.08997 * 109.48887 * 298.42781 * 15 14 13 42 42 H 1.09002 * 109.50381 * 178.38058 * 15 14 13 43 43 H 1.08999 * 109.47595 * 53.79689 * 17 16 15 44 44 H 1.09002 * 109.47459 * 173.80097 * 17 16 15 45 45 H 0.96998 * 119.99414 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.49172 * 299.35802 * 26 16 15 47 47 H 1.09000 * 109.48952 * 179.28748 * 26 16 15 48 48 H 1.08995 * 109.49430 * 303.15313 * 27 13 12 49 49 H 1.08996 * 109.48924 * 63.22587 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.1930 2.1910 -1.0836 5 6 2.6588 3.4006 -0.7083 6 6 2.9633 4.5208 -1.6013 7 8 3.3805 5.5675 -1.1433 8 8 2.7809 4.3918 -2.9316 9 6 3.1027 5.5430 -3.7558 10 6 2.7977 3.3964 0.6511 11 6 2.3950 2.1274 1.0938 12 6 2.3713 1.6430 2.5207 13 7 0.9894 1.6544 3.0188 14 6 0.5167 3.0299 3.2291 15 6 -0.9484 3.0011 3.6707 16 7 -1.0703 2.2110 4.9037 17 6 -2.4522 2.2224 5.4018 18 6 -2.8180 3.6182 5.8367 19 1 -2.0962 4.4170 5.7511 20 6 -4.0741 3.8755 6.3437 21 7 -4.9529 2.9026 6.4483 22 14 -4.5276 5.6058 6.8820 23 1 -3.3711 6.5112 6.6636 24 1 -5.6877 6.0833 6.0874 25 1 -4.8845 5.5981 8.3235 26 6 -0.5977 0.8355 4.6933 27 6 0.8675 0.8643 4.2518 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9108 5.3057 -4.8022 34 1 2.4841 6.3888 -3.4560 35 1 4.1545 5.7988 -3.6279 36 1 3.1496 4.2119 1.2657 37 1 2.7656 0.6279 2.5663 38 1 2.9852 2.2993 3.1374 39 1 1.1199 3.5075 4.0012 40 1 0.6052 3.5911 2.2989 41 1 -1.5556 2.5480 2.8870 42 1 -1.2930 4.0186 3.8551 43 1 -3.1271 1.9004 4.6087 44 1 -2.5384 1.5433 6.2501 45 1 -5.8364 3.0835 6.8054 46 1 -1.2008 0.3578 3.9212 47 1 -0.6862 0.2743 5.6235 48 1 1.2117 -0.1533 4.0673 49 1 1.4746 1.3174 5.0355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:10 Heat of formation + Delta-G solvation = -59.949473 kcal Electronic energy + Delta-G solvation = -29648.680788 eV Core-core repulsion = 25577.741882 eV Total energy + Delta-G solvation = -4070.938906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.01057 -40.44009 -38.77406 -36.82404 -35.72383 -34.13567 -33.28691 -32.30371 -30.42906 -30.10590 -28.59421 -27.67233 -26.03776 -24.70201 -23.84939 -23.02657 -22.24081 -21.43160 -21.36096 -19.93559 -19.13274 -18.08362 -17.32161 -17.06849 -16.31878 -16.23212 -15.84086 -15.64559 -14.99701 -14.58030 -14.46356 -14.29833 -14.19839 -14.05053 -13.64593 -13.59680 -13.35863 -13.29031 -13.13342 -12.55466 -12.49030 -12.35907 -12.11352 -11.97853 -11.67830 -11.53383 -11.17171 -11.16702 -11.15384 -11.08015 -10.87240 -10.73222 -10.62111 -10.40960 -10.31035 -9.99771 -9.72358 -9.16173 -8.69297 -8.43726 -8.16989 -7.22043 -6.02451 -4.03576 0.62095 1.97929 2.03959 2.64155 2.74577 3.31281 3.38750 3.43720 4.13260 4.31006 4.43061 4.50820 4.60795 4.75723 4.84836 4.92898 4.95990 5.04652 5.11172 5.16752 5.23160 5.29950 5.33406 5.34145 5.46256 5.56153 5.64078 5.67860 5.77025 5.79387 5.84281 5.85798 5.92007 5.93886 6.07997 6.12627 6.20039 6.29350 6.42422 6.59670 6.69472 6.71183 7.17532 7.20113 7.35080 7.36115 7.38330 7.81055 8.09821 8.21341 8.56063 9.04370 9.60815 11.08473 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002762 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.698525 B =10136.321080 C =11459.979697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C 0.065 3.935 4 O -0.150 6.150 5 C -0.082 4.082 6 C 0.555 3.445 7 O -0.490 6.490 8 O -0.350 6.350 9 C 0.036 3.964 10 C -0.085 4.085 11 C -0.182 4.182 12 C 0.124 3.876 13 N -0.533 5.533 14 C 0.060 3.940 15 C 0.069 3.931 16 N -0.538 5.538 17 C 0.194 3.806 18 C -0.506 4.506 19 H 0.063 0.937 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.057 3.943 27 C 0.061 3.939 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.162 0.838 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.085 0.915 43 H -0.009 1.009 44 H 0.029 0.971 45 H 0.260 0.740 46 H 0.030 0.970 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.698 -4.657 -17.451 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C 0.011 3.989 4 O -0.046 6.046 5 C -0.131 4.131 6 C 0.401 3.599 7 O -0.379 6.379 8 O -0.266 6.266 9 C -0.057 4.057 10 C -0.105 4.105 11 C -0.183 4.183 12 C -0.004 4.004 13 N -0.258 5.258 14 C -0.068 4.068 15 C -0.059 4.059 16 N -0.264 5.264 17 C 0.069 3.931 18 C -0.544 4.544 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.724 3.276 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.072 4.072 27 C -0.066 4.066 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.179 0.821 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.103 0.897 43 H 0.009 0.991 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 17.575 -4.426 -17.585 25.253 hybrid contribution -0.328 1.259 0.338 1.344 sum 17.246 -3.167 -17.247 24.595 Atomic orbital electron populations 1.21788 0.92769 1.02602 1.03714 1.20210 0.97488 0.86132 1.03949 1.22849 0.98073 0.94586 0.83424 1.84076 1.64529 1.21034 1.34942 1.20400 1.14250 0.85849 0.92620 1.19184 0.74651 0.85032 0.81080 1.90958 1.42825 1.27199 1.76938 1.86661 1.78997 1.42702 1.18263 1.23351 1.01667 0.86839 0.93873 1.21885 0.98414 0.98115 0.92129 1.20042 1.07863 0.93944 0.96482 1.20347 0.90329 1.00598 0.89077 1.62181 1.19322 1.13820 1.30490 1.22242 0.97024 0.88218 0.99350 1.21964 0.93178 0.99982 0.90824 1.62277 1.26810 1.09410 1.27880 1.19695 0.81125 0.97866 0.94423 1.21195 0.97708 0.94441 1.41104 0.91911 1.24989 0.96420 0.97240 0.95990 1.69971 1.05846 1.31623 1.46393 0.86464 0.78355 0.84515 0.78234 1.19667 1.21112 1.21030 1.22051 0.93604 0.92169 0.99343 1.22168 0.97758 0.96871 0.89847 0.91696 0.90086 0.92746 0.90243 0.88278 0.87714 0.91478 0.91597 0.82054 0.89956 0.93525 0.94302 0.91338 0.95447 0.89711 0.99111 0.95258 0.93005 0.95167 0.91074 0.91156 0.94227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.04 -0.35 6.31 -27.89 -0.18 -0.52 16 3 C 0.06 0.72 6.57 -35.40 -0.23 0.48 16 4 O -0.15 -1.88 10.67 4.75 0.05 -1.83 16 5 C -0.08 -1.04 7.18 -36.85 -0.26 -1.30 16 6 C 0.56 7.08 7.93 34.04 0.27 7.35 16 7 O -0.49 -7.02 16.66 -19.37 -0.32 -7.34 16 8 O -0.35 -3.90 10.58 -42.45 -0.45 -4.35 16 9 C 0.04 0.26 10.57 101.05 1.07 1.33 16 10 C -0.09 -1.03 10.14 -39.38 -0.40 -1.43 16 11 C -0.18 -2.08 4.86 -104.94 -0.51 -2.59 16 12 C 0.12 1.35 5.06 -4.97 -0.03 1.33 16 13 N -0.53 -7.13 4.66 -235.92 -1.10 -8.23 16 14 C 0.06 0.93 5.44 -3.77 -0.02 0.91 16 15 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 16 N -0.54 -11.48 4.70 -235.91 -1.11 -12.58 16 17 C 0.19 5.04 4.72 -4.97 -0.02 5.01 16 18 C -0.51 -14.19 8.47 -34.44 -0.29 -14.48 16 19 H 0.06 1.75 7.13 -52.48 -0.37 1.38 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 27 C 0.06 0.84 5.59 -3.77 -0.02 0.82 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.73 7.29 -51.93 -0.38 0.35 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.08 0.74 7.34 -51.93 -0.38 0.36 16 38 H 0.05 0.51 8.06 -51.93 -0.42 0.09 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.04 7.04 -51.93 -0.37 0.67 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.81 6.79 -51.93 -0.35 1.45 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 48 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -32.07 402.43 -9.70 -41.77 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -8.15 Total: -3.80 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.40 Total: -0.41 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -1.47 Total: -46.82 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.72 Total: -13.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.07 -9.70 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.181 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds