Wall clock time and date at job start Sat Apr 11 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46804 * 2 1 4 4 C 1.50696 * 109.47022 * 119.99885 * 2 1 3 5 5 C 1.38268 * 119.94323 * 120.00168 * 4 2 1 6 6 C 1.38139 * 120.05525 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94491 * 0.02562 * 6 5 4 8 8 O 1.35905 * 120.05258 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99604 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46992 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99890 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99647 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99752 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47293 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47051 * 305.00100 * 14 13 12 16 16 O 1.42905 * 109.46986 * 65.00054 * 14 13 12 17 17 C 1.53001 * 109.47410 * 185.00013 * 14 13 12 18 18 N 1.46498 * 109.47388 * 179.97438 * 17 14 13 19 19 C 1.36939 * 120.00068 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99809 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99806 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00349 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46965 * 60.00315 * 23 21 19 25 25 H 1.48495 * 109.47181 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47064 * 300.00706 * 23 21 19 27 27 C 1.38722 * 119.88959 * 0.27067 * 7 6 5 28 28 C 1.38150 * 119.94161 * 359.47389 * 27 7 6 29 29 H 1.09002 * 109.47451 * 60.00088 * 1 2 3 30 30 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46962 * 300.00017 * 1 2 3 32 32 H 1.09001 * 109.46962 * 239.99983 * 2 1 3 33 33 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47497 * 299.99877 * 3 2 1 35 35 H 1.08998 * 109.47624 * 59.99784 * 3 2 1 36 36 H 1.07994 * 119.97151 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.02930 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47352 * 299.99771 * 9 8 7 39 39 H 1.08999 * 109.47144 * 59.99795 * 9 8 7 40 40 H 0.96995 * 120.00267 * 0.02562 * 12 10 9 41 41 H 1.09006 * 109.47300 * 299.99891 * 13 12 10 42 42 H 1.08999 * 109.47172 * 60.00041 * 13 12 10 43 43 H 0.96697 * 114.00044 * 60.00040 * 16 14 13 44 44 H 1.09004 * 109.47085 * 300.00067 * 17 14 13 45 45 H 1.09004 * 109.46957 * 59.99731 * 17 14 13 46 46 H 0.97000 * 120.00248 * 0.02562 * 18 17 14 47 47 H 0.97002 * 120.00158 * 179.97438 * 22 21 19 48 48 H 1.08006 * 120.03385 * 179.72149 * 27 7 6 49 49 H 1.08007 * 119.97071 * 180.23081 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8272 -1.8344 1.1023 6 6 3.2894 -2.4871 2.2286 7 6 2.9549 -2.0141 3.4892 8 8 3.4088 -2.6543 4.5988 9 6 3.0252 -2.1109 5.8636 10 6 3.6167 -2.9466 6.9695 11 8 4.2991 -3.9125 6.7010 12 7 3.3873 -2.6204 8.2569 13 6 3.9619 -3.4331 9.3320 14 6 3.5513 -2.8513 10.6862 15 1 3.8402 -1.8013 10.7332 16 8 2.1353 -2.9633 10.8431 17 6 4.2512 -3.6235 11.8064 18 7 3.8585 -3.0661 13.1030 19 6 4.3624 -3.6003 14.2588 20 1 5.0496 -4.4323 14.2145 21 6 3.9908 -3.0718 15.4874 22 7 3.1537 -2.0576 15.5414 23 14 4.6787 -3.8000 17.0641 24 1 6.1593 -3.6855 17.0574 25 1 4.1300 -3.0627 18.2304 26 1 4.2933 -5.2311 17.1577 27 6 2.1522 -0.8898 3.6152 28 6 1.6969 -0.2375 2.4856 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.0870 -2.2025 0.1207 37 1 3.9099 -3.3654 2.1280 38 1 3.3912 -1.0876 5.9456 39 1 1.9384 -2.1158 5.9466 40 1 2.8412 -1.8481 8.4717 41 1 3.5946 -4.4561 9.2501 42 1 5.0487 -3.4294 9.2490 43 1 1.8068 -3.8722 10.8116 44 1 3.9623 -4.6735 11.7593 45 1 5.3313 -3.5381 11.6866 46 1 3.2410 -2.3191 13.1429 47 1 2.8937 -1.6885 16.4000 48 1 1.8867 -0.5222 4.5954 49 1 1.0750 0.6401 2.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320249107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:40 Heat of formation + Delta-G solvation = -99.943776 kcal Electronic energy + Delta-G solvation = -27341.375617 eV Core-core repulsion = 23268.702428 eV Total energy + Delta-G solvation = -4072.673189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77870 -39.76578 -38.36334 -37.55548 -35.15742 -34.49808 -34.03816 -31.50978 -31.35712 -30.32359 -29.24215 -27.91353 -27.57104 -25.24008 -23.72118 -23.04753 -22.40331 -21.50610 -20.54586 -20.41508 -18.70634 -17.75408 -17.18426 -16.74467 -16.48162 -16.30196 -15.87215 -15.75890 -15.22064 -14.79924 -14.60057 -14.51332 -14.48242 -13.92077 -13.90654 -13.73291 -13.67915 -13.32521 -13.05440 -12.94923 -12.76851 -12.70446 -12.48594 -12.33445 -11.91223 -11.70297 -11.61745 -11.21236 -11.17508 -11.00323 -10.98270 -10.82534 -10.68377 -10.23556 -10.13209 -9.84074 -9.55078 -9.36070 -9.25570 -8.92784 -8.42123 -6.97228 -5.78777 -3.08740 0.98206 1.05899 2.28186 2.36483 3.38321 3.40004 3.42660 3.47169 3.48197 4.25094 4.28110 4.39574 4.47581 4.51305 4.62882 4.65635 4.66708 4.69324 4.76585 4.81554 4.96904 4.99111 5.11184 5.17835 5.18732 5.26052 5.39495 5.42798 5.52322 5.53354 5.55072 5.66328 5.71568 5.77476 5.79746 5.88663 5.93618 6.01355 6.13507 6.24671 6.28802 6.39269 6.46722 6.62357 7.00156 7.28061 7.65540 7.87571 7.99119 8.39292 9.51087 10.07103 10.43014 11.43386 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.001433 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.795742 B =19538.980905 C =20084.903491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.078 4.078 6 C -0.146 4.146 7 C 0.126 3.874 8 O -0.290 6.290 9 C 0.042 3.958 10 C 0.513 3.487 11 O -0.520 6.520 12 N -0.717 5.717 13 C 0.091 3.909 14 C 0.089 3.911 15 H 0.105 0.895 16 O -0.553 6.553 17 C 0.126 3.874 18 N -0.725 5.725 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C -0.208 4.208 28 C -0.074 4.074 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.406 0.594 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.374 0.626 44 H 0.023 0.977 45 H 0.029 0.971 46 H 0.389 0.611 47 H 0.256 0.744 48 H 0.129 0.871 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 5.812 -33.140 34.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.164 4.164 7 C 0.081 3.919 8 O -0.202 6.202 9 C -0.037 4.037 10 C 0.297 3.703 11 O -0.395 6.395 12 N -0.371 5.371 13 C -0.033 4.033 14 C 0.029 3.971 15 H 0.123 0.877 16 O -0.357 6.357 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.226 4.226 28 C -0.092 4.092 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.241 0.759 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.222 0.778 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.224 0.776 47 H 0.066 0.934 48 H 0.146 0.854 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.312 5.482 -33.138 33.864 hybrid contribution -0.189 -0.204 1.200 1.232 sum -4.501 5.278 -31.938 32.683 Atomic orbital electron populations 1.21874 0.94422 1.02047 1.01892 1.20059 0.95853 0.95939 0.95238 1.21871 1.01289 0.95182 1.01892 1.19776 1.00220 0.96971 0.94711 1.20872 0.96303 0.94512 0.97905 1.20446 1.04179 1.02484 0.89317 1.19066 0.94144 0.91870 0.86823 1.86162 1.70265 1.52085 1.11686 1.22472 1.00955 0.97871 0.82412 1.19979 0.81372 0.85481 0.83433 1.90761 1.37817 1.27713 1.83219 1.45753 1.53930 1.32609 1.04777 1.22164 0.99574 0.95222 0.86298 1.22395 0.81924 1.01428 0.91321 0.87703 1.86572 1.20719 1.32732 1.95720 1.21193 0.96918 0.95564 0.86566 1.42212 1.55500 1.40046 0.99275 1.19177 1.21677 1.12329 0.84532 0.91248 1.24752 0.99844 0.98473 0.97650 1.69663 1.37173 1.26407 1.24545 0.86255 0.78424 0.78300 0.83105 1.21219 1.21625 1.21225 1.21266 1.03359 0.97997 1.00010 1.20752 0.98241 0.98870 0.91307 0.92440 0.92502 0.92479 0.90549 0.92503 0.92441 0.92481 0.85411 0.84991 0.88864 0.88828 0.75881 0.90809 0.90169 0.77836 0.95890 0.95319 0.77645 0.93411 0.85350 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.01 37.16 0.33 -0.37 16 2 C -0.05 -0.28 3.09 -91.77 -0.28 -0.57 16 3 C -0.15 -0.71 9.01 37.16 0.33 -0.37 16 4 C -0.12 -0.83 4.78 -104.60 -0.50 -1.33 16 5 C -0.08 -0.59 9.66 -39.61 -0.38 -0.97 16 6 C -0.15 -1.35 9.99 -39.43 -0.39 -1.74 16 7 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 8 O -0.29 -3.43 9.67 -39.35 -0.38 -3.81 16 9 C 0.04 0.37 5.22 36.01 0.19 0.56 16 10 C 0.51 6.25 7.91 -10.98 -0.09 6.16 16 11 O -0.52 -8.74 16.50 -14.35 -0.24 -8.98 16 12 N -0.72 -7.61 5.50 -60.29 -0.33 -7.95 16 13 C 0.09 1.13 5.31 -4.04 -0.02 1.11 16 14 C 0.09 1.30 3.09 -26.73 -0.08 1.21 16 15 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 16 O -0.55 -8.31 13.03 -35.23 -0.46 -8.77 16 17 C 0.13 2.38 5.92 -4.04 -0.02 2.36 16 18 N -0.73 -18.05 5.49 -59.91 -0.33 -18.38 16 19 C -0.25 -6.85 9.99 -15.06 -0.15 -7.01 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.31 5.50 -17.44 -0.10 -0.40 16 22 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.21 -1.69 9.04 -39.43 -0.36 -2.05 16 28 C -0.07 -0.54 8.70 -39.61 -0.34 -0.88 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 7.38 -51.93 -0.38 -0.11 16 32 H 0.08 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.28 7.39 -51.93 -0.38 -0.11 16 36 H 0.13 0.70 7.94 -52.49 -0.42 0.28 16 37 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 39 H 0.09 0.62 7.65 -51.93 -0.40 0.22 16 40 H 0.41 3.43 8.47 -40.82 -0.35 3.08 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.37 4.72 9.05 45.56 0.41 5.13 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.39 10.36 7.54 -40.82 -0.31 10.05 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.13 0.79 6.30 -52.48 -0.33 0.46 16 49 H 0.12 0.69 7.09 -52.48 -0.37 0.32 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -35.14 408.87 -9.11 -44.25 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.11 Total: 10.84 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.13 Total: -3.28 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.06 Total: -53.68 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.08 Total: -21.56 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.14 -9.11 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320249107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.696 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds