Wall clock time and date at job start Sat Apr 11 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46804 * 2 1 4 4 C 1.50696 * 109.47022 * 119.99885 * 2 1 3 5 5 C 1.38268 * 119.94323 * 120.00168 * 4 2 1 6 6 C 1.38139 * 120.05525 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94491 * 0.02562 * 6 5 4 8 8 O 1.35905 * 120.05258 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99604 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46992 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99890 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99647 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99752 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47293 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47051 * 305.00100 * 14 13 12 16 16 O 1.42905 * 109.46986 * 65.00054 * 14 13 12 17 17 C 1.53001 * 109.47410 * 185.00013 * 14 13 12 18 18 N 1.46498 * 109.47388 * 179.97438 * 17 14 13 19 19 C 1.36939 * 120.00068 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99809 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99806 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00349 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46965 * 60.00315 * 23 21 19 25 25 H 1.48495 * 109.47181 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47064 * 300.00706 * 23 21 19 27 27 C 1.38722 * 119.88959 * 0.27067 * 7 6 5 28 28 C 1.38150 * 119.94161 * 359.47389 * 27 7 6 29 29 H 1.09002 * 109.47451 * 60.00088 * 1 2 3 30 30 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46962 * 300.00017 * 1 2 3 32 32 H 1.09001 * 109.46962 * 239.99983 * 2 1 3 33 33 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47497 * 299.99877 * 3 2 1 35 35 H 1.08998 * 109.47624 * 59.99784 * 3 2 1 36 36 H 1.07994 * 119.97151 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.02930 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47352 * 299.99771 * 9 8 7 39 39 H 1.08999 * 109.47144 * 59.99795 * 9 8 7 40 40 H 0.96995 * 120.00267 * 0.02562 * 12 10 9 41 41 H 1.09006 * 109.47300 * 299.99891 * 13 12 10 42 42 H 1.08999 * 109.47172 * 60.00041 * 13 12 10 43 43 H 0.96697 * 114.00044 * 60.00040 * 16 14 13 44 44 H 1.09004 * 109.47085 * 300.00067 * 17 14 13 45 45 H 1.09004 * 109.46957 * 59.99731 * 17 14 13 46 46 H 0.97000 * 120.00248 * 0.02562 * 18 17 14 47 47 H 0.97002 * 120.00158 * 179.97438 * 22 21 19 48 48 H 1.08006 * 120.03385 * 179.72149 * 27 7 6 49 49 H 1.08007 * 119.97071 * 180.23081 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8272 -1.8344 1.1023 6 6 3.2894 -2.4871 2.2286 7 6 2.9549 -2.0141 3.4892 8 8 3.4088 -2.6543 4.5988 9 6 3.0252 -2.1109 5.8636 10 6 3.6167 -2.9466 6.9695 11 8 4.2991 -3.9125 6.7010 12 7 3.3873 -2.6204 8.2569 13 6 3.9619 -3.4331 9.3320 14 6 3.5513 -2.8513 10.6862 15 1 3.8402 -1.8013 10.7332 16 8 2.1353 -2.9633 10.8431 17 6 4.2512 -3.6235 11.8064 18 7 3.8585 -3.0661 13.1030 19 6 4.3624 -3.6003 14.2588 20 1 5.0496 -4.4323 14.2145 21 6 3.9908 -3.0718 15.4874 22 7 3.1537 -2.0576 15.5414 23 14 4.6787 -3.8000 17.0641 24 1 6.1593 -3.6855 17.0574 25 1 4.1300 -3.0627 18.2304 26 1 4.2933 -5.2311 17.1577 27 6 2.1522 -0.8898 3.6152 28 6 1.6969 -0.2375 2.4856 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.0870 -2.2025 0.1207 37 1 3.9099 -3.3654 2.1280 38 1 3.3912 -1.0876 5.9456 39 1 1.9384 -2.1158 5.9466 40 1 2.8412 -1.8481 8.4717 41 1 3.5946 -4.4561 9.2501 42 1 5.0487 -3.4294 9.2490 43 1 1.8068 -3.8722 10.8116 44 1 3.9623 -4.6735 11.7593 45 1 5.3313 -3.5381 11.6866 46 1 3.2410 -2.3191 13.1429 47 1 2.8937 -1.6885 16.4000 48 1 1.8867 -0.5222 4.5954 49 1 1.0750 0.6401 2.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320249107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:40 Heat of formation + Delta-G solvation = -125.144930 kcal Electronic energy + Delta-G solvation = -27342.468421 eV Core-core repulsion = 23268.702428 eV Total energy + Delta-G solvation = -4073.765993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51079 -40.63630 -39.18667 -38.66418 -36.08752 -35.65371 -35.37361 -33.21094 -32.05859 -31.34548 -30.18746 -28.87415 -27.92771 -26.78617 -24.50133 -24.25628 -23.32530 -22.78333 -21.52454 -20.92366 -19.39406 -19.25287 -18.60432 -17.57213 -17.52775 -17.19901 -16.94278 -16.44617 -16.34726 -16.12943 -15.57893 -15.49535 -15.30063 -15.13456 -14.90183 -14.61099 -14.38822 -14.21817 -14.18016 -13.94882 -13.86416 -13.40751 -13.39190 -13.19157 -12.96492 -12.92677 -12.72206 -12.20550 -12.18263 -12.11793 -11.98237 -11.80885 -11.72391 -11.66634 -11.48027 -11.21111 -10.97609 -10.84814 -10.24605 -9.94690 -9.04471 -9.01077 -7.94924 -5.24339 0.39813 0.44722 1.43047 1.46901 1.49284 1.50700 1.57059 2.53423 2.63601 2.79173 3.35711 3.43580 3.55056 3.60332 3.79955 3.85785 3.92633 4.01066 4.05982 4.08669 4.18680 4.20427 4.37935 4.39914 4.44552 4.49635 4.60277 4.60371 4.69449 4.74201 4.85499 4.93419 4.98936 5.04613 5.10178 5.16133 5.18736 5.26641 5.33938 5.38204 5.43659 5.46243 5.47996 5.75311 5.82596 6.26013 6.31032 6.46503 6.78586 7.08616 7.33735 8.08973 8.32410 9.27849 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.001433 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.795742 B =19538.980905 C =20084.903491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.117 4.117 5 C -0.083 4.083 6 C -0.165 4.165 7 C 0.103 3.897 8 O -0.321 6.321 9 C 0.044 3.956 10 C 0.513 3.487 11 O -0.573 6.573 12 N -0.703 5.703 13 C 0.103 3.897 14 C 0.109 3.891 15 H 0.106 0.894 16 O -0.562 6.562 17 C 0.120 3.880 18 N -0.739 5.739 19 C -0.252 4.252 20 H 0.075 0.925 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.278 1.278 27 C -0.209 4.209 28 C -0.078 4.078 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.420 0.580 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.385 0.615 44 H 0.030 0.970 45 H 0.033 0.967 46 H 0.378 0.622 47 H 0.251 0.749 48 H 0.149 0.851 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 6.620 -34.261 35.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.201 4.201 4 C -0.118 4.118 5 C -0.100 4.100 6 C -0.184 4.184 7 C 0.059 3.941 8 O -0.235 6.235 9 C -0.034 4.034 10 C 0.299 3.701 11 O -0.452 6.452 12 N -0.357 5.357 13 C -0.022 4.022 14 C 0.050 3.950 15 H 0.123 0.877 16 O -0.369 6.369 17 C -0.007 4.007 18 N -0.382 5.382 19 C -0.384 4.384 20 H 0.093 0.907 21 C -0.265 4.265 22 N -0.616 5.616 23 Si 0.802 3.198 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.204 1.204 27 C -0.227 4.227 28 C -0.096 4.096 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.257 0.743 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.234 0.766 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.210 0.790 47 H 0.060 0.940 48 H 0.167 0.833 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.918 6.287 -34.288 35.205 hybrid contribution -0.009 -0.466 1.442 1.516 sum -4.927 5.821 -32.846 33.720 Atomic orbital electron populations 1.21865 0.93914 1.01831 1.02498 1.20095 0.96200 0.96110 0.94581 1.21862 1.00886 0.94862 1.02499 1.20067 0.99485 0.96628 0.95587 1.21104 0.96154 0.94613 0.98167 1.20616 1.04876 1.02897 0.90017 1.19272 0.95462 0.92949 0.86441 1.86104 1.71218 1.53359 1.12786 1.22597 1.02309 0.98038 0.80451 1.20563 0.80406 0.84953 0.84193 1.90739 1.40327 1.30151 1.83983 1.45592 1.53468 1.32574 1.04090 1.21889 0.99416 0.95279 0.85615 1.22089 0.81374 1.00799 0.90780 0.87653 1.86552 1.20701 1.33872 1.95726 1.21410 0.97527 0.96196 0.85577 1.42379 1.55230 1.39866 1.00728 1.19607 1.20997 1.11974 0.85788 0.90686 1.25563 1.00786 0.99292 1.00851 1.69818 1.38962 1.28053 1.24811 0.85220 0.77926 0.77625 0.79014 1.20390 1.22088 1.20416 1.21506 1.02616 0.97222 1.01361 1.21040 0.98146 0.99308 0.91107 0.91425 0.93123 0.92323 0.89984 0.93127 0.91426 0.92323 0.83733 0.85621 0.86027 0.86069 0.74269 0.90853 0.90504 0.76586 0.95237 0.94899 0.78986 0.93978 0.83297 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.01 71.98 0.65 -0.47 16 2 C -0.05 -0.46 3.09 -11.54 -0.04 -0.49 16 3 C -0.14 -1.12 9.01 71.98 0.65 -0.47 16 4 C -0.12 -1.51 4.78 -19.85 -0.09 -1.60 16 5 C -0.08 -1.20 9.66 22.25 0.22 -0.98 16 6 C -0.17 -3.11 9.99 22.36 0.22 -2.89 16 7 C 0.10 2.04 6.69 22.50 0.15 2.19 16 8 O -0.32 -7.53 9.67 -73.44 -0.71 -8.24 16 9 C 0.04 0.71 5.22 71.24 0.37 1.09 16 10 C 0.51 11.99 7.91 87.66 0.69 12.69 16 11 O -0.57 -19.42 16.50 16.03 0.26 -19.15 16 12 N -0.70 -13.79 5.50 -463.06 -2.55 -16.34 16 13 C 0.10 2.42 5.31 86.38 0.46 2.88 16 14 C 0.11 3.04 3.09 30.59 0.09 3.14 16 15 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 16 O -0.56 -16.13 13.03 -148.98 -1.94 -18.08 16 17 C 0.12 4.43 5.92 86.38 0.51 4.95 16 18 N -0.74 -36.62 5.49 -343.45 -1.89 -38.50 16 19 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 20 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 23 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 C -0.21 -3.03 9.04 22.36 0.20 -2.83 16 28 C -0.08 -0.99 8.70 22.25 0.19 -0.79 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.44 7.38 -2.39 -0.02 0.42 16 32 H 0.08 0.64 7.87 -2.39 -0.02 0.62 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 35 H 0.06 0.44 7.39 -2.39 -0.02 0.42 16 36 H 0.14 1.46 7.94 -2.91 -0.02 1.43 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.12 1.26 7.67 -2.39 -0.02 1.24 16 39 H 0.12 1.28 7.65 -2.39 -0.02 1.26 16 40 H 0.42 6.08 8.47 -92.71 -0.79 5.30 16 41 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.39 9.17 9.05 -74.06 -0.67 8.50 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.38 20.20 7.54 -92.71 -0.70 19.50 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 48 H 0.15 1.40 6.30 -2.91 -0.02 1.38 16 49 H 0.14 1.21 7.09 -2.91 -0.02 1.19 16 Total: -1.00 -76.22 408.87 -0.10 -76.33 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -1.18 Total: 35.12 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.59 Total: -0.36 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.15 Total: -113.42 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.39 Total: -45.47 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -76.22 -0.10 -76.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320249107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.817 kcal (2) G-P(sol) polarization free energy of solvation -76.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds