Wall clock time and date at job start Sat Apr 11 2020 04:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.46848 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00732 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47149 * 179.97438 * 13 12 10 15 15 H 1.09006 * 109.46948 * 59.99675 * 14 13 12 16 16 O 1.42894 * 109.47181 * 299.99723 * 14 13 12 17 17 C 1.53001 * 109.47019 * 179.97438 * 14 13 12 18 18 N 1.46506 * 109.46791 * 185.00147 * 17 14 13 19 19 C 1.36941 * 119.99680 * 180.02562 * 18 17 14 20 20 H 1.07994 * 120.00057 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99563 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00305 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99822 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47173 * 89.99981 * 23 21 19 25 25 H 1.48504 * 109.47277 * 210.00300 * 23 21 19 26 26 H 1.48500 * 109.47245 * 330.00118 * 23 21 19 27 27 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 28 28 C 1.38139 * 119.94262 * 359.97438 * 27 7 6 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 38 38 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 39 39 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 40 40 H 0.97006 * 119.99495 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.46957 * 299.99630 * 13 12 10 42 42 H 1.08997 * 109.47609 * 59.99426 * 13 12 10 43 43 H 0.96695 * 114.00342 * 300.00410 * 16 14 13 44 44 H 1.08999 * 109.47172 * 304.99442 * 17 14 13 45 45 H 1.08996 * 109.47087 * 65.00053 * 17 14 13 46 46 H 0.96998 * 119.99778 * 359.97438 * 18 17 14 47 47 H 0.96998 * 119.99577 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.02456 * 179.97438 * 27 7 6 49 49 H 1.07998 * 119.97261 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6122 -2.9495 -6.9696 11 8 4.2937 -3.9161 -6.7012 12 7 3.3823 -2.6237 -8.2571 13 6 3.9551 -3.4375 -9.3321 14 6 3.5442 -2.8560 -10.6863 15 1 3.9121 -1.8333 -10.7693 16 8 2.1193 -2.8597 -10.7937 17 6 4.1429 -3.7056 -11.8091 18 7 3.8501 -3.0824 -13.1022 19 6 4.2889 -3.6683 -14.2596 20 1 4.8511 -4.5895 -14.2190 21 6 4.0109 -3.0781 -15.4849 22 7 3.3261 -1.9552 -15.5343 23 14 4.6088 -3.8777 -17.0637 24 1 3.5756 -4.8198 -17.5635 25 1 4.8588 -2.8295 -18.0855 26 1 5.8675 -4.6193 -16.7972 27 6 3.2885 -2.4877 -2.2287 28 6 2.8276 -1.8341 -1.1023 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.0679 0.6351 -2.5831 37 1 1.8946 -0.5164 -4.5955 38 1 1.9356 -2.1162 -5.9460 39 1 3.3897 -1.0896 -5.9464 40 1 2.8369 -1.8508 -8.4718 41 1 5.0420 -3.4350 -9.2499 42 1 3.5869 -4.4601 -9.2494 43 1 1.7222 -3.7389 -10.7285 44 1 5.2225 -3.7754 -11.6756 45 1 3.7079 -4.7045 -11.7803 46 1 3.3448 -2.2553 -13.1386 47 1 3.1323 -1.5427 -16.3905 48 1 3.9087 -3.3660 -2.1281 49 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320249108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:43 Heat of formation + Delta-G solvation = -100.147623 kcal Electronic energy + Delta-G solvation = -27343.997103 eV Core-core repulsion = 23271.315074 eV Total energy + Delta-G solvation = -4072.682028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77779 -39.76616 -38.36617 -37.56098 -35.15690 -34.48743 -34.05694 -31.51439 -31.36638 -30.32214 -29.24132 -27.91554 -27.57126 -25.24130 -23.72100 -23.04763 -22.39839 -21.51255 -20.55353 -20.41648 -18.70566 -17.75623 -17.19382 -16.74411 -16.47816 -16.30824 -15.86435 -15.76195 -15.23649 -14.79941 -14.60067 -14.52938 -14.46895 -13.92990 -13.90166 -13.72982 -13.67903 -13.32352 -13.04061 -12.95831 -12.76834 -12.71268 -12.50315 -12.33025 -11.91797 -11.70321 -11.61673 -11.21219 -11.17467 -11.00568 -10.99015 -10.84119 -10.69144 -10.22027 -10.12103 -9.84668 -9.56314 -9.36070 -9.25312 -8.93660 -8.42051 -6.97654 -5.79455 -3.09324 0.98259 1.05891 2.28175 2.36499 3.38339 3.39989 3.41879 3.47234 3.48760 4.25102 4.28117 4.39572 4.47583 4.51529 4.62517 4.65742 4.66771 4.69116 4.76610 4.81430 4.96933 4.99144 5.11236 5.16761 5.18762 5.26084 5.39520 5.42844 5.52274 5.53357 5.55789 5.66381 5.71596 5.77519 5.79783 5.88422 5.93652 6.01393 6.12803 6.24520 6.28830 6.39286 6.46668 6.61793 7.00232 7.28563 7.65697 7.85621 7.99394 8.38576 9.50428 10.06221 10.41891 11.42857 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.032735 B = 0.001433 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.136264 B =19529.104250 C =20079.469124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.208 4.208 7 C 0.126 3.874 8 O -0.290 6.290 9 C 0.042 3.958 10 C 0.513 3.487 11 O -0.520 6.520 12 N -0.717 5.717 13 C 0.091 3.909 14 C 0.089 3.911 15 H 0.106 0.894 16 O -0.553 6.553 17 C 0.127 3.873 18 N -0.726 5.726 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.146 4.146 28 C -0.078 4.078 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.407 0.593 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.374 0.626 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.388 0.612 47 H 0.256 0.744 48 H 0.132 0.868 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 5.620 33.173 34.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.117 4.117 5 C -0.092 4.092 6 C -0.226 4.226 7 C 0.081 3.919 8 O -0.202 6.202 9 C -0.037 4.037 10 C 0.297 3.703 11 O -0.395 6.395 12 N -0.371 5.371 13 C -0.033 4.033 14 C 0.029 3.971 15 H 0.124 0.876 16 O -0.358 6.358 17 C -0.002 4.002 18 N -0.371 5.371 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.164 4.164 28 C -0.096 4.096 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.242 0.758 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.221 0.779 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.223 0.777 47 H 0.065 0.935 48 H 0.150 0.850 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.600 5.270 33.157 33.887 hybrid contribution -0.264 -0.208 -1.196 1.243 sum -4.864 5.062 31.961 32.722 Atomic orbital electron populations 1.21873 0.94425 1.02047 1.01894 1.20059 0.95851 0.95941 0.95238 1.21871 1.01291 0.95180 1.01891 1.19779 1.00195 0.96997 0.94711 1.20752 0.98185 0.98924 0.91307 1.21265 1.03383 0.97969 1.00010 1.19069 0.94197 0.91817 0.86821 1.86161 1.70346 1.52006 1.11687 1.22469 1.00957 0.97867 0.82404 1.19981 0.81362 0.85497 0.83432 1.90763 1.37836 1.27696 1.83230 1.45737 1.54005 1.32573 1.04740 1.22149 0.99635 0.95195 0.86312 1.22410 0.81731 1.01519 0.91420 0.87612 1.86571 1.18930 1.34366 1.95938 1.21201 0.97621 0.94824 0.86540 1.42231 1.66501 1.28804 0.99519 1.19222 1.28497 1.05304 0.84594 0.91177 1.24757 1.00826 0.97506 0.97680 1.69676 1.44193 1.19337 1.24606 0.86177 0.78287 0.78168 0.83461 1.21661 1.21707 1.20723 1.20445 1.04164 1.02501 0.89316 1.20871 0.96330 0.94486 0.97905 0.92439 0.92478 0.92503 0.90550 0.92488 0.92436 0.92502 0.85820 0.85350 0.88829 0.88862 0.75814 0.90163 0.90826 0.77903 0.95291 0.95853 0.77735 0.93459 0.84993 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.00 37.16 0.33 -0.37 16 2 C -0.05 -0.28 3.09 -91.77 -0.28 -0.57 16 3 C -0.15 -0.71 9.01 37.16 0.33 -0.37 16 4 C -0.12 -0.83 4.78 -104.60 -0.50 -1.33 16 5 C -0.07 -0.54 8.70 -39.60 -0.34 -0.88 16 6 C -0.21 -1.69 9.04 -39.44 -0.36 -2.05 16 7 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 8 O -0.29 -3.43 9.67 -39.35 -0.38 -3.81 16 9 C 0.04 0.38 5.22 36.00 0.19 0.56 16 10 C 0.51 6.25 7.91 -10.98 -0.09 6.16 16 11 O -0.52 -8.74 16.50 -14.35 -0.24 -8.97 16 12 N -0.72 -7.61 5.45 -60.30 -0.33 -7.94 16 13 C 0.09 1.13 5.34 -4.04 -0.02 1.11 16 14 C 0.09 1.29 3.08 -26.73 -0.08 1.21 16 15 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 16 O -0.55 -8.18 13.03 -35.23 -0.46 -8.64 16 17 C 0.13 2.39 5.90 -4.04 -0.02 2.36 16 18 N -0.73 -18.06 5.55 -59.91 -0.33 -18.39 16 19 C -0.25 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 23 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.15 -1.35 9.99 -39.43 -0.39 -1.74 16 28 C -0.08 -0.59 9.66 -39.61 -0.38 -0.97 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.28 7.37 -51.93 -0.38 -0.11 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.06 0.28 7.40 -51.93 -0.38 -0.11 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.12 0.69 7.09 -52.49 -0.37 0.32 16 37 H 0.13 0.79 6.30 -52.48 -0.33 0.46 16 38 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 39 H 0.09 0.61 7.66 -51.93 -0.40 0.21 16 40 H 0.41 3.46 8.35 -40.82 -0.34 3.12 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.37 4.57 9.05 45.56 0.41 4.98 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.39 10.32 7.67 -40.82 -0.31 10.01 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 49 H 0.13 0.70 7.94 -52.49 -0.42 0.28 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -35.14 408.87 -9.11 -44.25 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.11 Total: 10.69 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.13 Total: -3.27 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.06 Total: -53.69 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.08 Total: -21.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.14 -9.11 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320249108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.898 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds