Wall clock time and date at job start Sat Apr 11 2020 04:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.46848 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00732 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47149 * 179.97438 * 13 12 10 15 15 H 1.09006 * 109.46948 * 59.99675 * 14 13 12 16 16 O 1.42894 * 109.47181 * 299.99723 * 14 13 12 17 17 C 1.53001 * 109.47019 * 179.97438 * 14 13 12 18 18 N 1.46506 * 109.46791 * 185.00147 * 17 14 13 19 19 C 1.36941 * 119.99680 * 180.02562 * 18 17 14 20 20 H 1.07994 * 120.00057 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99563 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00305 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99822 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47173 * 89.99981 * 23 21 19 25 25 H 1.48504 * 109.47277 * 210.00300 * 23 21 19 26 26 H 1.48500 * 109.47245 * 330.00118 * 23 21 19 27 27 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 28 28 C 1.38139 * 119.94262 * 359.97438 * 27 7 6 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 38 38 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 39 39 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 40 40 H 0.97006 * 119.99495 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.46957 * 299.99630 * 13 12 10 42 42 H 1.08997 * 109.47609 * 59.99426 * 13 12 10 43 43 H 0.96695 * 114.00342 * 300.00410 * 16 14 13 44 44 H 1.08999 * 109.47172 * 304.99442 * 17 14 13 45 45 H 1.08996 * 109.47087 * 65.00053 * 17 14 13 46 46 H 0.96998 * 119.99778 * 359.97438 * 18 17 14 47 47 H 0.96998 * 119.99577 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.02456 * 179.97438 * 27 7 6 49 49 H 1.07998 * 119.97261 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6122 -2.9495 -6.9696 11 8 4.2937 -3.9161 -6.7012 12 7 3.3823 -2.6237 -8.2571 13 6 3.9551 -3.4375 -9.3321 14 6 3.5442 -2.8560 -10.6863 15 1 3.9121 -1.8333 -10.7693 16 8 2.1193 -2.8597 -10.7937 17 6 4.1429 -3.7056 -11.8091 18 7 3.8501 -3.0824 -13.1022 19 6 4.2889 -3.6683 -14.2596 20 1 4.8511 -4.5895 -14.2190 21 6 4.0109 -3.0781 -15.4849 22 7 3.3261 -1.9552 -15.5343 23 14 4.6088 -3.8777 -17.0637 24 1 3.5756 -4.8198 -17.5635 25 1 4.8588 -2.8295 -18.0855 26 1 5.8675 -4.6193 -16.7972 27 6 3.2885 -2.4877 -2.2287 28 6 2.8276 -1.8341 -1.1023 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.0679 0.6351 -2.5831 37 1 1.8946 -0.5164 -4.5955 38 1 1.9356 -2.1162 -5.9460 39 1 3.3897 -1.0896 -5.9464 40 1 2.8369 -1.8508 -8.4718 41 1 5.0420 -3.4350 -9.2499 42 1 3.5869 -4.4601 -9.2494 43 1 1.7222 -3.7389 -10.7285 44 1 5.2225 -3.7754 -11.6756 45 1 3.7079 -4.7045 -11.7803 46 1 3.3448 -2.2553 -13.1386 47 1 3.1323 -1.5427 -16.3905 48 1 3.9087 -3.3660 -2.1281 49 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320249108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:43 Heat of formation + Delta-G solvation = -125.346184 kcal Electronic energy + Delta-G solvation = -27345.089794 eV Core-core repulsion = 23271.315074 eV Total energy + Delta-G solvation = -4073.774720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51004 -40.63690 -39.18901 -38.66172 -36.10489 -35.65351 -35.35753 -33.22460 -32.05847 -31.34308 -30.18811 -28.87566 -27.92788 -26.78844 -24.50172 -24.25614 -23.32682 -22.78592 -21.52761 -20.92362 -19.39391 -19.25676 -18.60684 -17.57118 -17.53143 -17.18682 -16.95912 -16.43885 -16.34882 -16.14020 -15.57351 -15.49695 -15.30005 -15.13528 -14.89483 -14.61205 -14.38965 -14.21962 -14.20053 -13.94473 -13.85817 -13.40776 -13.39300 -13.19449 -12.97061 -12.92831 -12.75752 -12.18323 -12.16407 -12.11655 -11.98148 -11.81668 -11.72368 -11.66617 -11.47935 -11.20566 -10.98940 -10.85864 -10.24398 -9.94688 -9.04398 -9.01565 -7.95630 -5.24956 0.39867 0.44718 1.43097 1.46811 1.49134 1.49339 1.57862 2.53115 2.63407 2.79194 3.35389 3.44121 3.55383 3.59953 3.79982 3.85809 3.92647 3.99570 4.06026 4.08557 4.18701 4.20949 4.37965 4.39307 4.44582 4.49657 4.60302 4.60421 4.69449 4.74234 4.85530 4.93662 4.98982 5.04644 5.10225 5.16154 5.19701 5.25572 5.33977 5.38251 5.43698 5.46274 5.48038 5.75348 5.82617 6.25656 6.31194 6.46680 6.78759 7.08861 7.33143 8.08061 8.31269 9.27460 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.032735 B = 0.001433 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.136264 B =19529.104250 C =20079.469124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.117 4.117 5 C -0.078 4.078 6 C -0.209 4.209 7 C 0.103 3.897 8 O -0.321 6.321 9 C 0.044 3.956 10 C 0.513 3.487 11 O -0.573 6.573 12 N -0.703 5.703 13 C 0.102 3.898 14 C 0.110 3.890 15 H 0.104 0.896 16 O -0.562 6.562 17 C 0.121 3.879 18 N -0.739 5.739 19 C -0.250 4.250 20 H 0.076 0.924 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.270 1.270 27 C -0.165 4.165 28 C -0.083 4.083 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.420 0.580 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.386 0.614 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.126 0.874 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 6.337 34.306 35.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.201 4.201 4 C -0.118 4.118 5 C -0.096 4.096 6 C -0.227 4.227 7 C 0.059 3.941 8 O -0.235 6.235 9 C -0.034 4.034 10 C 0.299 3.701 11 O -0.452 6.452 12 N -0.357 5.357 13 C -0.022 4.022 14 C 0.050 3.950 15 H 0.122 0.878 16 O -0.368 6.368 17 C -0.007 4.007 18 N -0.382 5.382 19 C -0.382 4.382 20 H 0.094 0.906 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.195 1.195 27 C -0.184 4.184 28 C -0.100 4.100 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.258 0.742 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.235 0.765 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.144 0.856 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.324 5.981 34.319 35.241 hybrid contribution -0.058 -0.445 -1.442 1.510 sum -5.382 5.536 32.877 33.772 Atomic orbital electron populations 1.21863 0.93912 1.01834 1.02501 1.20095 0.96203 0.96106 0.94581 1.21861 1.00885 0.94865 1.02496 1.20070 0.99463 0.96651 0.95587 1.21040 0.98096 0.99355 0.91106 1.21505 1.02646 0.97193 1.01360 1.19275 0.95514 0.92895 0.86440 1.86104 1.71300 1.53277 1.12785 1.22594 1.02330 0.98012 0.80448 1.20563 0.80392 0.84970 0.84189 1.90741 1.40342 1.30133 1.83990 1.45577 1.53533 1.32527 1.04057 1.21876 0.99441 0.95286 0.85626 1.22079 0.81481 1.00557 0.90893 0.87822 1.86551 1.18809 1.35535 1.95930 1.21421 0.98140 0.95536 0.85560 1.42404 1.66275 1.28595 1.00964 1.19644 1.27517 1.05203 0.85841 0.90642 1.25567 1.01767 0.98330 1.00885 1.69827 1.46029 1.20931 1.24926 0.85146 0.78118 0.77101 0.79411 1.21382 1.22126 1.19466 1.20616 1.04859 1.02914 0.90014 1.21104 0.96180 0.94587 0.98167 0.91426 0.92318 0.93118 0.89984 0.92336 0.91419 0.93131 0.83938 0.83303 0.86044 0.86061 0.74238 0.90563 0.90800 0.76537 0.94891 0.95146 0.79073 0.93977 0.85621 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.00 71.98 0.65 -0.47 16 2 C -0.05 -0.46 3.09 -11.54 -0.04 -0.49 16 3 C -0.14 -1.12 9.01 71.98 0.65 -0.47 16 4 C -0.12 -1.51 4.78 -19.85 -0.09 -1.60 16 5 C -0.08 -0.99 8.70 22.26 0.19 -0.79 16 6 C -0.21 -3.03 9.04 22.36 0.20 -2.83 16 7 C 0.10 2.04 6.69 22.51 0.15 2.19 16 8 O -0.32 -7.53 9.67 -73.44 -0.71 -8.24 16 9 C 0.04 0.72 5.22 71.23 0.37 1.09 16 10 C 0.51 11.99 7.91 87.65 0.69 12.68 16 11 O -0.57 -19.41 16.50 16.01 0.26 -19.15 16 12 N -0.70 -13.79 5.45 -463.07 -2.52 -16.31 16 13 C 0.10 2.42 5.34 86.38 0.46 2.88 16 14 C 0.11 3.05 3.08 30.60 0.09 3.15 16 15 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 16 O -0.56 -15.77 13.03 -148.98 -1.94 -17.71 16 17 C 0.12 4.45 5.90 86.38 0.51 4.96 16 18 N -0.74 -36.64 5.55 -343.44 -1.91 -38.55 16 19 C -0.25 -13.85 9.99 84.03 0.84 -13.02 16 20 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 22 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 23 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 C -0.17 -3.11 9.99 22.37 0.22 -2.88 16 28 C -0.08 -1.19 9.66 22.25 0.22 -0.98 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.44 7.37 -2.39 -0.02 0.42 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.64 7.87 -2.39 -0.02 0.62 16 33 H 0.06 0.44 7.40 -2.39 -0.02 0.42 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.14 1.21 7.09 -2.91 -0.02 1.19 16 37 H 0.15 1.40 6.30 -2.91 -0.02 1.38 16 38 H 0.12 1.27 7.66 -2.39 -0.02 1.26 16 39 H 0.12 1.27 7.66 -2.38 -0.02 1.25 16 40 H 0.42 6.15 8.35 -92.70 -0.77 5.38 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.39 8.80 9.05 -74.06 -0.67 8.13 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.38 20.16 7.67 -92.71 -0.71 19.44 16 47 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 49 H 0.14 1.46 7.94 -2.91 -0.02 1.43 16 Total: -1.00 -76.24 408.87 -0.10 -76.33 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -1.18 Total: 34.70 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.59 Total: -0.29 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -4.15 Total: -113.50 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -2.39 Total: -45.09 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.24 -0.10 -76.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320249108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.013 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds