Wall clock time and date at job start Sat Apr 11 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35903 * 116.99846 * 2 1 4 4 C 1.38750 * 120.05787 * 359.72705 * 3 2 1 5 5 C 1.38122 * 119.94605 * 179.70187 * 4 3 2 6 6 C 1.38290 * 120.05216 * 0.59086 * 5 4 3 7 7 C 1.38244 * 120.11256 * 359.68547 * 6 5 4 8 8 C 1.50700 * 119.97305 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47084 * 5.54215 * 8 7 6 10 10 C 1.52997 * 109.47036 * 125.54412 * 8 7 6 11 11 C 1.50702 * 109.47030 * 245.54516 * 8 7 6 12 12 O 1.21280 * 120.00212 * 5.52689 * 11 8 7 13 13 N 1.34778 * 119.99916 * 185.52672 * 11 8 7 14 14 C 1.46503 * 119.99991 * 180.02562 * 13 11 8 15 15 C 1.53000 * 109.47133 * 180.02562 * 14 13 11 16 16 H 1.08993 * 109.47312 * 59.99466 * 15 14 13 17 17 O 1.42898 * 109.46535 * 299.99725 * 15 14 13 18 18 C 1.52995 * 109.46930 * 179.97438 * 15 14 13 19 19 N 1.46507 * 109.47048 * 184.99771 * 18 15 14 20 20 C 1.36934 * 120.00040 * 179.97438 * 19 18 15 21 21 H 1.07998 * 119.99814 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99928 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00258 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99998 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46976 * 90.00403 * 24 22 20 26 26 H 1.48503 * 109.47343 * 209.99631 * 24 22 20 27 27 H 1.48495 * 109.47282 * 330.00136 * 24 22 20 28 28 C 1.38165 * 120.05455 * 0.02562 * 7 6 5 29 29 H 1.08997 * 109.47035 * 299.99975 * 1 2 3 30 30 H 1.09003 * 109.46729 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08008 * 120.02822 * 359.97242 * 4 3 2 33 33 H 1.07998 * 119.97243 * 180.29980 * 5 4 3 34 34 H 1.08001 * 119.94445 * 179.69990 * 6 5 4 35 35 H 1.09004 * 109.47232 * 60.00325 * 9 8 7 36 36 H 1.09002 * 109.47136 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47387 * 300.00490 * 9 8 7 38 38 H 1.09002 * 109.47271 * 60.00095 * 10 8 7 39 39 H 1.09007 * 109.46803 * 179.97438 * 10 8 7 40 40 H 1.08991 * 109.47386 * 300.00271 * 10 8 7 41 41 H 0.96999 * 119.99750 * 0.02562 * 13 11 8 42 42 H 1.09006 * 109.46451 * 299.99715 * 14 13 11 43 43 H 1.08995 * 109.46987 * 59.99297 * 14 13 11 44 44 H 0.96708 * 114.00398 * 299.99785 * 17 15 14 45 45 H 1.09000 * 109.46995 * 304.99307 * 18 15 14 46 46 H 1.08997 * 109.47417 * 64.99512 * 18 15 14 47 47 H 0.96999 * 119.99320 * 359.97438 * 19 18 15 48 48 H 0.97001 * 120.00131 * 180.02562 * 23 22 20 49 49 H 1.08001 * 120.03049 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9209 3.6048 0.0005 6 6 3.3020 3.6758 0.0001 7 6 4.0560 2.5171 0.0000 8 6 5.5609 2.5982 0.0002 9 6 5.9929 4.0592 0.1397 10 6 6.1151 1.7881 1.1738 11 6 6.0942 2.0380 -1.2932 12 8 5.3275 1.7076 -2.1729 13 7 7.4233 1.9043 -1.4724 14 6 7.9418 1.3603 -2.7300 15 6 9.4701 1.3143 -2.6741 16 1 9.7845 0.6789 -1.8463 17 8 9.9795 2.6354 -2.4806 18 6 10.0115 0.7456 -3.9872 19 7 11.4650 0.5900 -3.8894 20 6 12.1734 0.0937 -4.9510 21 1 11.6607 -0.1825 -5.8605 22 6 13.5506 -0.0532 -4.8586 23 7 14.2316 -0.5297 -5.8792 24 14 14.4376 0.4267 -3.2863 25 1 14.5011 -0.7451 -2.3763 26 1 15.8153 0.8753 -3.6122 27 1 13.7019 1.5314 -2.6203 28 6 3.4312 1.2849 -0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2129 2.3204 -0.0106 33 1 1.3340 4.5114 0.0010 34 1 3.7923 4.6381 0.0001 35 1 5.6071 4.4645 1.0752 36 1 7.0813 4.1178 0.1403 37 1 5.5979 4.6364 -0.6964 38 1 5.8073 0.7472 1.0744 39 1 7.2036 1.8464 1.1736 40 1 5.7293 2.1932 2.1092 41 1 8.0365 2.1683 -0.7687 42 1 7.5535 0.3525 -2.8773 43 1 7.6270 1.9956 -3.5578 44 1 9.7382 3.2566 -3.1813 45 1 9.5543 -0.2252 -4.1785 46 1 9.7732 1.4269 -4.8039 47 1 11.9255 0.8385 -3.0727 48 1 15.1939 -0.6327 -5.8144 49 1 4.0207 0.3799 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568586987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:07 Heat of formation + Delta-G solvation = -88.324505 kcal Electronic energy + Delta-G solvation = -28905.292677 eV Core-core repulsion = 24833.123337 eV Total energy + Delta-G solvation = -4072.169340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00637 -39.87854 -38.21234 -37.48837 -35.26573 -34.46545 -34.09390 -31.50377 -31.16843 -29.98483 -29.15425 -28.06021 -27.27131 -25.82393 -24.04101 -22.77927 -22.34352 -21.60797 -21.37811 -19.70125 -18.30402 -17.73814 -17.11840 -16.56079 -16.31972 -16.20987 -16.07147 -16.00595 -15.56942 -14.93384 -14.59753 -14.54021 -14.16953 -13.97582 -13.81603 -13.73717 -13.26978 -13.09132 -12.90019 -12.77134 -12.57675 -12.50538 -12.46621 -12.38322 -12.07257 -11.96212 -11.77576 -11.36676 -11.32098 -11.30138 -10.96100 -10.87801 -10.81245 -10.18389 -9.99174 -9.69538 -9.55038 -9.15074 -9.05884 -8.93626 -8.43363 -7.26869 -5.78366 -3.14753 1.04194 1.23033 2.53786 2.95180 3.01657 3.38666 3.44115 3.46059 3.57142 4.13352 4.40010 4.49093 4.54456 4.59107 4.60069 4.65907 4.71749 4.77736 4.80109 4.81448 5.00964 5.11342 5.12161 5.18101 5.25056 5.26956 5.36830 5.42242 5.45621 5.48651 5.50692 5.67620 5.74585 5.76409 5.77491 5.79423 5.86482 6.04453 6.17285 6.32012 6.33631 6.41556 6.47751 6.54030 7.13378 7.40011 7.75624 7.97215 8.13042 8.40013 9.19337 9.91249 10.10842 11.39623 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002046 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.613260 B =13683.916160 C =14251.165544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.210 4.210 5 C -0.082 4.082 6 C -0.151 4.151 7 C -0.019 4.019 8 C -0.042 4.042 9 C -0.143 4.143 10 C -0.141 4.141 11 C 0.521 3.479 12 O -0.530 6.530 13 N -0.719 5.719 14 C 0.090 3.910 15 C 0.085 3.915 16 H 0.104 0.896 17 O -0.557 6.557 18 C 0.131 3.869 19 N -0.749 5.749 20 C -0.248 4.248 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.273 1.273 28 C -0.123 4.123 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.404 0.596 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.376 0.624 45 H 0.038 0.962 46 H 0.032 0.968 47 H 0.365 0.635 48 H 0.260 0.740 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.813 9.202 18.215 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.228 4.228 5 C -0.100 4.100 6 C -0.169 4.169 7 C -0.019 4.019 8 C -0.045 4.045 9 C -0.200 4.200 10 C -0.199 4.199 11 C 0.306 3.694 12 O -0.406 6.406 13 N -0.372 5.372 14 C -0.034 4.034 15 C 0.025 3.975 16 H 0.122 0.878 17 O -0.362 6.362 18 C 0.003 3.997 19 N -0.395 5.395 20 C -0.378 4.378 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.581 5.581 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.199 1.199 28 C -0.142 4.142 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.239 0.761 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.223 0.777 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.199 0.801 48 H 0.070 0.930 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.974 8.389 17.862 34.234 hybrid contribution 0.499 0.686 0.680 1.087 sum -27.475 9.075 18.542 34.366 Atomic orbital electron populations 1.23044 0.78486 1.03919 1.01240 1.86087 1.21291 1.26982 1.88780 1.18932 0.92163 0.84157 0.96641 1.21209 0.99867 0.92489 1.09267 1.20864 0.94446 0.96905 0.97828 1.21034 0.93701 0.98119 1.04051 1.19029 0.92945 0.92592 0.97380 1.19725 0.92376 0.98072 0.94328 1.21953 1.02143 0.92858 1.03079 1.21935 1.01229 1.00121 0.96603 1.20311 0.82277 0.78226 0.88605 1.90742 1.56857 1.49059 1.43893 1.45887 1.06794 1.65488 1.19019 1.22072 0.94703 1.00330 0.86335 1.22447 0.89846 0.84889 1.00269 0.87789 1.86543 1.78246 1.20183 1.51210 1.21177 0.86361 0.98554 0.93624 1.42570 1.01673 1.78910 1.16393 1.19042 0.90083 1.34726 0.93927 0.89259 1.24678 0.96154 1.00966 0.97277 1.69707 1.07015 1.51232 1.30103 0.86532 0.79395 0.78555 0.84066 1.21105 1.21737 1.19869 1.20133 0.91249 0.98150 1.04638 0.92758 0.92660 0.88260 0.85675 0.85798 0.85394 0.90840 0.91270 0.91482 0.91588 0.91380 0.90976 0.76081 0.90283 0.90923 0.77682 0.94444 0.95054 0.80122 0.93014 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.40 10.50 -19.44 -0.20 -3.61 16 3 C 0.13 1.41 6.69 -39.22 -0.26 1.14 16 4 C -0.21 -1.93 9.04 -39.43 -0.36 -2.29 16 5 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 6 C -0.15 -1.39 8.99 -39.56 -0.36 -1.75 16 7 C -0.02 -0.20 4.24 -104.65 -0.44 -0.64 16 8 C -0.04 -0.38 0.72 -156.82 -0.11 -0.49 16 9 C -0.14 -1.00 7.11 37.15 0.26 -0.74 16 10 C -0.14 -1.04 8.07 37.16 0.30 -0.74 16 11 C 0.52 6.29 6.35 -10.98 -0.07 6.22 16 12 O -0.53 -8.57 15.53 5.56 0.09 -8.49 16 13 N -0.72 -7.73 5.28 -60.29 -0.32 -8.05 16 14 C 0.09 1.10 5.34 -4.04 -0.02 1.08 16 15 C 0.09 1.18 3.09 -26.73 -0.08 1.10 16 16 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 17 O -0.56 -7.75 13.03 -35.23 -0.46 -8.21 16 18 C 0.13 2.39 5.90 -4.04 -0.02 2.37 16 19 N -0.75 -17.63 5.35 -59.91 -0.32 -17.95 16 20 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 24 Si 0.88 22.23 27.73 -169.99 -4.71 17.52 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.27 -6.53 6.52 56.52 0.37 -6.16 16 28 C -0.12 -1.44 8.30 -39.43 -0.33 -1.77 16 29 H 0.05 0.26 7.67 -51.93 -0.40 -0.13 16 30 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.93 5.90 -52.49 -0.31 0.62 16 35 H 0.07 0.40 7.77 -51.93 -0.40 0.00 16 36 H 0.07 0.43 7.97 -51.93 -0.41 0.02 16 37 H 0.07 0.50 7.25 -51.93 -0.38 0.13 16 38 H 0.07 0.53 7.10 -51.93 -0.37 0.16 16 39 H 0.07 0.42 7.27 -51.92 -0.38 0.04 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.40 3.66 7.26 -40.82 -0.30 3.36 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.38 4.30 9.05 45.56 0.41 4.71 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.37 8.54 5.53 -40.82 -0.23 8.31 16 48 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 49 H 0.13 1.52 7.25 -52.49 -0.38 1.14 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -36.29 397.16 -7.16 -43.45 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.84 Total: 11.60 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.15 Total: -3.59 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.14 Total: -54.67 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.58 Total: -20.31 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.29 -7.16 -43.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568586987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.871 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds