Wall clock time and date at job start Sat Apr 11 2020 04:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 C 1.50693 * 109.47558 * 120.00242 * 2 1 3 5 5 C 1.38270 * 119.94727 * 119.99647 * 4 2 1 6 6 C 1.38138 * 120.05709 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94320 * 0.02562 * 6 5 4 8 8 O 1.35909 * 120.05192 * 179.97438 * 7 6 5 9 9 C 1.42894 * 116.99503 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46866 * 180.02562 * 9 8 7 11 11 O 1.21273 * 120.00280 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00398 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47346 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47177 * 65.00353 * 14 13 12 16 16 C 1.53006 * 109.47133 * 185.00123 * 14 13 12 17 17 O 1.42903 * 109.47139 * 55.00254 * 16 14 13 18 18 N 1.46493 * 109.47542 * 305.00099 * 14 13 12 19 19 C 1.36936 * 120.00314 * 154.99721 * 18 14 13 20 20 H 1.08001 * 120.00159 * 0.02562 * 19 18 14 21 21 C 1.38811 * 119.99842 * 180.02562 * 19 18 14 22 22 N 1.31624 * 119.99540 * 179.72505 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.38733 * 119.88983 * 0.27399 * 7 6 5 28 28 C 1.38145 * 119.94129 * 359.46847 * 27 7 6 29 29 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46890 * 299.99994 * 1 2 3 31 31 H 1.09000 * 109.47612 * 59.99441 * 1 2 3 32 32 H 1.09008 * 109.46798 * 240.00629 * 2 1 3 33 33 H 1.09001 * 109.47051 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47146 * 299.99974 * 3 2 1 35 35 H 1.08999 * 109.47234 * 60.00216 * 3 2 1 36 36 H 1.08002 * 119.96779 * 359.97438 * 5 4 2 37 37 H 1.07997 * 120.02771 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47933 * 59.99815 * 9 8 7 39 39 H 1.09008 * 109.47220 * 299.99692 * 9 8 7 40 40 H 0.96998 * 119.99643 * 359.97438 * 12 10 9 41 41 H 1.09009 * 109.46774 * 60.00205 * 13 12 10 42 42 H 1.09002 * 109.47338 * 300.00832 * 13 12 10 43 43 H 1.08997 * 109.47285 * 175.00337 * 16 14 13 44 44 H 1.09002 * 109.47155 * 295.00382 * 16 14 13 45 45 H 0.96700 * 113.99965 * 180.02562 * 17 16 14 46 46 H 0.97000 * 120.00040 * 334.99853 * 18 14 13 47 47 H 0.96999 * 119.99889 * 180.27497 * 22 21 19 48 48 H 1.08001 * 120.02612 * 179.72462 * 27 7 6 49 49 H 1.07998 * 119.96919 * 180.22986 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.8273 -1.8345 1.1021 6 6 3.2895 -2.4872 2.2284 7 6 2.9551 -2.0142 3.4890 8 8 3.4083 -2.6549 4.5987 9 6 3.0239 -2.1122 5.8634 10 6 3.6157 -2.9478 6.9692 11 8 4.2988 -3.9131 6.7007 12 7 3.3858 -2.6221 8.2568 13 6 3.9605 -3.4346 9.3317 14 6 3.5492 -2.8535 10.6859 15 1 2.4691 -2.9398 10.8053 16 6 4.2493 -3.6256 11.8061 17 8 5.6610 -3.6105 11.5848 18 7 3.9364 -1.4421 10.7497 19 6 3.2658 -0.5850 11.5809 20 1 2.4517 -0.9496 12.1898 21 6 3.6325 0.7524 11.6409 22 7 2.9844 1.5774 12.4358 23 14 5.0401 1.3833 10.5873 24 1 6.3143 1.2632 11.3403 25 1 5.1240 0.5803 9.3410 26 1 4.8009 2.8079 10.2430 27 6 2.1524 -0.8898 3.6151 28 6 1.6971 -0.2375 2.4856 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.0869 -2.2025 0.1205 37 1 3.9099 -3.3654 2.1277 38 1 1.9371 -2.1170 5.9458 39 1 3.3901 -1.0888 5.9461 40 1 2.8397 -1.8498 8.4716 41 1 5.0475 -3.4301 9.2491 42 1 3.5942 -4.4579 9.2494 43 1 4.0268 -3.1567 12.7646 44 1 3.8939 -4.6560 11.8144 45 1 6.1698 -4.0827 12.2580 46 1 4.6678 -1.1147 10.2032 47 1 3.2379 2.5128 12.4748 48 1 1.8871 -0.5222 4.5953 49 1 1.0752 0.6400 2.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571433871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:14 Heat of formation + Delta-G solvation = -93.952592 kcal Electronic energy + Delta-G solvation = -28393.895823 eV Core-core repulsion = 24321.482431 eV Total energy + Delta-G solvation = -4072.413392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56296 -39.47149 -38.12477 -37.22039 -35.12303 -34.94879 -33.65060 -31.68320 -31.26196 -29.96871 -29.03715 -27.91111 -27.44907 -25.07896 -23.55681 -23.36659 -22.57129 -20.40512 -20.29439 -20.08500 -18.49368 -18.08528 -17.03048 -16.93682 -16.43513 -16.25581 -15.70056 -15.57459 -14.97787 -14.63155 -14.57356 -14.38198 -14.17439 -13.80698 -13.67318 -13.55962 -13.44377 -13.20342 -13.09007 -12.89667 -12.67908 -12.55457 -12.49526 -12.27532 -11.68266 -11.54441 -11.46218 -11.07394 -11.07212 -10.97111 -10.91945 -10.84211 -10.77221 -10.18532 -9.75267 -9.70698 -9.50752 -9.19618 -9.06525 -8.83176 -8.24494 -7.41791 -5.89081 -3.25917 1.14770 1.22514 2.56915 2.68383 3.30407 3.36817 3.40887 3.54766 3.72941 4.39516 4.47170 4.49657 4.62327 4.71084 4.76812 4.85523 4.89068 4.91105 4.96723 5.12221 5.13451 5.15546 5.26610 5.29099 5.30791 5.39463 5.42911 5.51792 5.56097 5.65410 5.75383 5.82363 5.85719 5.87343 5.90850 5.92142 6.10345 6.14345 6.18676 6.32455 6.43765 6.54256 6.55166 6.67412 7.20691 7.67935 7.84186 8.06558 8.29728 8.33062 9.07444 9.79998 9.99888 11.28486 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.002398 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.160127 B =11672.809202 C =13213.761638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.119 4.119 5 C -0.079 4.079 6 C -0.147 4.147 7 C 0.128 3.872 8 O -0.289 6.289 9 C 0.040 3.960 10 C 0.513 3.487 11 O -0.528 6.528 12 N -0.713 5.713 13 C 0.117 3.883 14 C 0.171 3.829 15 H 0.076 0.924 16 C 0.059 3.941 17 O -0.565 6.565 18 N -0.739 5.739 19 C -0.252 4.252 20 H 0.091 0.909 21 C 0.010 3.990 22 N -0.930 5.930 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.277 1.277 26 H -0.292 1.292 27 C -0.207 4.207 28 C -0.073 4.073 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.410 0.590 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.031 0.969 45 H 0.367 0.633 46 H 0.366 0.634 47 H 0.261 0.739 48 H 0.130 0.870 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -6.010 -21.145 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.203 4.203 4 C -0.119 4.119 5 C -0.097 4.097 6 C -0.166 4.166 7 C 0.082 3.918 8 O -0.202 6.202 9 C -0.039 4.039 10 C 0.297 3.703 11 O -0.404 6.404 12 N -0.366 5.366 13 C -0.007 4.007 14 C 0.061 3.939 15 H 0.093 0.907 16 C -0.022 4.022 17 O -0.369 6.369 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.109 0.891 21 C -0.186 4.186 22 N -0.577 5.577 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.204 1.204 26 H -0.218 1.218 27 C -0.226 4.226 28 C -0.091 4.091 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.246 0.754 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.212 0.788 46 H 0.199 0.801 47 H 0.071 0.929 48 H 0.148 0.852 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.747 -6.403 -21.668 22.903 hybrid contribution 0.791 0.858 0.315 1.208 sum -2.957 -5.546 -21.353 22.259 Atomic orbital electron populations 1.21871 0.94479 1.01995 1.01867 1.20047 0.95811 0.95918 0.95230 1.21875 1.01299 0.95215 1.01873 1.19756 1.00434 0.97057 0.94663 1.20844 0.96435 0.94582 0.97817 1.20424 1.04301 1.02537 0.89336 1.19091 0.93934 0.91810 0.86919 1.86151 1.70240 1.52018 1.11752 1.22514 1.00936 0.98166 0.82268 1.19909 0.81456 0.85387 0.83542 1.90721 1.38258 1.28087 1.83375 1.45857 1.53543 1.32617 1.04631 1.21638 0.99569 0.93722 0.85727 1.20579 0.97442 0.85391 0.90499 0.90660 1.22990 0.81247 0.97399 1.00559 1.86516 1.18439 1.79127 1.52833 1.42739 1.40395 1.03740 1.51344 1.19041 1.12545 0.89411 1.17115 0.89125 1.24652 0.98775 0.96100 0.99091 1.69701 1.42783 1.04323 1.40876 0.86567 0.83348 0.77946 0.80653 1.20993 1.20363 1.21808 1.21314 1.03216 0.97931 1.00133 1.20755 0.98240 0.98824 0.91301 0.92534 0.92456 0.92500 0.90621 0.92513 0.92500 0.92436 0.85507 0.85071 0.88876 0.88826 0.75362 0.90439 0.91455 0.92697 0.95041 0.78787 0.80060 0.92929 0.85219 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.01 37.16 0.33 -0.60 16 2 C -0.05 -0.37 3.09 -91.77 -0.28 -0.65 16 3 C -0.15 -0.98 9.01 37.16 0.33 -0.64 16 4 C -0.12 -1.09 4.78 -104.60 -0.50 -1.59 16 5 C -0.08 -0.74 9.66 -39.61 -0.38 -1.13 16 6 C -0.15 -1.67 9.99 -39.44 -0.39 -2.07 16 7 C 0.13 1.62 6.69 -39.22 -0.26 1.36 16 8 O -0.29 -4.25 9.67 -39.36 -0.38 -4.63 16 9 C 0.04 0.51 5.22 36.01 0.19 0.70 16 10 C 0.51 8.23 7.91 -10.98 -0.09 8.15 16 11 O -0.53 -10.48 16.50 -14.35 -0.24 -10.71 16 12 N -0.71 -11.02 5.39 -60.30 -0.32 -11.34 16 13 C 0.12 1.91 5.12 -4.05 -0.02 1.89 16 14 C 0.17 2.99 2.84 -67.93 -0.19 2.80 16 15 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 16 C 0.06 0.95 6.86 37.16 0.25 1.20 16 17 O -0.57 -9.23 12.64 -35.23 -0.45 -9.68 16 18 N -0.74 -16.03 4.31 -53.43 -0.23 -16.26 16 19 C -0.25 -6.52 10.41 -15.06 -0.16 -6.67 16 20 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 21 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 22 N -0.93 -27.84 13.97 55.49 0.78 -27.07 16 23 Si 0.88 21.51 27.74 -169.99 -4.72 16.79 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.35 6.51 56.52 0.37 -5.99 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C -0.21 -2.27 9.04 -39.43 -0.36 -2.63 16 28 C -0.07 -0.71 8.70 -39.61 -0.34 -1.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 7.38 -51.93 -0.38 -0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.48 7.87 -51.92 -0.41 0.07 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 36 H 0.13 0.90 7.94 -52.49 -0.42 0.48 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.09 0.94 7.65 -51.93 -0.40 0.54 16 39 H 0.09 1.06 7.67 -51.92 -0.40 0.66 16 40 H 0.41 6.04 8.14 -40.82 -0.33 5.71 16 41 H 0.08 1.42 7.40 -51.92 -0.38 1.04 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.37 4.24 9.12 45.56 0.42 4.65 16 46 H 0.37 8.27 5.65 -40.82 -0.23 8.04 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 49 H 0.12 1.00 7.09 -52.49 -0.37 0.62 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -33.91 403.87 -8.45 -42.37 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -7.02 Total: 15.18 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.97 Total: -0.74 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.22 Total: -54.66 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.06 Total: -25.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.72 Total: 16.79 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.91 -8.45 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571433871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.586 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds