Wall clock time and date at job start Sat Apr 11 2020 04:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.46848 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00732 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47149 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47256 * 295.00176 * 14 13 12 16 16 C 1.52998 * 109.47219 * 174.99578 * 14 13 12 17 17 O 1.42905 * 109.47439 * 305.00388 * 16 14 13 18 18 N 1.46503 * 109.46972 * 55.00009 * 14 13 12 19 19 C 1.36935 * 119.99961 * 205.00225 * 18 14 13 20 20 H 1.08005 * 119.99654 * 359.97438 * 19 18 14 21 21 C 1.38812 * 120.00134 * 179.97438 * 19 18 14 22 22 N 1.31616 * 120.00300 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47105 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47312 * 120.00258 * 23 21 19 26 26 H 1.48503 * 109.47301 * 240.00202 * 23 21 19 27 27 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 28 28 C 1.38139 * 119.94262 * 359.97438 * 27 7 6 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 38 38 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 39 39 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 40 40 H 0.97006 * 119.99495 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.46957 * 299.99630 * 13 12 10 42 42 H 1.08997 * 109.47609 * 59.99426 * 13 12 10 43 43 H 1.09003 * 109.47051 * 64.99983 * 16 14 13 44 44 H 1.08996 * 109.47327 * 184.99912 * 16 14 13 45 45 H 0.96692 * 113.99861 * 180.02562 * 17 16 14 46 46 H 0.96995 * 120.00302 * 24.99799 * 18 14 13 47 47 H 0.96992 * 120.00184 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.02456 * 179.97438 * 27 7 6 49 49 H 1.07998 * 119.97261 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6122 -2.9495 -6.9696 11 8 4.2937 -3.9161 -6.7012 12 7 3.3823 -2.6237 -8.2571 13 6 3.9551 -3.4375 -9.3321 14 6 3.5442 -2.8560 -10.6863 15 1 2.4639 -2.9401 -10.8052 16 6 4.2424 -3.6295 -11.8066 17 8 5.6543 -3.6170 -11.5858 18 7 3.9341 -1.4452 -10.7505 19 6 3.2648 -0.5870 -11.5816 20 1 2.4497 -0.9503 -12.1900 21 6 3.6338 0.7498 -11.6420 22 7 4.6274 1.1924 -10.9009 23 14 2.7212 1.9203 -12.7762 24 1 1.6542 1.1802 -13.4968 25 1 2.1113 3.0115 -11.9747 26 1 3.6722 2.4998 -13.7586 27 6 3.2885 -2.4877 -2.2287 28 6 2.8276 -1.8341 -1.1023 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.0679 0.6351 -2.5831 37 1 1.8946 -0.5164 -4.5955 38 1 1.9356 -2.1162 -5.9460 39 1 3.3897 -1.0896 -5.9464 40 1 2.8369 -1.8508 -8.4718 41 1 5.0420 -3.4350 -9.2499 42 1 3.5869 -4.4601 -9.2494 43 1 3.8851 -4.6592 -11.8146 44 1 4.0204 -3.1604 -12.7651 45 1 6.1618 -4.0897 -12.2596 46 1 4.6662 -1.1191 -10.2043 47 1 4.8855 2.1264 -10.9434 48 1 3.9087 -3.3660 -2.1281 49 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571433872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:20 Heat of formation + Delta-G solvation = -97.562668 kcal Electronic energy + Delta-G solvation = -28276.222875 eV Core-core repulsion = 24203.652939 eV Total energy + Delta-G solvation = -4072.569936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.47679 -39.34842 -38.02836 -37.06603 -35.01335 -34.84876 -33.54051 -31.54273 -31.18383 -29.78690 -28.64515 -27.68484 -27.40951 -24.96952 -23.67533 -23.48953 -22.51190 -20.28772 -20.22840 -19.96770 -18.40727 -17.72906 -16.96801 -16.64650 -16.32169 -16.15834 -15.63003 -15.51372 -14.85528 -14.56436 -14.49769 -14.32026 -14.02366 -13.77731 -13.55723 -13.49752 -13.42930 -13.17495 -12.98313 -12.89151 -12.61144 -12.46994 -12.32562 -11.97399 -11.53282 -11.44684 -11.39674 -11.02292 -10.95212 -10.90452 -10.88621 -10.78488 -10.60936 -10.12124 -9.84845 -9.61087 -9.39162 -9.13158 -9.03827 -8.67567 -8.17318 -7.09397 -5.86749 -3.17471 1.21309 1.29135 2.67966 2.82265 3.34897 3.40821 3.43489 3.61283 3.85347 4.44477 4.47747 4.52959 4.70589 4.79966 4.89402 4.93351 4.93768 5.01332 5.10453 5.17105 5.19921 5.33261 5.34545 5.36432 5.46469 5.49111 5.52434 5.55652 5.60998 5.69544 5.85232 5.88382 5.95121 5.96680 5.97982 6.00624 6.16977 6.25352 6.30524 6.46529 6.49542 6.62385 6.69314 6.81668 7.29181 7.58033 7.83151 8.17637 8.30110 8.47399 9.42550 9.97336 10.33902 11.34744 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.002305 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.144052 B =12142.285818 C =14073.567219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.120 4.120 5 C -0.073 4.073 6 C -0.207 4.207 7 C 0.129 3.871 8 O -0.289 6.289 9 C 0.041 3.959 10 C 0.514 3.486 11 O -0.531 6.531 12 N -0.708 5.708 13 C 0.121 3.879 14 C 0.165 3.835 15 H 0.067 0.933 16 C 0.060 3.940 17 O -0.560 6.560 18 N -0.714 5.714 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.008 4.008 22 N -0.925 5.925 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 C -0.148 4.148 28 C -0.079 4.079 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.410 0.590 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.049 0.951 45 H 0.364 0.636 46 H 0.389 0.611 47 H 0.256 0.744 48 H 0.131 0.869 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 -4.918 17.676 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.203 4.203 4 C -0.120 4.120 5 C -0.091 4.091 6 C -0.226 4.226 7 C 0.084 3.916 8 O -0.202 6.202 9 C -0.038 4.038 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.362 5.362 13 C -0.003 4.003 14 C 0.054 3.946 15 H 0.084 0.916 16 C -0.022 4.022 17 O -0.364 6.364 18 N -0.355 5.355 19 C -0.379 4.379 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.167 4.167 28 C -0.097 4.097 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.247 0.753 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.209 0.791 46 H 0.223 0.777 47 H 0.066 0.934 48 H 0.149 0.851 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.269 -5.331 18.253 20.358 hybrid contribution -0.409 1.096 -1.460 1.871 sum -7.678 -4.236 16.793 18.944 Atomic orbital electron populations 1.21870 0.94540 1.01962 1.01826 1.20041 0.95760 0.95923 0.95255 1.21873 1.01334 0.95214 1.01834 1.19745 1.00514 0.97128 0.94635 1.20748 0.98220 0.98852 0.91309 1.21317 1.03225 0.97881 1.00135 1.19095 0.93856 0.91716 0.86964 1.86151 1.70271 1.51939 1.11800 1.22513 1.00759 0.98345 0.82167 1.19881 0.81436 0.85355 0.83576 1.90715 1.38471 1.28195 1.83420 1.45814 1.53439 1.32400 1.04508 1.21578 0.99662 0.93268 0.85824 1.20604 0.96782 0.86684 0.90508 0.91562 1.23025 0.81532 0.97110 1.00528 1.86568 1.18285 1.79012 1.52507 1.42392 1.40467 1.01840 1.50845 1.19257 1.11658 0.89626 1.17385 0.91114 1.24755 0.98529 0.97222 0.99973 1.69683 1.29827 1.15023 1.42699 0.86157 0.78803 0.81187 0.80184 1.20592 1.21839 1.21867 1.20425 1.04298 1.02576 0.89355 1.20832 0.96499 0.94578 0.97793 0.92462 0.92557 0.92549 0.90650 0.92440 0.92544 0.92483 0.85890 0.85188 0.89110 0.88620 0.75320 0.90406 0.91940 0.95480 0.93270 0.79094 0.77664 0.93434 0.85088 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.00 37.16 0.33 -0.64 16 2 C -0.05 -0.38 3.09 -91.77 -0.28 -0.67 16 3 C -0.15 -1.02 9.01 37.16 0.33 -0.69 16 4 C -0.12 -1.15 4.78 -104.60 -0.50 -1.65 16 5 C -0.07 -0.74 8.70 -39.60 -0.34 -1.09 16 6 C -0.21 -2.38 9.04 -39.44 -0.36 -2.73 16 7 C 0.13 1.71 6.69 -39.22 -0.26 1.45 16 8 O -0.29 -4.45 9.67 -39.35 -0.38 -4.83 16 9 C 0.04 0.55 5.22 36.00 0.19 0.74 16 10 C 0.51 8.71 7.91 -10.98 -0.09 8.63 16 11 O -0.53 -11.04 16.50 -14.35 -0.24 -11.28 16 12 N -0.71 -11.65 5.39 -60.30 -0.32 -11.97 16 13 C 0.12 2.10 5.12 -4.04 -0.02 2.08 16 14 C 0.17 3.04 2.84 -67.93 -0.19 2.84 16 15 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 16 C 0.06 1.00 6.86 37.16 0.25 1.26 16 17 O -0.56 -9.87 12.64 -35.23 -0.45 -10.32 16 18 N -0.71 -16.48 4.51 -53.42 -0.24 -16.72 16 19 C -0.25 -6.34 9.93 -15.06 -0.15 -6.49 16 20 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 23 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.15 -1.75 9.99 -39.43 -0.39 -2.14 16 28 C -0.08 -0.78 9.66 -39.61 -0.38 -1.16 16 29 H 0.06 0.39 7.37 -51.93 -0.38 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 33 H 0.06 0.41 7.40 -51.93 -0.38 0.03 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.12 1.04 7.09 -52.49 -0.37 0.67 16 37 H 0.13 1.32 6.30 -52.48 -0.33 0.99 16 38 H 0.09 0.98 7.66 -51.93 -0.40 0.58 16 39 H 0.10 1.18 7.66 -51.93 -0.40 0.78 16 40 H 0.41 6.52 8.14 -40.82 -0.33 6.19 16 41 H 0.08 1.55 7.40 -51.93 -0.38 1.16 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.36 4.61 9.12 45.56 0.42 5.03 16 46 H 0.39 10.03 7.80 -40.82 -0.32 9.71 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 49 H 0.13 0.95 7.94 -52.49 -0.42 0.53 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -33.03 406.99 -8.81 -41.84 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -7.06 Total: 17.46 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.96 Total: -0.56 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.16 Total: -54.67 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.06 Total: -26.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.03 -8.81 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571433872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.720 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds