Wall clock time and date at job start Sat Apr 11 2020 04:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47133 * 2 1 4 4 O 1.33917 * 125.60521 * 269.95838 * 3 2 1 5 5 C 1.34934 * 109.37918 * 180.02562 * 4 3 2 6 6 C 1.46472 * 125.99629 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99768 * 179.97438 * 6 5 4 8 8 O 1.34902 * 119.99862 * 359.97438 * 6 5 4 9 9 C 1.36647 * 108.00855 * 359.72793 * 5 4 3 10 10 C 1.35163 * 125.61277 * 89.99779 * 3 2 1 11 11 C 1.50705 * 126.43654 * 359.96333 * 10 3 2 12 12 N 1.46898 * 109.46997 * 80.00082 * 11 10 3 13 13 C 1.46896 * 111.00139 * 170.00340 * 12 11 10 14 14 C 1.53237 * 109.36443 * 172.76076 * 13 12 11 15 15 H 1.09001 * 109.62767 * 294.10297 * 14 13 12 16 16 C 1.53001 * 109.62784 * 173.52416 * 14 13 12 17 17 N 1.47080 * 108.52065 * 53.81339 * 14 13 12 18 18 C 1.36942 * 120.87877 * 128.79541 * 17 14 13 19 19 H 1.07994 * 120.00117 * 333.43482 * 18 17 14 20 20 C 1.38817 * 119.99756 * 153.43542 * 18 17 14 21 21 N 1.31617 * 119.99771 * 342.97318 * 20 18 17 22 22 Si 1.86798 * 119.99957 * 162.98090 * 20 18 17 23 23 H 1.48497 * 109.46918 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47181 * 119.99579 * 22 20 18 25 25 H 1.48503 * 109.47134 * 239.99853 * 22 20 18 26 26 C 1.47074 * 118.23796 * 308.81494 * 17 14 13 27 27 H 1.09001 * 109.62875 * 170.89661 * 26 17 14 28 28 C 1.52995 * 109.63047 * 291.27975 * 26 17 14 29 29 C 1.46896 * 111.02417 * 45.67989 * 12 11 10 30 30 H 1.09002 * 109.47107 * 300.00204 * 1 2 3 31 31 H 1.09000 * 109.46734 * 60.00495 * 1 2 3 32 32 H 1.08999 * 109.47306 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47134 * 239.99119 * 2 1 3 34 34 H 1.09000 * 109.46734 * 119.99505 * 2 1 3 35 35 H 0.96697 * 117.00101 * 179.97438 * 8 6 5 36 36 H 1.07991 * 126.64747 * 180.26658 * 9 5 4 37 37 H 1.09002 * 109.47213 * 320.00048 * 11 10 3 38 38 H 1.08997 * 109.47318 * 200.00152 * 11 10 3 39 39 H 1.08995 * 109.49455 * 52.78054 * 13 12 11 40 40 H 1.09006 * 109.49157 * 292.73120 * 13 12 11 41 41 H 1.08998 * 109.47214 * 60.00228 * 16 14 13 42 42 H 1.09002 * 109.46680 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47379 * 299.99531 * 16 14 13 44 44 H 0.97008 * 120.00248 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47124 * 60.00287 * 28 26 17 46 46 H 1.08997 * 109.47563 * 179.97438 * 28 26 17 47 47 H 1.08996 * 109.47693 * 300.00431 * 28 26 17 48 48 H 1.09007 * 109.46854 * 67.26399 * 29 12 11 49 49 H 1.09001 * 109.51466 * 307.22132 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2930 2.1556 -1.0888 5 6 2.7252 3.3770 -0.7118 6 6 3.1124 4.4680 -1.6090 7 8 3.4873 5.5296 -1.1490 8 8 3.0530 4.2954 -2.9456 9 6 2.7329 3.4194 0.6540 10 6 2.2947 2.1629 1.0988 11 6 2.1391 1.7252 2.5325 12 7 3.2979 0.9121 2.9248 13 6 3.3020 0.6654 4.3729 14 6 4.4160 -0.3294 4.7157 15 1 4.1896 -1.2994 4.2730 16 6 4.5318 -0.4678 6.2350 17 7 5.6823 0.1802 4.1680 18 6 6.7983 0.2816 4.9552 19 1 6.6963 0.4101 6.0226 20 6 8.0606 0.2194 4.3810 21 7 8.2075 -0.2629 3.1652 22 14 9.5507 0.8199 5.3340 23 1 9.1202 1.3120 6.6673 24 1 10.5124 -0.2986 5.5055 25 1 10.2042 1.9244 4.5866 26 6 5.7182 0.5784 2.7526 27 1 6.6616 1.0799 2.5371 28 6 5.5810 -0.6612 1.8663 29 6 4.5530 1.5375 2.4871 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.3182 5.0440 -3.4972 36 1 3.0230 4.2566 1.2713 37 1 1.2290 1.1342 2.6353 38 1 2.0768 2.6030 3.1757 39 1 2.3396 0.2519 4.6742 40 1 3.4764 1.6029 4.9010 41 1 3.5866 -0.8293 6.6400 42 1 5.3245 -1.1763 6.4758 43 1 4.7667 0.5029 6.6715 44 1 9.0896 -0.3060 2.7638 45 1 4.6337 -1.1568 2.0789 46 1 5.6074 -0.3632 0.8182 47 1 6.4035 -1.3466 2.0704 48 1 4.7102 2.4630 3.0411 49 1 4.4980 1.7568 1.4208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597763333.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:24 Heat of formation + Delta-G solvation = -45.033407 kcal Electronic energy + Delta-G solvation = -30972.594867 eV Core-core repulsion = 26902.302771 eV Total energy + Delta-G solvation = -4070.292097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.90861 -40.06543 -38.57182 -36.36857 -35.55032 -34.02362 -33.03747 -32.38073 -31.17528 -29.58698 -27.88117 -26.47406 -25.93289 -25.11298 -24.03296 -22.59797 -21.93525 -21.31493 -20.83165 -19.74565 -18.52261 -18.02421 -17.53651 -16.75172 -16.20878 -15.76209 -15.46097 -15.20990 -14.73465 -14.49900 -14.41683 -14.03202 -13.78633 -13.74801 -13.31811 -13.21572 -13.15632 -12.83614 -12.55615 -12.29085 -11.98572 -11.84299 -11.81086 -11.55732 -11.47789 -11.19093 -11.14998 -11.07451 -10.94662 -10.87062 -10.63632 -10.48106 -10.42084 -9.98743 -9.91357 -9.79265 -9.39585 -9.17916 -8.57578 -8.42381 -7.74884 -6.58647 -5.72057 -3.12837 0.74135 2.12206 2.29564 2.77146 3.08537 3.39364 3.48068 3.48902 4.47412 4.51237 4.54511 4.66324 4.90625 5.01636 5.10852 5.28494 5.29778 5.33924 5.43687 5.45997 5.68116 5.72386 5.75872 5.79847 5.85065 5.89291 5.98507 6.07559 6.13093 6.14165 6.17061 6.28357 6.29562 6.34031 6.40133 6.46130 6.67723 6.85744 6.87965 6.98230 7.05878 7.13446 7.27185 7.54034 7.59974 7.62504 7.78118 7.89058 8.00314 8.50405 9.28981 9.91713 10.49327 11.35296 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.003785 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.323894 B = 7395.507357 C = 8641.972652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.065 3.935 4 O -0.151 6.151 5 C -0.084 4.084 6 C 0.575 3.425 7 O -0.498 6.498 8 O -0.506 6.506 9 C -0.084 4.084 10 C -0.181 4.181 11 C 0.121 3.879 12 N -0.524 5.524 13 C 0.049 3.951 14 C 0.173 3.827 15 H 0.033 0.967 16 C -0.138 4.138 17 N -0.585 5.585 18 C -0.247 4.247 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.898 5.898 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.198 3.802 27 H 0.093 0.907 28 C -0.132 4.132 29 C 0.043 3.957 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.417 0.583 36 H 0.161 0.839 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.251 0.749 45 H 0.032 0.968 46 H 0.017 0.983 47 H 0.072 0.928 48 H 0.021 0.979 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.028 3.312 -7.735 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C 0.011 3.989 4 O -0.046 6.046 5 C -0.133 4.133 6 C 0.419 3.581 7 O -0.388 6.388 8 O -0.318 6.318 9 C -0.104 4.104 10 C -0.182 4.182 11 C -0.006 4.006 12 N -0.249 5.249 13 C -0.081 4.081 14 C 0.066 3.934 15 H 0.051 0.949 16 C -0.196 4.196 17 N -0.308 5.308 18 C -0.377 4.377 19 H 0.088 0.912 20 C -0.196 4.196 21 N -0.543 5.543 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.092 3.908 27 H 0.110 0.890 28 C -0.191 4.191 29 C -0.086 4.086 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.276 0.724 36 H 0.178 0.822 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.036 0.964 47 H 0.091 0.909 48 H 0.039 0.961 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.946 2.719 -7.967 18.032 hybrid contribution 1.240 1.827 0.464 2.256 sum -14.706 4.546 -7.503 17.124 Atomic orbital electron populations 1.21764 0.93734 1.02590 1.02382 1.20330 0.96175 0.86627 1.05719 1.22812 0.98449 0.94506 0.83162 1.84078 1.64456 1.21503 1.34586 1.20321 1.15083 0.85651 0.92282 1.18849 0.73977 0.84673 0.80575 1.91007 1.44441 1.26010 1.77358 1.84675 1.80972 1.48002 1.18141 1.21897 0.97659 0.98703 0.92146 1.20048 1.07857 0.93599 0.96714 1.20492 0.95481 0.95948 0.88688 1.62107 1.01909 1.45938 1.14902 1.22685 0.99440 0.99287 0.86663 1.20439 0.86620 0.93966 0.92398 0.94928 1.21802 0.99926 1.01792 0.96036 1.44294 1.06102 1.73195 1.07241 1.19229 0.83799 1.43152 0.91503 0.91190 1.24979 0.97437 1.00174 0.97057 1.70021 1.21756 1.47280 1.15228 0.86321 0.83444 0.78229 0.79361 1.20472 1.21893 1.21792 1.20384 0.94481 0.92469 0.83506 0.88967 1.21925 1.00655 1.00379 0.96148 1.22863 0.90477 0.96769 0.98464 0.92092 0.92539 0.91287 0.89721 0.86727 0.72447 0.82175 0.90210 0.94348 0.92144 0.95362 0.94270 0.91874 0.92975 0.93916 0.94882 0.96356 0.90907 0.96082 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 37.16 0.37 -0.83 16 2 C -0.05 -0.53 6.25 -27.88 -0.17 -0.71 16 3 C 0.06 0.84 6.57 -35.40 -0.23 0.61 16 4 O -0.15 -2.12 10.67 4.74 0.05 -2.07 16 5 C -0.08 -1.19 7.18 -36.84 -0.26 -1.45 16 6 C 0.57 7.60 8.30 34.05 0.28 7.88 16 7 O -0.50 -7.59 17.65 -19.36 -0.34 -7.93 16 8 O -0.51 -5.12 13.44 -42.49 -0.57 -5.69 16 9 C -0.08 -1.18 9.80 -39.38 -0.39 -1.57 16 10 C -0.18 -2.47 3.79 -104.94 -0.40 -2.87 16 11 C 0.12 1.64 5.27 -4.97 -0.03 1.62 16 12 N -0.52 -8.70 4.28 -235.77 -1.01 -9.70 16 13 C 0.05 0.83 4.87 -3.70 -0.02 0.81 16 14 C 0.17 3.46 3.26 -67.49 -0.22 3.24 16 15 H 0.03 0.70 7.63 -51.93 -0.40 0.30 16 16 C -0.14 -2.50 7.93 37.16 0.29 -2.20 16 17 N -0.59 -13.99 2.73 -157.01 -0.43 -14.42 16 18 C -0.25 -6.51 8.73 -15.06 -0.13 -6.64 16 19 H 0.07 1.81 6.16 -52.49 -0.32 1.49 16 20 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 21 N -0.90 -25.18 9.76 55.49 0.54 -24.64 16 22 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C 0.20 4.60 2.34 -67.50 -0.16 4.44 16 27 H 0.09 2.48 6.12 -51.93 -0.32 2.17 16 28 C -0.13 -2.96 8.97 37.15 0.33 -2.63 16 29 C 0.04 0.84 4.54 -3.71 -0.02 0.83 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.29 7.86 -51.93 -0.41 0.88 16 35 H 0.42 1.97 9.11 45.56 0.42 2.38 16 36 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.08 0.93 8.13 -51.93 -0.42 0.50 16 38 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.24 7.58 -51.93 -0.39 0.84 16 43 H 0.05 0.97 7.54 -51.93 -0.39 0.58 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.03 0.70 7.10 -51.93 -0.37 0.33 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 1.86 6.88 -51.93 -0.36 1.51 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.17 5.97 -51.93 -0.31 0.86 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -30.95 389.86 -8.80 -39.75 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.05 Total: 1.80 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.83 Total: 0.49 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.90 Total: -48.77 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.86 Total: -15.69 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.95 -8.80 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597763333.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.280 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds