Wall clock time and date at job start Sat Apr 11 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46475 * 2 1 4 4 O 1.33919 * 125.60960 * 276.07662 * 3 2 1 5 5 C 1.34931 * 109.38168 * 180.31165 * 4 3 2 6 6 C 1.46470 * 125.99511 * 179.75386 * 5 4 3 7 7 O 1.21625 * 119.99740 * 179.97438 * 6 5 4 8 8 O 1.34889 * 120.00250 * 359.96992 * 6 5 4 9 9 C 1.36646 * 108.00863 * 359.73084 * 5 4 3 10 10 C 1.35168 * 125.61227 * 95.92489 * 3 2 1 11 11 C 1.50702 * 126.43369 * 359.96709 * 10 3 2 12 12 N 1.46908 * 109.46776 * 280.75403 * 11 10 3 13 13 C 1.46899 * 110.99897 * 184.89741 * 12 11 10 14 14 C 1.53239 * 109.33548 * 187.25525 * 13 12 11 15 15 H 1.08996 * 109.63006 * 65.88294 * 14 13 12 16 16 C 1.53005 * 109.62764 * 186.46173 * 14 13 12 17 17 N 1.47080 * 108.52271 * 306.16864 * 14 13 12 18 18 C 1.36936 * 120.87927 * 231.16229 * 17 14 13 19 19 H 1.08000 * 119.99339 * 123.89194 * 18 17 14 20 20 C 1.38813 * 120.00457 * 303.88760 * 18 17 14 21 21 N 1.31617 * 119.99790 * 339.47454 * 20 18 17 22 22 Si 1.86802 * 119.99956 * 159.47203 * 20 18 17 23 23 H 1.48492 * 109.47267 * 90.00048 * 22 20 18 24 24 H 1.48497 * 109.46879 * 210.00429 * 22 20 18 25 25 H 1.48502 * 109.46797 * 330.00295 * 22 20 18 26 26 C 1.47075 * 118.23714 * 51.18990 * 17 14 13 27 27 H 1.09010 * 109.63061 * 68.71442 * 26 17 14 28 28 C 1.52997 * 109.63032 * 189.10312 * 26 17 14 29 29 C 1.46897 * 110.99880 * 309.20383 * 12 11 10 30 30 H 1.09005 * 109.46575 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47005 * 299.99769 * 1 2 3 32 32 H 1.09002 * 109.46996 * 60.00798 * 1 2 3 33 33 H 1.08994 * 109.47336 * 239.99798 * 2 1 3 34 34 H 1.09002 * 109.46699 * 119.99662 * 2 1 3 35 35 H 0.96697 * 116.99949 * 179.97438 * 8 6 5 36 36 H 1.07999 * 126.64769 * 180.02562 * 9 5 4 37 37 H 1.08992 * 109.46978 * 160.76106 * 11 10 3 38 38 H 1.08993 * 109.47460 * 40.75133 * 11 10 3 39 39 H 1.09003 * 109.49134 * 67.29979 * 13 12 11 40 40 H 1.08999 * 109.51490 * 307.23038 * 13 12 11 41 41 H 1.08992 * 109.47295 * 186.66234 * 16 14 13 42 42 H 1.09000 * 109.46721 * 306.66235 * 16 14 13 43 43 H 1.09002 * 109.47079 * 66.65792 * 16 14 13 44 44 H 0.97002 * 119.99838 * 185.05001 * 21 20 18 45 45 H 1.08997 * 109.47214 * 59.99780 * 28 26 17 46 46 H 1.09000 * 109.47190 * 299.99644 * 28 26 17 47 47 H 1.08999 * 109.47241 * 179.97438 * 28 26 17 48 48 H 1.08996 * 109.50066 * 52.78589 * 29 12 11 49 49 H 1.08998 * 109.49150 * 292.70260 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.1834 2.1945 -1.0827 5 6 2.6593 3.4004 -0.7084 6 6 2.9624 4.5211 -1.6014 7 8 3.3885 5.5646 -1.1446 8 8 2.7690 4.3959 -2.9305 9 6 2.8082 3.3928 0.6499 10 6 2.4015 2.1252 1.0930 11 6 2.3856 1.6381 2.5191 12 7 1.0146 1.7024 3.0431 13 6 0.9783 1.3451 4.4675 14 6 -0.4797 1.2477 4.9291 15 1 -0.9686 0.4144 4.4245 16 6 -0.5262 1.0351 6.4436 17 7 -1.1636 2.5036 4.5854 18 6 -1.8811 3.1934 5.5259 19 1 -1.6460 4.2269 5.7333 20 6 -2.9105 2.5643 6.2125 21 7 -3.4684 1.4813 5.7144 22 14 -3.5039 3.2549 7.8436 23 1 -4.5965 4.2306 7.5999 24 1 -4.0093 2.1483 8.6951 25 1 -2.3776 3.9348 8.5324 26 6 -1.0568 2.9986 3.2046 27 1 -1.6042 2.3355 2.5344 28 6 -1.6389 4.4109 3.1184 29 6 0.4239 3.0271 2.8107 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.9829 5.1627 -3.4794 36 1 3.1688 4.2052 1.2634 37 1 3.0362 2.2681 3.1254 38 1 2.7403 0.6082 2.5552 39 1 1.4931 2.1108 5.0479 40 1 1.4714 0.3843 4.6146 41 1 -1.5544 0.8482 6.7529 42 1 0.0945 0.1794 6.7096 43 1 -0.1514 1.9262 6.9473 44 1 -4.2351 1.0838 6.1559 45 1 -1.0854 5.0732 3.7841 46 1 -2.6874 4.3906 3.4155 47 1 -1.5581 4.7754 2.0944 48 1 0.5147 3.2860 1.7558 49 1 0.9465 3.7694 3.4141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597763337.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:29 Heat of formation + Delta-G solvation = -48.588686 kcal Electronic energy + Delta-G solvation = -30929.426591 eV Core-core repulsion = 26858.980326 eV Total energy + Delta-G solvation = -4070.446265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.94068 -40.11548 -38.48488 -36.41845 -35.56176 -33.94469 -33.04590 -32.66414 -31.24985 -29.58983 -27.70711 -26.58749 -25.80805 -25.05392 -24.38956 -22.50223 -21.73462 -21.28593 -20.33998 -19.75600 -19.02566 -18.07853 -17.59185 -16.78203 -16.21572 -15.72585 -15.42702 -15.13518 -14.79301 -14.61597 -14.37338 -14.19562 -13.95516 -13.68722 -13.42165 -13.25127 -13.04200 -12.83061 -12.38817 -12.23753 -11.91287 -11.88648 -11.80712 -11.54205 -11.38673 -11.30861 -11.17389 -11.04065 -10.94416 -10.85437 -10.60594 -10.46204 -10.37566 -10.12915 -9.94318 -9.76822 -9.71114 -9.40645 -8.60718 -8.19413 -7.79851 -6.23520 -5.69246 -3.50794 0.69470 2.08702 2.25233 2.72172 3.04451 3.31488 3.40346 3.43907 4.42471 4.48472 4.50187 4.63019 4.90002 5.07429 5.23821 5.26396 5.27720 5.35147 5.37371 5.49990 5.62972 5.76859 5.79841 5.91944 5.93253 5.97358 6.05157 6.09315 6.13606 6.22247 6.25329 6.29869 6.36584 6.46209 6.50321 6.54381 6.64627 6.71683 6.80664 6.82889 6.95967 7.22395 7.26126 7.51554 7.55133 7.57553 7.67063 7.74957 7.91785 8.69619 9.27216 9.78118 10.60602 11.20755 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.003283 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.481881 B = 8526.609934 C = 9149.734938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C 0.065 3.935 4 O -0.150 6.150 5 C -0.086 4.086 6 C 0.575 3.425 7 O -0.499 6.499 8 O -0.506 6.506 9 C -0.084 4.084 10 C -0.182 4.182 11 C 0.122 3.878 12 N -0.525 5.525 13 C 0.043 3.957 14 C 0.199 3.801 15 H 0.035 0.965 16 C -0.137 4.137 17 N -0.577 5.577 18 C -0.268 4.268 19 H 0.047 0.953 20 C 0.043 3.957 21 N -0.873 5.873 22 Si 0.879 3.121 23 H -0.284 1.284 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.175 3.825 27 H 0.029 0.971 28 C -0.129 4.129 29 C 0.050 3.950 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.417 0.583 36 H 0.161 0.839 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.048 0.952 44 H 0.255 0.745 45 H 0.047 0.953 46 H 0.065 0.935 47 H 0.032 0.968 48 H 0.059 0.941 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.285 -1.723 -12.744 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C 0.011 3.989 4 O -0.046 6.046 5 C -0.135 4.135 6 C 0.419 3.581 7 O -0.389 6.389 8 O -0.318 6.318 9 C -0.104 4.104 10 C -0.183 4.183 11 C -0.006 4.006 12 N -0.250 5.250 13 C -0.086 4.086 14 C 0.092 3.908 15 H 0.053 0.947 16 C -0.195 4.195 17 N -0.302 5.302 18 C -0.398 4.398 19 H 0.065 0.935 20 C -0.160 4.160 21 N -0.512 5.512 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.214 1.214 25 H -0.200 1.200 26 C 0.069 3.931 27 H 0.047 0.953 28 C -0.187 4.187 29 C -0.079 4.079 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.276 0.724 36 H 0.178 0.822 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.845 -2.349 -12.839 17.626 hybrid contribution 0.303 1.585 1.021 1.910 sum 12.148 -0.764 -11.818 16.966 Atomic orbital electron populations 1.21792 0.92628 1.02732 1.03732 1.20238 0.97624 0.85994 1.03984 1.22890 0.98103 0.94563 0.83369 1.84079 1.64401 1.21104 1.35034 1.20321 1.14405 0.86153 0.92618 1.18848 0.74025 0.84707 0.80484 1.91007 1.43163 1.27653 1.77055 1.84674 1.80695 1.47542 1.18878 1.21895 0.98234 0.98112 0.92132 1.20078 1.07627 0.93925 0.96716 1.20461 0.91490 1.00220 0.88384 1.62056 1.15994 1.29358 1.17545 1.22858 1.01012 0.98495 0.86221 1.20288 0.87080 0.89820 0.93570 0.94696 1.21853 1.02973 0.98452 0.96214 1.43979 1.57582 1.24406 1.04258 1.18527 1.11078 0.95879 1.14355 0.93518 1.25610 0.95159 0.96616 0.98610 1.70061 1.20713 1.22105 1.38332 0.86709 0.78930 0.78549 0.85062 1.21035 1.21366 1.19967 1.20513 0.90390 0.93787 0.88442 0.95318 1.21680 1.02338 0.96513 0.98187 1.22700 0.98071 0.88162 0.99008 0.91639 0.89859 0.92871 0.90330 0.88065 0.72430 0.82170 0.94348 0.90129 0.95492 0.92281 0.90182 0.95759 0.93308 0.93506 0.93434 0.91555 0.94920 0.92225 0.95730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 37.16 0.37 -1.37 16 2 C -0.04 -0.42 6.32 -27.88 -0.18 -0.60 16 3 C 0.06 0.81 6.57 -35.40 -0.23 0.58 16 4 O -0.15 -2.02 10.67 4.74 0.05 -1.97 16 5 C -0.09 -1.15 7.18 -36.84 -0.26 -1.41 16 6 C 0.57 7.14 8.30 34.05 0.28 7.42 16 7 O -0.50 -7.18 17.65 -19.36 -0.34 -7.52 16 8 O -0.51 -4.75 13.44 -42.45 -0.57 -5.32 16 9 C -0.08 -1.11 9.79 -39.38 -0.39 -1.50 16 10 C -0.18 -2.39 4.01 -104.94 -0.42 -2.81 16 11 C 0.12 1.64 5.26 -4.97 -0.03 1.61 16 12 N -0.53 -8.68 4.74 -235.76 -1.12 -9.80 16 13 C 0.04 0.78 4.90 -3.70 -0.02 0.76 16 14 C 0.20 4.36 3.24 -67.49 -0.22 4.14 16 15 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.14 -2.98 8.03 37.16 0.30 -2.68 16 17 N -0.58 -13.81 2.78 -157.00 -0.44 -14.24 16 18 C -0.27 -6.98 6.56 -15.06 -0.10 -7.08 16 19 H 0.05 1.26 7.31 -52.49 -0.38 0.88 16 20 C 0.04 1.14 3.30 -17.43 -0.06 1.08 16 21 N -0.87 -24.20 12.32 55.49 0.68 -23.51 16 22 Si 0.88 20.66 29.60 -169.99 -5.03 15.62 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.17 3.75 3.66 -67.49 -0.25 3.50 16 27 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 28 C -0.13 -2.62 8.21 37.16 0.31 -2.31 16 29 C 0.05 0.91 4.57 -3.70 -0.02 0.89 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.95 7.21 -51.93 -0.37 0.58 16 35 H 0.42 1.67 9.11 45.56 0.42 2.09 16 36 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.04 0.52 8.13 -51.93 -0.42 0.09 16 38 H 0.08 0.94 7.45 -51.93 -0.39 0.56 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 41 H 0.08 1.96 5.36 -51.93 -0.28 1.69 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 1.08 7.70 -51.93 -0.40 0.68 16 44 H 0.25 6.85 8.32 -40.82 -0.34 6.51 16 45 H 0.05 0.96 7.66 -51.93 -0.40 0.57 16 46 H 0.07 1.47 7.65 -51.93 -0.40 1.08 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 1.04 6.03 -51.93 -0.31 0.73 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -30.42 391.84 -8.91 -39.34 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.15 Total: 1.28 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.91 Total: 0.22 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.87 Total: -47.55 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.86 Total: -14.81 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.42 -8.91 -39.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597763337.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.250 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds