Wall clock time and date at job start Sat Apr 11 2020 04:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46864 * 2 1 4 4 O 1.33919 * 125.61205 * 269.95908 * 3 2 1 5 5 C 1.34933 * 109.37913 * 180.02562 * 4 3 2 6 6 C 1.46472 * 125.99053 * 179.97438 * 5 4 3 7 7 O 1.21619 * 119.99794 * 180.02562 * 6 5 4 8 8 O 1.34895 * 120.00180 * 0.02605 * 6 5 4 9 9 C 1.36635 * 108.01069 * 359.73426 * 5 4 3 10 10 C 1.35173 * 125.60889 * 90.00359 * 3 2 1 11 11 C 1.50700 * 126.43734 * 359.96185 * 10 3 2 12 12 N 1.46902 * 109.46995 * 79.99937 * 11 10 3 13 13 C 1.46895 * 110.99943 * 190.00152 * 12 11 10 14 14 C 1.53243 * 109.34138 * 172.74969 * 13 12 11 15 15 H 1.09003 * 109.62969 * 173.73686 * 14 13 12 16 16 C 1.53006 * 109.62594 * 294.11903 * 14 13 12 17 17 N 1.47072 * 108.68084 * 53.92607 * 14 13 12 18 18 C 1.36942 * 120.88276 * 128.72691 * 17 14 13 19 19 H 1.08001 * 120.00043 * 209.44615 * 18 17 14 20 20 C 1.38812 * 119.99781 * 29.44394 * 18 17 14 21 21 N 1.31618 * 119.99842 * 13.08596 * 20 18 17 22 22 Si 1.86803 * 119.99910 * 193.08296 * 20 18 17 23 23 H 1.48496 * 109.47022 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47104 * 119.99930 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00347 * 22 20 18 26 26 C 1.47478 * 117.98356 * 308.89844 * 17 14 13 27 27 H 1.08998 * 109.75293 * 291.22811 * 26 17 14 28 28 C 1.53001 * 109.55938 * 170.81327 * 26 17 14 29 29 C 1.46900 * 111.00011 * 65.70049 * 12 11 10 30 30 H 1.08999 * 109.46853 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46938 * 299.99795 * 1 2 3 32 32 H 1.08999 * 109.46872 * 59.99937 * 1 2 3 33 33 H 1.08998 * 109.47302 * 240.00678 * 2 1 3 34 34 H 1.08993 * 109.47534 * 119.99875 * 2 1 3 35 35 H 0.96707 * 117.00135 * 179.97438 * 8 6 5 36 36 H 1.08002 * 126.64996 * 180.26669 * 9 5 4 37 37 H 1.09000 * 109.46840 * 320.00385 * 11 10 3 38 38 H 1.09000 * 109.47276 * 200.00360 * 11 10 3 39 39 H 1.08998 * 109.49335 * 52.78968 * 13 12 11 40 40 H 1.09003 * 109.51616 * 292.71857 * 13 12 11 41 41 H 1.09002 * 109.46894 * 59.61075 * 16 14 13 42 42 H 1.08997 * 109.46709 * 299.61198 * 16 14 13 43 43 H 1.09000 * 109.47017 * 179.61403 * 16 14 13 44 44 H 0.97006 * 119.99713 * 174.98614 * 21 20 18 45 45 H 1.09006 * 109.46973 * 297.46546 * 28 26 17 46 46 H 1.09008 * 109.47423 * 57.46313 * 28 26 17 47 47 H 1.09000 * 109.47316 * 177.46349 * 28 26 17 48 48 H 1.09000 * 109.49156 * 307.21222 * 29 12 11 49 49 H 1.09001 * 109.49139 * 67.25900 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2929 2.1558 -1.0887 5 6 2.7250 3.3772 -0.7115 6 6 3.1121 4.4683 -1.6088 7 8 3.4880 5.5295 -1.1488 8 8 3.0519 4.2960 -2.9453 9 6 2.7329 3.4194 0.6541 10 6 2.2947 2.1629 1.0990 11 6 2.1392 1.7252 2.5326 12 7 3.2980 0.9120 2.9247 13 6 3.0754 0.2722 4.2281 14 6 4.2207 -0.7043 4.5165 15 1 4.1201 -1.0983 5.5278 16 6 4.1798 -1.8559 3.5099 17 7 5.4967 0.0162 4.3915 18 6 6.4342 -0.0364 5.3884 19 1 7.1045 0.7961 5.5437 20 6 6.5228 -1.1596 6.1992 21 7 5.8969 -2.2668 5.8604 22 14 7.5303 -1.0996 7.7711 23 1 8.1295 0.2505 7.9238 24 1 6.6514 -1.3849 8.9335 25 1 8.6104 -2.1166 7.7058 26 6 5.7325 0.7981 3.1635 27 1 5.8510 0.1244 2.3149 28 6 6.9973 1.6430 3.3292 29 6 4.5279 1.7154 2.9285 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3171 5.0448 -3.4969 36 1 3.0229 4.2567 1.2716 37 1 1.2291 1.1341 2.6353 38 1 2.0769 2.6029 3.1758 39 1 2.1304 -0.2706 4.2102 40 1 3.0425 1.0342 5.0069 41 1 4.2805 -1.4591 2.4997 42 1 3.2304 -2.3836 3.6001 43 1 4.9994 -2.5452 3.7130 44 1 6.0171 -3.0724 6.3873 45 1 6.8559 2.3528 4.1443 46 1 7.8418 0.9923 3.5565 47 1 7.1953 2.1858 2.4049 48 1 4.6362 2.2192 1.9680 49 1 4.4747 2.4579 3.7247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597763339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:33 Heat of formation + Delta-G solvation = -47.512555 kcal Electronic energy + Delta-G solvation = -30771.564980 eV Core-core repulsion = 26701.165379 eV Total energy + Delta-G solvation = -4070.399601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.91075 -40.11797 -38.53528 -36.42275 -35.50096 -34.03324 -33.03630 -32.49794 -31.12309 -29.58065 -27.89667 -26.52971 -25.89606 -25.13640 -23.99951 -22.65216 -21.97688 -21.33973 -20.63668 -19.87970 -18.52986 -18.11101 -17.60118 -16.78164 -16.20676 -15.81395 -15.42615 -15.18918 -14.86605 -14.57088 -14.20389 -14.05687 -13.86073 -13.70802 -13.32816 -13.29928 -13.15911 -12.87467 -12.57410 -12.13612 -12.08418 -11.90011 -11.82715 -11.55529 -11.53164 -11.19460 -11.14348 -11.04287 -10.91754 -10.83896 -10.59216 -10.48400 -10.43606 -10.04429 -9.88693 -9.88005 -9.42509 -9.21980 -8.59496 -8.42630 -7.78187 -6.53046 -5.73739 -3.16500 0.69764 2.10436 2.25581 2.72616 3.04531 3.37634 3.46280 3.47364 4.46260 4.49457 4.52686 4.64474 4.89285 5.01902 5.10155 5.24583 5.28772 5.34695 5.41938 5.46868 5.66837 5.71261 5.74501 5.78861 5.85902 5.90808 5.96799 6.06513 6.08454 6.15051 6.18190 6.26272 6.28266 6.35407 6.38720 6.47040 6.66303 6.83398 6.88069 7.00500 7.06981 7.11716 7.27663 7.54832 7.57147 7.59787 7.78524 7.87858 8.00749 8.52146 9.28837 9.89438 10.49629 11.34590 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.003271 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.424839 B = 8557.568852 C = 9661.165614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.066 3.934 4 O -0.151 6.151 5 C -0.087 4.087 6 C 0.574 3.426 7 O -0.499 6.499 8 O -0.506 6.506 9 C -0.084 4.084 10 C -0.177 4.177 11 C 0.120 3.880 12 N -0.524 5.524 13 C 0.041 3.959 14 C 0.199 3.801 15 H 0.094 0.906 16 C -0.134 4.134 17 N -0.585 5.585 18 C -0.245 4.245 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.172 3.828 27 H 0.032 0.968 28 C -0.138 4.138 29 C 0.051 3.949 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.417 0.583 36 H 0.160 0.840 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.032 0.968 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.252 0.748 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 7.606 -13.578 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C 0.012 3.988 4 O -0.047 6.047 5 C -0.136 4.136 6 C 0.419 3.581 7 O -0.389 6.389 8 O -0.318 6.318 9 C -0.104 4.104 10 C -0.178 4.178 11 C -0.008 4.008 12 N -0.248 5.248 13 C -0.088 4.088 14 C 0.092 3.908 15 H 0.112 0.888 16 C -0.193 4.193 17 N -0.309 5.309 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.065 3.935 27 H 0.050 0.950 28 C -0.196 4.196 29 C -0.079 4.079 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.275 0.725 36 H 0.178 0.822 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.038 0.962 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.078 0.922 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.882 6.981 -13.714 18.847 hybrid contribution 0.707 1.260 1.108 1.821 sum -10.174 8.241 -12.606 18.175 Atomic orbital electron populations 1.21767 0.93715 1.02673 1.02376 1.20336 0.96223 0.86610 1.05698 1.22840 0.98330 0.94470 0.83163 1.84076 1.64479 1.21509 1.34655 1.20311 1.15332 0.85691 0.92289 1.18859 0.73971 0.84673 0.80558 1.91003 1.44547 1.26027 1.77364 1.84678 1.80968 1.48003 1.18171 1.21890 0.97768 0.98678 0.92092 1.20100 1.07620 0.93380 0.96740 1.20435 0.95161 0.96332 0.88824 1.61979 1.01339 1.31048 1.30458 1.22901 1.00593 0.97740 0.87582 1.20380 0.81939 0.88737 0.99695 0.88785 1.21968 0.99779 0.99285 0.98263 1.44347 1.15129 1.56194 1.15188 1.19207 1.12584 0.99116 1.06566 0.91436 1.25084 0.99343 0.95200 0.99835 1.69929 1.45407 0.99780 1.39562 0.86268 0.79590 0.77353 0.83847 1.20488 1.21773 1.21859 1.20511 0.90873 0.91573 0.90505 0.95022 1.21809 0.98876 0.99547 0.99409 1.22648 0.91085 0.95159 0.98965 0.91220 0.92080 0.92543 0.89764 0.86707 0.72453 0.82200 0.90124 0.94305 0.92137 0.95805 0.94939 0.96210 0.90822 0.93803 0.93162 0.91667 0.94367 0.92234 0.95534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.05 -0.53 6.25 -27.88 -0.17 -0.70 16 3 C 0.07 0.82 6.57 -35.40 -0.23 0.59 16 4 O -0.15 -2.03 10.67 4.73 0.05 -1.98 16 5 C -0.09 -1.15 7.18 -36.85 -0.26 -1.42 16 6 C 0.57 7.06 8.30 34.05 0.28 7.34 16 7 O -0.50 -7.10 17.65 -19.36 -0.34 -7.45 16 8 O -0.51 -4.69 13.44 -42.47 -0.57 -5.27 16 9 C -0.08 -1.11 9.76 -39.38 -0.38 -1.49 16 10 C -0.18 -2.32 4.69 -104.94 -0.49 -2.81 16 11 C 0.12 1.63 4.96 -4.98 -0.02 1.60 16 12 N -0.52 -8.67 4.12 -235.77 -0.97 -9.64 16 13 C 0.04 0.75 5.01 -3.70 -0.02 0.73 16 14 C 0.20 4.46 2.33 -67.49 -0.16 4.30 16 15 H 0.09 2.42 6.20 -51.93 -0.32 2.10 16 16 C -0.13 -2.90 8.96 37.16 0.33 -2.57 16 17 N -0.59 -13.96 2.74 -156.71 -0.43 -14.38 16 18 C -0.25 -6.42 8.64 -15.06 -0.13 -6.55 16 19 H 0.07 1.76 6.31 -52.49 -0.33 1.43 16 20 C 0.00 0.09 5.01 -17.43 -0.09 0.01 16 21 N -0.90 -24.76 9.63 55.49 0.53 -24.22 16 22 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.17 3.57 3.25 -67.28 -0.22 3.36 16 27 H 0.03 0.71 7.63 -51.93 -0.40 0.32 16 28 C -0.14 -2.65 7.97 37.16 0.30 -2.35 16 29 C 0.05 0.91 4.76 -3.71 -0.02 0.89 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.30 7.86 -51.93 -0.41 0.89 16 35 H 0.42 1.62 9.11 45.56 0.42 2.04 16 36 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.08 0.97 7.96 -51.93 -0.41 0.55 16 38 H 0.04 0.53 8.12 -51.93 -0.42 0.10 16 39 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.68 7.07 -51.93 -0.37 0.31 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 1.85 6.79 -51.93 -0.35 1.49 16 44 H 0.25 6.78 8.32 -40.82 -0.34 6.44 16 45 H 0.05 0.97 7.73 -51.93 -0.40 0.56 16 46 H 0.06 1.34 7.41 -51.92 -0.38 0.95 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.01 6.43 -51.93 -0.33 0.68 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -30.36 390.82 -8.86 -39.22 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.07 Total: 1.48 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.92 Total: 0.08 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.86 Total: -48.25 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.86 Total: -14.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.36 -8.86 -39.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597763339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.289 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds