Wall clock time and date at job start Sat Apr 11 2020 04:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.46971 * 2 1 4 4 N 1.30835 * 125.89596 * 270.02740 * 3 2 1 5 5 N 1.40084 * 108.20120 * 179.97438 * 4 3 2 6 6 C 1.46501 * 126.03619 * 180.02562 * 5 4 3 7 7 C 1.34946 * 107.92724 * 359.75445 * 5 4 3 8 8 C 1.50706 * 126.13176 * 180.23779 * 7 5 4 9 9 C 1.53004 * 109.46972 * 90.17766 * 8 7 5 10 10 C 1.35318 * 107.74485 * 0.39270 * 7 5 4 11 11 C 1.50698 * 126.04042 * 179.87303 * 10 7 5 12 12 C 1.50701 * 109.47131 * 269.71320 * 11 10 7 13 13 O 1.20829 * 119.99880 * 0.02562 * 12 11 10 14 14 O 1.34226 * 120.00116 * 179.97438 * 12 11 10 15 15 C 1.45203 * 117.00272 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47439 * 180.02562 * 15 14 12 17 17 C 1.50705 * 112.99920 * 53.52136 * 16 15 14 18 18 H 1.08003 * 119.99885 * 245.39772 * 17 16 15 19 19 C 1.37873 * 120.00048 * 65.39191 * 17 16 15 20 20 N 1.31518 * 120.00291 * 6.61695 * 19 17 16 21 21 Si 1.86807 * 119.99845 * 186.61203 * 19 17 16 22 22 H 1.48495 * 109.47122 * 90.00387 * 21 19 17 23 23 H 1.48507 * 109.46810 * 210.00346 * 21 19 17 24 24 H 1.48495 * 109.47114 * 330.00342 * 21 19 17 25 25 C 1.54038 * 113.81757 * 281.53367 * 16 15 14 26 26 O 1.44180 * 85.51740 * 223.19231 * 25 16 15 27 27 C 1.44176 * 93.34032 * 24.19252 * 26 25 16 28 28 H 1.08997 * 109.47103 * 299.99625 * 1 2 3 29 29 H 1.08997 * 109.47356 * 60.00351 * 1 2 3 30 30 H 1.09004 * 109.46731 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47103 * 240.00375 * 2 1 3 32 32 H 1.08997 * 109.47356 * 119.99649 * 2 1 3 33 33 H 1.08996 * 109.47683 * 90.02781 * 6 5 4 34 34 H 1.09003 * 109.46831 * 210.02542 * 6 5 4 35 35 H 1.08998 * 109.47265 * 330.01872 * 6 5 4 36 36 H 1.08993 * 109.47145 * 210.18130 * 8 7 5 37 37 H 1.09000 * 109.46767 * 330.18299 * 8 7 5 38 38 H 1.09000 * 109.46611 * 60.00204 * 9 8 7 39 39 H 1.08993 * 109.46992 * 180.02562 * 9 8 7 40 40 H 1.08997 * 109.47093 * 300.00480 * 9 8 7 41 41 H 1.09001 * 109.47172 * 149.71358 * 11 10 7 42 42 H 1.08999 * 109.47301 * 29.71153 * 11 10 7 43 43 H 1.09000 * 109.47038 * 300.00265 * 15 14 12 44 44 H 1.09000 * 109.46733 * 59.99922 * 15 14 12 45 45 H 0.96997 * 120.00110 * 180.02562 * 20 19 17 46 46 H 1.08992 * 113.86481 * 337.34571 * 25 16 15 47 47 H 1.09000 * 113.85946 * 109.04972 * 25 16 15 48 48 H 1.08994 * 113.86808 * 221.65542 * 27 26 25 49 49 H 1.09001 * 113.98246 * 89.96474 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2875 2.1443 -1.0599 5 7 2.7319 3.4027 -0.6341 6 6 3.1246 4.5167 -1.5008 7 6 2.7289 3.4096 0.7153 8 6 3.1289 4.5630 1.5990 9 6 1.9017 5.4273 1.8961 10 6 2.3055 2.1941 1.1330 11 6 2.1497 1.7536 2.5657 12 6 3.4376 1.1338 3.0436 13 8 4.3849 1.0581 2.2974 14 8 3.5327 0.6669 4.2984 15 6 4.8033 0.0835 4.6903 16 6 4.7209 -0.3898 6.1428 17 6 3.5555 -1.3110 6.3967 18 1 2.7550 -1.0010 7.0521 19 6 3.5111 -2.5493 5.7923 20 7 4.5428 -2.9805 5.0998 21 14 1.9857 -3.6150 5.9570 22 1 1.0492 -3.3141 4.8446 23 1 2.3743 -5.0473 5.9033 24 1 1.3211 -3.3308 7.2542 25 6 4.8568 0.7450 7.1755 26 8 5.7196 -0.1622 7.8907 27 6 6.0579 -0.9090 6.7047 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2531 5.1353 -1.7147 34 1 3.8825 5.1180 -0.9986 35 1 3.5305 4.1257 -2.4337 36 1 3.5383 4.1797 2.5336 37 1 3.8829 5.1648 1.0917 38 1 1.1477 4.8254 2.4033 39 1 2.1911 6.2617 2.5348 40 1 1.4924 5.8105 0.9614 41 1 1.3461 1.0205 2.6352 42 1 1.9093 2.6163 3.1870 43 1 5.0282 -0.7651 4.0442 44 1 5.5909 0.8311 4.5955 45 1 4.5114 -3.8515 4.6742 46 1 5.3663 1.6297 6.7940 47 1 3.9299 0.9774 7.6997 48 1 6.0836 -1.9882 6.8555 49 1 6.9341 -0.5310 6.1780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646885129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:37 Heat of formation + Delta-G solvation = -38.299763 kcal Electronic energy + Delta-G solvation = -30364.690540 eV Core-core repulsion = 26294.690436 eV Total energy + Delta-G solvation = -4070.000104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.49195 -39.66275 -38.92740 -35.63480 -35.15724 -34.02243 -32.87611 -32.02370 -30.88056 -29.84917 -28.01344 -26.10819 -25.37543 -25.12004 -24.16121 -23.69688 -23.24396 -20.60813 -19.33164 -19.19918 -18.93187 -16.92706 -16.66138 -16.33458 -15.74489 -15.61282 -15.40762 -14.95343 -14.68395 -14.57296 -14.33682 -14.30081 -14.06881 -13.92661 -13.63549 -13.21556 -13.14253 -12.90786 -12.63461 -12.42693 -12.25867 -11.97725 -11.90938 -11.76695 -11.61176 -11.52647 -11.39768 -11.15530 -11.05176 -10.97667 -10.74473 -10.43426 -10.32227 -10.02031 -9.87857 -9.48947 -9.36094 -9.02756 -9.02532 -8.73802 -8.30584 -8.21737 -6.14973 -4.17454 1.86197 2.46831 2.69277 2.95005 3.27927 3.34981 3.38007 3.72973 4.36029 4.38850 4.41727 4.72206 4.88817 4.91411 4.92773 5.05672 5.08861 5.17049 5.19186 5.20381 5.26155 5.36049 5.40678 5.54152 5.56746 5.62109 5.65609 5.77568 5.84824 5.94878 5.98623 6.01342 6.08598 6.16772 6.21104 6.23790 6.29134 6.33393 6.41686 6.60353 6.73998 7.00942 7.04168 7.17261 7.29916 7.38545 7.47512 7.79559 7.81131 8.21146 8.62167 8.79428 9.46084 10.93522 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003670 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.989906 B = 7626.862614 C = 8994.453512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.102 3.898 4 N -0.300 5.300 5 N -0.375 5.375 6 C 0.105 3.895 7 C 0.104 3.896 8 C -0.064 4.064 9 C -0.145 4.145 10 C -0.216 4.216 11 C -0.035 4.035 12 C 0.449 3.551 13 O -0.517 6.517 14 O -0.332 6.332 15 C 0.084 3.916 16 C 0.034 3.966 17 C -0.484 4.484 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.897 3.103 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.028 3.972 26 O -0.389 6.389 27 C 0.049 3.951 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.264 0.736 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 14.747 -10.242 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.065 4.065 4 N -0.121 5.121 5 N -0.157 5.157 6 C -0.037 4.037 7 C -0.023 4.023 8 C -0.103 4.103 9 C -0.203 4.203 10 C -0.227 4.227 11 C -0.074 4.074 12 C 0.292 3.708 13 O -0.406 6.406 14 O -0.247 6.247 15 C 0.011 3.989 16 C 0.033 3.967 17 C -0.522 4.522 18 H 0.084 0.916 19 C -0.135 4.135 20 N -0.526 5.526 21 Si 0.725 3.275 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.049 4.049 26 O -0.308 6.308 27 C -0.028 4.028 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.118 0.882 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.422 14.683 -11.654 19.514 hybrid contribution -0.436 -0.610 0.418 0.858 sum -5.858 14.073 -11.236 18.937 Atomic orbital electron populations 1.21697 0.94198 1.02058 1.02111 1.19996 0.96025 0.88916 1.03843 1.22083 0.97792 0.96545 0.90061 1.77278 1.21902 0.90539 1.22374 1.48159 1.52264 1.11294 1.03953 1.21764 1.00754 0.86269 0.94914 1.20700 1.00103 0.97068 0.84477 1.20244 0.98554 0.92958 0.98588 1.21731 0.97397 0.99473 1.01730 1.19025 1.15176 0.93941 0.94589 1.19508 0.94421 1.01806 0.91642 1.23610 0.90055 0.76098 0.81074 1.90604 1.39929 1.53941 1.56164 1.86534 1.40323 1.68999 1.28892 1.23378 0.79764 0.95716 1.00084 1.21096 0.95785 0.92027 0.87779 1.20541 1.04118 0.99275 1.28250 0.91604 1.24942 0.96283 0.97476 0.94825 1.69890 1.28979 1.19909 1.33842 0.86501 0.83078 0.79285 0.78681 1.20420 1.21271 1.19716 1.24089 0.93412 0.93250 0.94144 1.89489 1.66128 1.46221 1.28934 1.23920 0.96069 0.98406 0.84390 0.92285 0.92698 0.91876 0.90401 0.89695 0.91068 0.89765 0.89430 0.89138 0.90684 0.91751 0.91622 0.92860 0.87321 0.87863 0.89869 0.94784 0.92596 0.92966 0.90390 0.88239 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.05 -0.68 6.17 -27.88 -0.17 -0.85 16 3 C 0.10 1.59 6.47 -82.40 -0.53 1.06 16 4 N -0.30 -4.74 12.58 33.67 0.42 -4.32 16 5 N -0.38 -4.98 4.01 -63.88 -0.26 -5.24 16 6 C 0.10 0.87 11.27 59.85 0.67 1.55 16 7 C 0.10 1.38 6.19 -82.26 -0.51 0.87 16 8 C -0.06 -0.64 5.77 -27.88 -0.16 -0.80 16 9 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 10 C -0.22 -3.26 4.59 -105.06 -0.48 -3.74 16 11 C -0.03 -0.52 5.58 -29.04 -0.16 -0.68 16 12 C 0.45 8.72 7.95 36.01 0.29 9.00 16 13 O -0.52 -11.47 15.78 -18.75 -0.30 -11.76 16 14 O -0.33 -7.19 9.82 -39.25 -0.39 -7.58 16 15 C 0.08 1.96 4.67 37.15 0.17 2.13 16 16 C 0.03 0.81 0.62 -154.58 -0.10 0.71 16 17 C -0.48 -12.67 7.92 -34.44 -0.27 -12.94 16 18 H 0.07 1.73 7.82 -52.48 -0.41 1.32 16 19 C 0.07 1.77 5.25 -17.82 -0.09 1.67 16 20 N -0.89 -24.00 11.31 55.43 0.63 -23.37 16 21 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.03 0.60 8.35 37.61 0.31 0.91 16 26 O -0.39 -9.23 12.40 -35.23 -0.44 -9.67 16 27 C 0.05 1.16 7.91 37.61 0.30 1.46 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.28 7.91 -51.93 -0.41 0.86 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.53 7.06 -51.93 -0.37 0.16 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.98 7.77 -51.93 -0.40 0.58 16 37 H 0.07 0.62 7.08 -51.93 -0.37 0.26 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 1.48 7.92 -51.93 -0.41 1.07 16 42 H 0.10 1.24 7.76 -51.93 -0.40 0.83 16 43 H 0.08 2.16 7.21 -51.93 -0.37 1.79 16 44 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 45 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.05 1.00 8.03 -51.93 -0.42 0.58 16 47 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 48 H 0.10 2.53 7.36 -51.93 -0.38 2.15 16 49 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -32.58 407.01 -7.36 -39.94 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.15 Total: 1.94 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 0.00 Total: -1.66 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.79 Total: -32.93 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.12 Total: -29.01 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.58 -7.36 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646885129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.638 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds