Wall clock time and date at job start Sat Apr 11 2020 04:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46645 * 2 1 4 4 C 1.52994 * 109.47274 * 120.00224 * 2 1 3 5 5 C 1.50699 * 109.47331 * 299.99768 * 4 2 1 6 6 O 1.21280 * 120.00037 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.47019 * 125.64420 * 359.97438 * 7 5 4 9 9 C 1.54327 * 107.26777 * 178.96333 * 8 7 5 10 10 C 1.55160 * 102.94220 * 337.80433 * 9 8 7 11 11 H 1.09000 * 111.00408 * 277.39304 * 10 9 8 12 12 C 1.52998 * 111.00086 * 153.57851 * 10 9 8 13 13 N 1.46495 * 109.47546 * 66.45759 * 12 10 9 14 14 C 1.36938 * 120.00206 * 180.27562 * 13 12 10 15 15 H 1.07993 * 119.99754 * 359.71725 * 14 13 12 16 16 C 1.38812 * 119.99742 * 179.72350 * 14 13 12 17 17 N 1.31613 * 120.00326 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99747 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47121 * 59.99767 * 18 16 14 20 20 H 1.48505 * 109.47347 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47134 * 299.99889 * 18 16 14 22 22 C 1.47424 * 125.64793 * 180.02562 * 7 5 4 23 23 C 1.52998 * 109.47016 * 240.00682 * 2 1 3 24 24 C 1.52996 * 109.47271 * 54.66038 * 23 2 1 25 25 F 1.39900 * 109.47059 * 55.41946 * 24 23 2 26 26 F 1.39904 * 109.47256 * 175.41610 * 24 23 2 27 27 F 1.39897 * 109.47536 * 295.41686 * 24 23 2 28 28 H 1.09001 * 109.46869 * 290.85731 * 1 2 3 29 29 H 1.08994 * 109.47497 * 50.85826 * 1 2 3 30 30 H 1.09005 * 109.46769 * 170.86452 * 1 2 3 31 31 H 1.09009 * 109.46586 * 191.96471 * 3 2 1 32 32 H 1.08994 * 109.47167 * 311.96566 * 3 2 1 33 33 H 1.08997 * 109.46666 * 71.97153 * 3 2 1 34 34 H 1.09002 * 109.47039 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47386 * 60.00388 * 4 2 1 36 36 H 1.08996 * 109.88734 * 59.54338 * 8 7 5 37 37 H 1.08997 * 110.01321 * 298.44714 * 8 7 5 38 38 H 1.09007 * 110.72040 * 219.44455 * 9 8 7 39 39 H 1.09005 * 110.87468 * 96.24063 * 9 8 7 40 40 H 1.08994 * 109.47355 * 306.45069 * 12 10 9 41 41 H 1.09005 * 109.46563 * 186.45719 * 12 10 9 42 42 H 0.97005 * 119.99641 * 359.97438 * 13 12 10 43 43 H 0.96997 * 120.00125 * 180.02562 * 17 16 14 44 44 H 1.09000 * 110.36734 * 85.26795 * 22 7 5 45 45 H 1.09003 * 110.36638 * 322.94425 * 22 7 5 46 46 H 1.08998 * 109.47048 * 174.66650 * 23 2 1 47 47 H 1.09004 * 109.46925 * 294.66351 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5378 -0.0109 2.4797 6 8 0.8402 0.9749 2.3685 7 7 1.8639 -0.4711 3.7038 8 6 2.6974 -1.6498 3.9819 9 6 2.8185 -1.7737 5.5155 10 6 2.5162 -0.3329 6.0054 11 1 3.4053 0.2948 5.9456 12 6 1.9513 -0.3444 7.4273 13 7 2.9816 -0.8110 8.3584 14 6 2.7021 -0.9104 9.6952 15 1 1.7235 -0.6405 10.0637 16 6 3.6766 -1.3579 10.5766 17 7 4.8691 -1.6872 10.1274 18 14 3.2956 -1.4928 12.4003 19 1 2.1681 -2.4381 12.6018 20 1 4.4946 -1.9909 13.1211 21 1 2.9211 -0.1561 12.9280 22 6 1.4429 0.1234 4.9855 23 6 2.0400 -0.7211 -1.2493 24 6 1.4234 -0.0814 -2.4948 25 9 1.6993 1.2901 -2.4999 26 9 1.9687 -0.6709 -3.6405 27 9 0.0384 -0.2784 -2.4833 28 1 -0.3633 0.3659 0.9603 29 1 -0.3634 0.6487 -0.7970 30 1 -0.3633 -1.0147 -0.1632 31 1 3.1090 1.4500 -0.2131 32 1 1.5131 2.0141 -0.7641 33 1 1.8611 1.8911 0.9772 34 1 3.1301 -0.7208 1.2493 35 1 1.6768 -1.7489 1.2491 36 1 3.6856 -1.5174 3.5415 37 1 2.2267 -2.5442 3.5739 38 1 3.8271 -2.0740 5.7997 39 1 2.0834 -2.4766 5.9076 40 1 1.0919 -1.0133 7.4714 41 1 1.6416 0.6636 7.7033 42 1 3.8605 -1.0537 8.0272 43 1 5.5499 -2.0003 10.7432 44 1 0.4612 -0.2523 5.2737 45 1 1.4273 1.2109 4.9122 46 1 3.1258 -0.6391 -1.2984 47 1 1.7568 -1.7727 -1.2029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662716770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:51 Heat of formation + Delta-G solvation = -180.913568 kcal Electronic energy + Delta-G solvation = -29890.746825 eV Core-core repulsion = 25272.705783 eV Total energy + Delta-G solvation = -4618.041043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.49188 -47.96067 -47.91744 -40.52814 -38.43649 -36.63928 -34.73480 -32.37762 -30.56081 -30.13634 -29.19849 -28.17555 -27.45793 -25.29249 -24.03886 -23.03389 -22.44783 -20.37001 -20.05595 -19.08679 -18.88933 -18.54364 -17.52098 -17.14059 -16.89252 -16.35713 -15.58486 -15.17566 -15.07964 -14.86246 -14.67664 -14.62161 -14.33475 -14.31253 -14.04373 -13.88282 -13.65116 -13.57456 -13.41049 -13.13498 -12.91818 -12.64316 -12.52504 -12.49641 -12.22399 -11.75763 -11.71731 -11.48705 -11.34555 -11.22009 -11.04249 -10.94148 -10.87453 -10.70947 -10.53854 -10.43265 -10.10299 -9.74208 -9.60053 -8.91323 -8.64844 -6.97146 -5.80862 -3.09604 2.43011 2.51361 2.88986 3.41810 3.46391 3.47152 3.48583 3.65842 3.71387 4.22268 4.39860 4.46114 4.52403 4.62384 4.70151 4.86158 4.89071 4.95745 5.05231 5.08830 5.20794 5.25525 5.35287 5.42498 5.52737 5.59586 5.67160 5.75269 5.75818 5.83900 5.89835 5.97890 5.99325 6.07660 6.14710 6.27492 6.31268 6.34633 6.41549 6.67536 6.79688 7.47195 7.66203 8.08544 8.38109 9.49527 10.06109 10.41009 11.41947 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.040827 B = 0.001839 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.663982 B =15222.432079 C =15442.820866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.046 4.046 3 C -0.170 4.170 4 C -0.126 4.126 5 C 0.529 3.471 6 O -0.533 6.533 7 N -0.616 5.616 8 C 0.098 3.902 9 C -0.121 4.121 10 C -0.106 4.106 11 H 0.084 0.916 12 C 0.164 3.836 13 N -0.731 5.731 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.113 3.887 23 C -0.160 4.160 24 C 0.454 3.546 25 F -0.177 7.177 26 F -0.189 7.189 27 F -0.179 7.179 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.110 0.890 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 -0.072 -26.645 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.046 4.046 3 C -0.227 4.227 4 C -0.165 4.165 5 C 0.318 3.682 6 O -0.411 6.411 7 N -0.350 5.350 8 C -0.025 4.025 9 C -0.159 4.159 10 C -0.125 4.125 11 H 0.102 0.898 12 C 0.036 3.964 13 N -0.375 5.375 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.010 4.010 23 C -0.198 4.198 24 C 0.400 3.600 25 F -0.159 7.159 26 F -0.171 7.171 27 F -0.161 7.161 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.128 0.872 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.368 0.494 -26.653 27.193 hybrid contribution 0.209 -0.305 0.716 0.806 sum -5.159 0.188 -25.937 26.446 Atomic orbital electron populations 1.22467 0.92859 1.01855 1.05240 1.20240 0.97418 0.96177 0.90785 1.22507 1.00202 0.94504 1.05482 1.21638 1.02608 1.00393 0.91908 1.20092 0.80376 0.84452 0.83291 1.90612 1.38319 1.26531 1.85660 1.48607 1.51096 1.29581 1.05673 1.22155 0.94552 0.87656 0.98138 1.22641 1.03935 0.97697 0.91620 1.22568 0.98282 0.96282 0.95375 0.89786 1.20545 0.92328 0.97133 0.86387 1.42291 1.11999 1.79570 1.03646 1.19180 0.97402 1.36937 0.83640 0.91206 1.24736 0.95963 1.02122 0.98129 1.69637 1.03640 1.50945 1.34043 0.86256 0.76878 0.77784 0.85191 1.21257 1.21692 1.21251 1.22264 0.98019 0.98987 0.81718 1.23039 1.03381 1.02212 0.91166 1.20563 0.76707 0.77008 0.85706 1.93146 1.93459 1.32805 1.96464 1.93187 1.85699 1.83935 1.54235 1.93174 1.31549 1.94779 1.96582 0.89230 0.91737 0.92989 0.93190 0.90987 0.89418 0.88573 0.88642 0.91470 0.91534 0.89463 0.90166 0.96005 0.96014 0.78245 0.93448 0.91204 0.90423 0.87191 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 6.89 37.16 0.26 -1.32 16 2 C -0.05 -0.36 0.54 -154.51 -0.08 -0.45 16 3 C -0.17 -1.61 7.35 37.16 0.27 -1.33 16 4 C -0.13 -0.96 3.96 -27.89 -0.11 -1.07 16 5 C 0.53 6.09 7.11 -10.98 -0.08 6.01 16 6 O -0.53 -7.66 11.72 5.56 0.07 -7.59 16 7 N -0.62 -7.20 3.33 -170.51 -0.57 -7.76 16 8 C 0.10 0.97 6.49 -3.06 -0.02 0.95 16 9 C -0.12 -1.56 6.13 -24.89 -0.15 -1.71 16 10 C -0.11 -1.55 3.11 -88.46 -0.27 -1.83 16 11 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 12 C 0.16 3.09 5.70 -4.05 -0.02 3.07 16 13 N -0.73 -17.63 5.45 -59.92 -0.33 -17.96 16 14 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 18 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.11 1.49 6.38 -2.52 -0.02 1.48 16 23 C -0.16 -0.93 4.51 -26.73 -0.12 -1.05 16 24 C 0.45 3.57 2.96 37.16 0.11 3.68 16 25 F -0.18 -1.60 13.78 2.25 0.03 -1.57 16 26 F -0.19 -1.58 17.32 2.25 0.04 -1.54 16 27 F -0.18 -1.60 13.96 2.25 0.03 -1.57 16 28 H 0.09 1.06 5.37 -51.93 -0.28 0.78 16 29 H 0.06 0.63 6.03 -51.93 -0.31 0.32 16 30 H 0.05 0.43 8.03 -51.93 -0.42 0.01 16 31 H 0.05 0.41 8.05 -51.92 -0.42 -0.01 16 32 H 0.07 0.71 5.67 -51.93 -0.29 0.41 16 33 H 0.09 1.04 5.35 -51.93 -0.28 0.77 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.09 8.01 -51.93 -0.42 0.68 16 40 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 9.64 7.53 -40.82 -0.31 9.33 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 44 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 45 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 46 H 0.11 0.47 8.09 -51.93 -0.42 0.05 16 47 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -31.12 373.69 -7.21 -38.32 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.33 Total: 4.60 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.49 Total: -0.77 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.17 Total: -52.50 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.07 Total: -7.59 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.10 Total: -4.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.12 -7.21 -38.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662716770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.590 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds