Wall clock time and date at job start Sat Apr 11 2020 04:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 C 1.53001 * 109.47631 * 120.00266 * 2 1 3 5 5 C 1.50704 * 109.46898 * 300.00128 * 4 2 1 6 6 O 1.21277 * 119.99804 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99811 * 179.97438 * 5 4 2 8 8 C 1.47022 * 125.64870 * 0.04687 * 7 5 4 9 9 C 1.54380 * 107.28493 * 181.05349 * 8 7 5 10 10 C 1.55147 * 102.92072 * 22.13620 * 9 8 7 11 11 H 1.09001 * 111.00513 * 82.64418 * 10 9 8 12 12 C 1.53002 * 111.00292 * 206.45168 * 10 9 8 13 13 N 1.46495 * 109.47146 * 290.41956 * 12 10 9 14 14 C 1.36943 * 119.99907 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99900 * 359.97438 * 14 13 12 16 16 C 1.38807 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00264 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00031 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47419 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47494 * 300.00077 * 18 16 14 21 21 H 1.48502 * 109.47048 * 59.99944 * 18 16 14 22 22 C 1.47426 * 125.64800 * 179.97438 * 7 5 4 23 23 C 1.53003 * 109.46989 * 240.00139 * 2 1 3 24 24 C 1.53000 * 109.47110 * 54.66786 * 23 2 1 25 25 F 1.39898 * 109.47255 * 55.41187 * 24 23 2 26 26 F 1.39899 * 109.46943 * 175.41441 * 24 23 2 27 27 F 1.39901 * 109.46928 * 295.41515 * 24 23 2 28 28 H 1.09007 * 109.46605 * 290.85951 * 1 2 3 29 29 H 1.08993 * 109.47195 * 50.85735 * 1 2 3 30 30 H 1.09002 * 109.46797 * 170.86017 * 1 2 3 31 31 H 1.09000 * 109.46912 * 191.96368 * 3 2 1 32 32 H 1.08997 * 109.47403 * 311.96431 * 3 2 1 33 33 H 1.09002 * 109.46831 * 71.97076 * 3 2 1 34 34 H 1.09000 * 109.47691 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46909 * 59.99896 * 4 2 1 36 36 H 1.08998 * 109.88092 * 300.43313 * 8 7 5 37 37 H 1.08992 * 109.88614 * 61.45125 * 8 7 5 38 38 H 1.08999 * 110.69896 * 263.78796 * 9 8 7 39 39 H 1.08997 * 110.75228 * 140.50552 * 9 8 7 40 40 H 1.08998 * 109.47198 * 170.41899 * 12 10 9 41 41 H 1.09000 * 109.47193 * 50.42103 * 12 10 9 42 42 H 0.96998 * 120.00225 * 359.97438 * 13 12 10 43 43 H 0.97005 * 120.00241 * 0.02562 * 17 16 14 44 44 H 1.09007 * 110.36475 * 37.07540 * 22 7 5 45 45 H 1.08997 * 110.46338 * 274.80194 * 22 7 5 46 46 H 1.09003 * 109.46954 * 174.66187 * 23 2 1 47 47 H 1.08991 * 109.47479 * 294.66422 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5378 -0.0109 2.4797 6 8 0.8409 0.9753 2.3684 7 7 1.8631 -0.4717 3.7037 8 6 2.6970 -1.6502 3.9820 9 6 2.7732 -1.8063 5.5160 10 6 1.5159 -1.0404 6.0055 11 1 0.6275 -1.6691 5.9458 12 6 1.7151 -0.5114 7.4273 13 7 1.7363 -1.6345 8.3677 14 6 1.9033 -1.4030 9.7071 15 1 2.0199 -0.3925 10.0700 16 6 1.9239 -2.4672 10.5980 17 7 1.7823 -3.6987 10.1557 18 14 2.1525 -2.1515 12.4249 19 1 2.1375 -3.4438 13.1562 20 1 3.4522 -1.4695 12.6506 21 1 1.0490 -1.2901 12.9203 22 6 1.4429 0.1233 4.9854 23 6 2.0400 -0.7212 -1.2493 24 6 1.4235 -0.0815 -2.4949 25 9 1.6993 1.2900 -2.4999 26 9 1.9688 -0.6711 -3.6404 27 9 0.0384 -0.2785 -2.4833 28 1 -0.3633 0.3660 0.9604 29 1 -0.3633 0.6487 -0.7970 30 1 -0.3633 -1.0147 -0.1632 31 1 3.1089 1.4500 -0.2130 32 1 1.5133 2.0142 -0.7641 33 1 1.8612 1.8911 0.9772 34 1 3.1301 -0.7209 1.2494 35 1 1.6768 -1.7490 1.2491 36 1 2.2428 -2.5379 3.5418 37 1 3.6959 -1.5027 3.5717 38 1 3.6812 -1.3461 5.9054 39 1 2.7196 -2.8572 5.8003 40 1 0.8963 0.1611 7.6829 41 1 2.6602 0.0286 7.4850 42 1 1.6312 -2.5420 8.0418 43 1 1.6640 -3.8627 9.2070 44 1 0.4226 0.5002 4.9123 45 1 2.1227 0.9248 5.2745 46 1 3.1258 -0.6392 -1.2984 47 1 1.7568 -1.7727 -1.2029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662716771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:43:54 Heat of formation + Delta-G solvation = -180.540441 kcal Electronic energy + Delta-G solvation = -29929.272660 eV Core-core repulsion = 25311.247797 eV Total energy + Delta-G solvation = -4618.024863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.51354 -47.98313 -47.93835 -40.58414 -38.50741 -36.69315 -34.98934 -32.55716 -30.53139 -30.14378 -29.21592 -28.13799 -27.48901 -25.08337 -24.02775 -23.06664 -22.63251 -20.44878 -20.15020 -19.13457 -18.91119 -18.58548 -17.56156 -17.29288 -16.96498 -16.48547 -15.63997 -15.24370 -15.10488 -14.86616 -14.74668 -14.61835 -14.36850 -14.34774 -14.07763 -13.88495 -13.77641 -13.60957 -13.56758 -13.38616 -12.97531 -12.75238 -12.58637 -12.54699 -12.26397 -11.88562 -11.76343 -11.50939 -11.39118 -11.08877 -11.06980 -10.98582 -10.83820 -10.70685 -10.55776 -10.45136 -10.00771 -9.67178 -9.21524 -8.92696 -8.71049 -7.05521 -6.14669 -3.14677 2.40401 2.46257 2.83177 3.45989 3.49737 3.53029 3.62964 3.68980 3.70458 4.17786 4.36468 4.42114 4.51206 4.60629 4.65205 4.81773 4.83806 4.90700 4.96721 5.05178 5.16504 5.17818 5.31374 5.34079 5.49223 5.57892 5.64335 5.71489 5.73166 5.76923 5.85063 5.87680 5.89113 5.89799 6.06809 6.18412 6.24618 6.25420 6.33507 6.59052 6.69951 7.40935 7.76848 8.03236 8.71678 9.18065 10.04450 10.18982 11.33878 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.040305 B = 0.001844 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.540841 B =15184.048212 C =15397.161984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.046 4.046 3 C -0.170 4.170 4 C -0.126 4.126 5 C 0.529 3.471 6 O -0.532 6.532 7 N -0.616 5.616 8 C 0.098 3.902 9 C -0.121 4.121 10 C -0.107 4.107 11 H 0.083 0.917 12 C 0.170 3.830 13 N -0.742 5.742 14 C -0.332 4.332 15 H 0.065 0.935 16 C -0.045 4.045 17 N -0.944 5.944 18 Si 1.080 2.920 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.295 1.295 22 C 0.113 3.887 23 C -0.160 4.160 24 C 0.454 3.546 25 F -0.177 7.177 26 F -0.189 7.189 27 F -0.179 7.179 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.367 0.633 43 H 0.254 0.746 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 5.104 -26.717 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.046 4.046 3 C -0.227 4.227 4 C -0.165 4.165 5 C 0.318 3.682 6 O -0.410 6.410 7 N -0.350 5.350 8 C -0.024 4.024 9 C -0.159 4.159 10 C -0.127 4.127 11 H 0.101 0.899 12 C 0.042 3.958 13 N -0.388 5.388 14 C -0.463 4.463 15 H 0.083 0.917 16 C -0.243 4.243 17 N -0.589 5.589 18 Si 0.911 3.089 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.222 1.222 22 C -0.009 4.009 23 C -0.198 4.198 24 C 0.400 3.600 25 F -0.159 7.159 26 F -0.170 7.170 27 F -0.161 7.161 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.200 0.800 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.175 5.176 -25.302 25.918 hybrid contribution -0.097 0.409 -1.847 1.894 sum 2.078 5.585 -27.149 27.796 Atomic orbital electron populations 1.22470 0.92813 1.01928 1.05248 1.20242 0.97461 0.96150 0.90771 1.22505 1.00171 0.94526 1.05471 1.21644 1.02536 1.00464 0.91897 1.20102 0.80312 0.84507 0.83264 1.90615 1.38230 1.26508 1.85631 1.48598 1.51151 1.29588 1.05678 1.22154 0.94522 0.87850 0.97924 1.22656 0.99144 1.02228 0.91902 1.22589 0.98432 0.96188 0.95475 0.89865 1.20481 0.98138 0.91244 0.85945 1.42309 1.89295 1.03386 1.03790 1.20028 1.47279 0.94990 0.83979 0.91735 1.25787 1.00502 0.92578 1.05414 1.70898 1.52690 1.19729 1.15608 0.83235 0.75849 0.75163 0.74656 1.21023 1.22244 1.22242 1.22237 1.00943 0.96067 0.81671 1.23038 1.03347 1.02245 0.91167 1.20555 0.76731 0.76992 0.85699 1.93144 1.93463 1.32818 1.96465 1.93186 1.85694 1.83924 1.54229 1.93178 1.31518 1.94776 1.96579 0.89249 0.91698 0.92935 0.93216 0.90948 0.89454 0.88609 0.88590 0.91447 0.91446 0.90168 0.89706 0.95929 0.95874 0.80002 0.93485 0.90366 0.91159 0.87213 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 6.89 37.16 0.26 -1.34 16 2 C -0.05 -0.36 0.54 -154.50 -0.08 -0.45 16 3 C -0.17 -1.57 7.35 37.16 0.27 -1.29 16 4 C -0.13 -0.95 3.96 -27.88 -0.11 -1.06 16 5 C 0.53 6.05 7.11 -10.99 -0.08 5.97 16 6 O -0.53 -7.62 11.72 5.56 0.07 -7.56 16 7 N -0.62 -7.15 3.33 -170.48 -0.57 -7.72 16 8 C 0.10 0.96 6.49 -3.03 -0.02 0.94 16 9 C -0.12 -1.54 6.28 -24.87 -0.16 -1.69 16 10 C -0.11 -1.58 3.07 -88.47 -0.27 -1.85 16 11 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 12 C 0.17 3.25 5.70 -4.04 -0.02 3.23 16 13 N -0.74 -18.01 5.49 -59.91 -0.33 -18.34 16 14 C -0.33 -9.22 9.99 -15.06 -0.15 -9.37 16 15 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 16 C -0.05 -1.30 5.50 -17.43 -0.10 -1.40 16 17 N -0.94 -28.63 13.70 55.49 0.76 -27.87 16 18 Si 1.08 25.56 29.92 -169.99 -5.09 20.47 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 C 0.11 1.51 6.38 -2.52 -0.02 1.49 16 23 C -0.16 -0.92 4.51 -26.73 -0.12 -1.04 16 24 C 0.45 3.55 2.96 37.16 0.11 3.66 16 25 F -0.18 -1.58 13.78 2.25 0.03 -1.55 16 26 F -0.19 -1.57 17.32 2.25 0.04 -1.53 16 27 F -0.18 -1.60 13.96 2.25 0.03 -1.57 16 28 H 0.09 1.07 5.37 -51.93 -0.28 0.79 16 29 H 0.06 0.64 6.03 -51.93 -0.31 0.33 16 30 H 0.05 0.44 8.03 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.07 0.70 5.67 -51.93 -0.29 0.40 16 33 H 0.09 1.02 5.35 -51.93 -0.28 0.74 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 42 H 0.37 8.99 6.46 -40.82 -0.26 8.72 16 43 H 0.25 7.52 6.78 -40.82 -0.28 7.24 16 44 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 45 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 46 H 0.11 0.45 8.09 -51.93 -0.42 0.03 16 47 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -32.44 372.13 -7.15 -39.58 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.21 Total: 4.67 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.49 Total: -4.20 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.14 Total: -53.93 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.07 Total: -7.56 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.10 Total: -4.65 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.09 Total: 20.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.44 -7.15 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662716771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.956 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds