Wall clock time and date at job start Sat Apr 11 2020 04:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 C 1.52997 * 109.47085 * 120.00374 * 2 1 3 5 5 C 1.50705 * 109.46955 * 300.00080 * 4 2 1 6 6 O 1.21283 * 119.99881 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99788 * 180.02562 * 5 4 2 8 8 C 1.46923 * 120.63374 * 5.38796 * 7 5 4 9 9 C 1.53194 * 108.77356 * 233.59086 * 8 7 5 10 10 C 1.53041 * 109.31354 * 305.36329 * 9 8 7 11 11 C 1.53037 * 109.53699 * 61.36635 * 10 9 8 12 12 C 1.46930 * 120.62759 * 185.36941 * 7 5 4 13 13 H 1.09002 * 109.58636 * 246.34125 * 12 7 5 14 14 C 1.53001 * 109.58820 * 6.62154 * 12 7 5 15 15 N 1.46490 * 109.47286 * 178.20145 * 14 12 7 16 16 C 1.36942 * 120.00098 * 185.32273 * 15 14 12 17 17 H 1.07996 * 120.00022 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99785 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00647 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99968 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47302 * 119.99773 * 20 18 16 23 23 H 1.48498 * 109.47395 * 239.99989 * 20 18 16 24 24 C 1.53000 * 109.47127 * 239.99974 * 2 1 3 25 25 F 1.39899 * 109.47089 * 300.00175 * 24 2 1 26 26 F 1.39901 * 109.47120 * 59.99956 * 24 2 1 27 27 F 1.39897 * 109.47334 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47167 * 299.99936 * 1 2 3 29 29 H 1.08997 * 109.47343 * 59.99870 * 1 2 3 30 30 H 1.09006 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47028 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47103 * 300.00277 * 3 2 1 33 33 H 1.09000 * 109.47033 * 59.99982 * 3 2 1 34 34 H 1.09002 * 109.47419 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47530 * 59.99917 * 4 2 1 36 36 H 1.09004 * 109.58661 * 353.37421 * 8 7 5 37 37 H 1.08996 * 109.58865 * 113.65798 * 8 7 5 38 38 H 1.09003 * 109.49714 * 65.31732 * 9 8 7 39 39 H 1.08997 * 109.49280 * 185.37999 * 9 8 7 40 40 H 1.09000 * 109.45962 * 181.38988 * 10 9 8 41 41 H 1.09006 * 109.45705 * 301.34829 * 10 9 8 42 42 H 1.09001 * 109.49742 * 178.67996 * 11 10 9 43 43 H 1.09005 * 109.49836 * 58.58717 * 11 10 9 44 44 H 1.09007 * 109.46930 * 58.19879 * 14 12 7 45 45 H 1.09004 * 109.47270 * 298.20249 * 14 12 7 46 46 H 0.96998 * 120.00207 * 5.32161 * 15 14 12 47 47 H 0.96991 * 120.00632 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 8 0.8407 0.9754 2.3684 7 7 1.8636 -0.4712 3.7038 8 6 2.8018 -1.5914 3.8570 9 6 2.1420 -2.6729 4.7183 10 6 1.6795 -2.0551 6.0399 11 6 0.6450 -0.9627 5.7599 12 6 1.2878 0.1381 4.9104 13 1 2.0743 0.6312 5.4817 14 6 0.2251 1.1635 4.5101 15 7 -0.3774 1.7382 5.7153 16 6 -1.4336 2.6032 5.6071 17 1 -1.8225 2.8613 4.6333 18 6 -2.0041 3.1482 6.7492 19 7 -1.5304 2.8332 7.9361 20 14 -3.4443 4.3286 6.6016 21 1 -3.7851 4.5170 5.1685 22 1 -4.6180 3.7698 7.3196 23 1 -3.0753 5.6369 7.1993 24 6 2.0400 -0.7213 -1.2492 25 9 1.5736 -2.0402 -1.2492 26 9 1.5737 -0.0618 -2.3915 27 9 3.4390 -0.7218 -1.2490 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7490 1.2492 36 1 3.0437 -2.0022 2.8767 37 1 3.7133 -1.2411 4.3414 38 1 1.2829 -3.0855 4.1892 39 1 2.8612 -3.4669 4.9193 40 1 1.2318 -2.8278 6.6649 41 1 2.5353 -1.6209 6.5569 42 1 0.2987 -0.5393 6.7028 43 1 -0.2000 -1.3914 5.2211 44 1 -0.5467 0.6739 3.9161 45 1 0.6881 1.9560 3.9221 46 1 -0.0283 1.5061 6.5901 47 1 -1.9294 3.2137 8.7342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673129240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:07 Heat of formation + Delta-G solvation = -171.803492 kcal Electronic energy + Delta-G solvation = -31635.210393 eV Core-core repulsion = 27017.564393 eV Total energy + Delta-G solvation = -4617.646000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.30868 -47.77046 -47.75476 -40.73069 -38.02711 -35.96707 -34.68948 -32.91977 -32.02099 -29.77940 -28.62718 -27.46915 -26.33808 -25.92672 -24.40378 -23.17992 -21.47549 -21.04589 -20.32722 -18.95452 -18.51704 -18.34631 -17.61949 -17.00430 -16.34989 -15.90937 -15.50079 -14.93084 -14.79162 -14.52056 -14.38857 -14.28355 -14.19578 -14.00631 -13.93301 -13.92407 -13.80894 -13.62899 -13.41514 -13.25010 -13.06162 -12.84315 -12.57693 -12.06613 -11.90182 -11.70464 -11.55672 -11.38864 -11.30602 -11.28388 -10.99445 -10.88769 -10.80650 -10.71697 -10.51671 -10.35128 -9.94976 -9.66606 -8.93506 -8.66039 -8.38682 -6.77170 -5.68092 -2.94400 2.49940 2.64584 2.98436 3.48977 3.55067 3.57437 3.61331 3.79947 3.88148 4.39386 4.54189 4.58232 4.67880 4.70616 4.82362 4.84536 4.97951 5.18279 5.20682 5.25240 5.35761 5.38577 5.56633 5.58029 5.64869 5.66587 5.71796 5.75772 5.78827 5.80853 5.97193 5.97598 6.18374 6.21950 6.24332 6.28373 6.33390 6.54599 6.74634 7.06018 7.25288 7.51291 7.82661 8.29089 8.53051 9.62575 10.21642 10.55949 11.55545 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.003540 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.738321 B = 7907.073507 C = 9588.362167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.083 4.083 3 C -0.160 4.160 4 C -0.140 4.140 5 C 0.517 3.483 6 O -0.506 6.506 7 N -0.604 5.604 8 C 0.106 3.894 9 C -0.134 4.134 10 C -0.121 4.121 11 C -0.125 4.125 12 C 0.139 3.861 13 H 0.070 0.930 14 C 0.161 3.839 15 N -0.738 5.738 16 C -0.224 4.224 17 H 0.070 0.930 18 C -0.019 4.019 19 N -0.938 5.938 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.455 3.545 25 F -0.185 7.185 26 F -0.181 7.181 27 F -0.185 7.185 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.029 0.971 45 H 0.052 0.948 46 H 0.378 0.622 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.380 -13.423 -14.832 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.085 4.085 3 C -0.217 4.217 4 C -0.180 4.180 5 C 0.304 3.696 6 O -0.382 6.382 7 N -0.338 5.338 8 C -0.017 4.017 9 C -0.173 4.173 10 C -0.159 4.159 11 C -0.164 4.164 12 C 0.037 3.963 13 H 0.088 0.912 14 C 0.034 3.966 15 N -0.384 5.384 16 C -0.355 4.355 17 H 0.088 0.912 18 C -0.214 4.214 19 N -0.588 5.588 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.400 3.600 25 F -0.166 7.166 26 F -0.162 7.162 27 F -0.166 7.166 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.212 0.788 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.894 -12.809 -15.025 23.050 hybrid contribution -0.441 0.139 0.057 0.466 sum 11.453 -12.670 -14.968 22.710 Atomic orbital electron populations 1.22207 0.90232 1.03272 1.06076 1.21521 0.99973 0.97656 0.89331 1.22196 1.01013 0.92482 1.06033 1.21809 1.03007 1.00869 0.92339 1.20092 0.80856 0.84679 0.83929 1.90720 1.37332 1.25046 1.85111 1.48160 1.45459 1.34237 1.05896 1.21758 0.92144 0.87070 1.00765 1.21919 1.00918 0.97428 0.96999 1.21557 0.99397 0.98504 0.96423 1.21923 0.97696 0.95408 1.01341 1.21623 0.96518 0.93926 0.84262 0.91160 1.21301 0.92394 0.93589 0.89276 1.42565 1.38407 1.54105 1.03302 1.19264 1.06244 1.17333 0.92691 0.91164 1.24691 1.00116 1.01260 0.95297 1.69659 1.43977 1.48500 0.96678 0.86140 0.82396 0.80742 0.77140 1.20595 1.22058 1.22013 1.20715 0.75278 0.77455 0.86507 1.93156 1.88485 1.38115 1.96837 1.93161 1.88459 1.80752 1.53828 1.93153 1.30240 1.96401 1.96841 0.87006 0.91637 0.92183 0.92213 0.91625 0.87091 0.88095 0.87982 0.90080 0.91165 0.91514 0.91009 0.91803 0.91896 0.89487 0.91723 0.95298 0.93048 0.78808 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.93 37.16 0.29 -1.53 16 2 C -0.08 -0.87 0.33 -154.51 -0.05 -0.92 16 3 C -0.16 -1.75 7.93 37.16 0.29 -1.45 16 4 C -0.14 -1.35 2.88 -27.88 -0.08 -1.43 16 5 C 0.52 6.77 6.95 -10.98 -0.08 6.69 16 6 O -0.51 -8.29 6.90 5.55 0.04 -8.25 16 7 N -0.60 -7.67 2.97 -165.21 -0.49 -8.16 16 8 C 0.11 0.94 6.35 -3.71 -0.02 0.92 16 9 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16 10 C -0.12 -1.35 5.88 -26.69 -0.16 -1.51 16 11 C -0.13 -1.90 5.10 -26.61 -0.14 -2.03 16 12 C 0.14 2.25 3.06 -67.60 -0.21 2.04 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.16 3.39 4.14 -4.05 -0.02 3.37 16 15 N -0.74 -18.93 5.27 -59.91 -0.32 -19.25 16 16 C -0.22 -6.43 9.99 -15.06 -0.15 -6.58 16 17 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 19 N -0.94 -28.60 13.06 55.49 0.72 -27.88 16 20 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 C 0.45 4.72 2.22 37.16 0.08 4.80 16 25 F -0.18 -1.94 16.28 2.25 0.04 -1.90 16 26 F -0.18 -2.02 16.28 2.25 0.04 -1.98 16 27 F -0.18 -1.90 16.28 2.25 0.04 -1.87 16 28 H 0.11 1.55 5.51 -51.93 -0.29 1.26 16 29 H 0.06 0.70 7.80 -51.93 -0.41 0.30 16 30 H 0.06 0.63 7.80 -51.93 -0.41 0.22 16 31 H 0.06 0.59 7.80 -51.93 -0.41 0.18 16 32 H 0.06 0.68 7.80 -51.93 -0.41 0.28 16 33 H 0.11 1.46 5.51 -51.93 -0.29 1.18 16 34 H 0.10 0.80 7.38 -51.93 -0.38 0.42 16 35 H 0.10 0.85 7.57 -51.93 -0.39 0.46 16 36 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.53 7.10 -51.93 -0.37 1.16 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.03 0.65 7.24 -51.93 -0.38 0.28 16 45 H 0.05 1.18 6.24 -51.93 -0.32 0.85 16 46 H 0.38 10.00 6.68 -40.82 -0.27 9.72 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -31.53 365.74 -7.05 -38.59 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.12 Total: 6.86 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.48 Total: 0.38 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.08 Total: -55.29 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.04 Total: -8.25 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.11 Total: -5.75 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.53 -7.05 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673129240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.217 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds