Wall clock time and date at job start Sat Apr 11 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 N 1.46500 * 109.44794 * 303.93081 * 3 2 1 5 5 C 1.36936 * 119.99959 * 297.77822 * 4 3 2 6 6 H 1.07997 * 120.00039 * 356.65675 * 5 4 3 7 7 C 1.38814 * 120.00134 * 176.65157 * 5 4 3 8 8 N 1.31618 * 119.99633 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47358 * 60.00006 * 9 7 5 11 11 H 1.48506 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46948 * 299.99672 * 9 7 5 13 13 C 1.53041 * 109.46094 * 63.89405 * 3 2 1 14 14 C 1.53190 * 109.31563 * 181.38719 * 13 3 2 15 15 N 1.46930 * 108.77523 * 305.36409 * 14 13 3 16 16 C 1.34772 * 120.63242 * 233.58622 * 15 14 13 17 17 O 1.21281 * 120.00076 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99917 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47342 * 179.97438 * 18 16 15 20 20 H 1.09008 * 109.46746 * 304.99924 * 19 18 16 21 21 C 1.53002 * 109.47234 * 64.99672 * 19 18 16 22 22 C 1.52994 * 109.47516 * 184.99919 * 19 18 16 23 23 F 1.39902 * 109.47120 * 59.99911 * 22 19 18 24 24 F 1.39900 * 109.47682 * 179.97438 * 22 19 18 25 25 F 1.39897 * 109.47198 * 299.99944 * 22 19 18 26 26 C 1.46925 * 118.73693 * 53.86247 * 15 14 13 27 27 C 1.53043 * 109.46175 * 183.96231 * 3 2 1 28 28 H 1.09001 * 109.47335 * 294.36799 * 1 2 3 29 29 H 1.09000 * 109.46688 * 54.37088 * 1 2 3 30 30 H 1.09003 * 109.47025 * 174.36448 * 1 2 3 31 31 H 1.08996 * 109.47449 * 239.99937 * 2 1 3 32 32 H 1.08998 * 109.47374 * 119.99352 * 2 1 3 33 33 H 0.97009 * 119.99974 * 117.78300 * 4 3 2 34 34 H 0.97006 * 119.99928 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.49724 * 61.43331 * 13 3 2 36 36 H 1.08998 * 109.49964 * 301.33961 * 13 3 2 37 37 H 1.08998 * 109.58752 * 185.57966 * 14 13 3 38 38 H 1.08994 * 109.58867 * 65.14955 * 14 13 3 39 39 H 1.09001 * 109.47449 * 299.99678 * 18 16 15 40 40 H 1.08997 * 109.47415 * 60.00147 * 18 16 15 41 41 H 1.08998 * 109.46843 * 300.00331 * 21 19 18 42 42 H 1.08997 * 109.46903 * 59.99966 * 21 19 18 43 43 H 1.08996 * 109.47087 * 180.02562 * 21 19 18 44 44 H 1.09003 * 109.59082 * 65.92428 * 26 15 14 45 45 H 1.08998 * 109.59099 * 186.35052 * 26 15 14 46 46 H 1.08999 * 109.49761 * 298.56436 * 27 3 2 47 47 H 1.08998 * 109.49513 * 58.63166 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4756 2.1594 -1.1462 5 6 1.7620 1.7471 -2.4202 6 1 2.4466 0.9276 -2.5815 7 6 1.1724 2.3826 -3.5044 8 7 0.3384 3.3816 -3.3078 9 14 1.5626 1.8197 -5.2423 10 1 1.1680 0.3971 -5.4022 11 1 0.8109 2.6546 -6.2135 12 1 3.0195 1.9606 -5.4928 13 6 1.6113 2.1349 1.2958 14 6 2.0937 3.5887 1.2770 15 7 3.5431 3.6029 1.0362 16 6 4.3718 4.2584 1.8729 17 8 3.9229 4.8444 2.8352 18 6 5.8560 4.2642 1.6120 19 6 6.5622 5.0736 2.7015 20 1 6.1261 6.0713 2.7533 21 6 6.3910 4.3716 4.0502 22 6 8.0516 5.1846 2.3699 23 9 8.2082 5.8265 1.1367 24 9 8.6973 5.9252 3.3658 25 9 8.6114 3.9042 2.3035 26 6 4.0712 2.8942 -0.1374 27 6 3.5671 1.4434 -0.0997 28 1 -0.3634 0.4240 0.9361 29 1 -0.3633 0.5987 -0.8353 30 1 -0.3633 -1.0227 -0.1009 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.8990 2.9262 -1.0026 34 1 -0.0734 3.8260 -4.0655 35 1 2.0511 1.6166 2.1479 36 1 0.5246 2.1132 1.3775 37 1 1.8782 4.0576 2.2371 38 1 1.5856 4.1320 0.4804 39 1 6.2302 3.2405 1.6193 40 1 6.0522 4.7159 0.6396 41 1 5.3299 4.2925 4.2865 42 1 6.8270 3.3740 3.9984 43 1 6.8937 4.9484 4.8264 44 1 3.7210 3.3820 -1.0471 45 1 5.1608 2.9047 -0.1110 46 1 3.9885 0.9317 0.7655 47 1 3.8725 0.9291 -1.0109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673610466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:13 Heat of formation + Delta-G solvation = -192.370961 kcal Electronic energy + Delta-G solvation = -31321.176693 eV Core-core repulsion = 26702.638820 eV Total energy + Delta-G solvation = -4618.537873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.28556 -47.76490 -47.74512 -40.25482 -38.30232 -35.30619 -34.75624 -32.66284 -30.95443 -30.37657 -29.17349 -27.99463 -26.45143 -24.91751 -23.84927 -22.92510 -21.83977 -21.25354 -19.45391 -18.76634 -18.50894 -17.99801 -17.72080 -17.09807 -16.39137 -15.89581 -15.53203 -14.87789 -14.72361 -14.57823 -14.19758 -14.18485 -14.04683 -13.92846 -13.91079 -13.88791 -13.73928 -13.61326 -13.17932 -13.03145 -12.90535 -12.46064 -12.31221 -12.16078 -11.70974 -11.50938 -11.47574 -11.43268 -11.28060 -11.12363 -10.90990 -10.79300 -10.68108 -10.37398 -10.29143 -10.09602 -9.69971 -9.60132 -9.44207 -8.95109 -8.28679 -6.99936 -5.82034 -3.10472 2.52620 2.70923 3.15746 3.38586 3.44140 3.45637 3.63987 3.84321 3.88093 4.47534 4.53578 4.65031 4.69159 4.98271 5.18098 5.28002 5.30434 5.32051 5.35719 5.50263 5.53486 5.59102 5.67739 5.70803 5.72547 5.92005 5.94321 6.04723 6.09881 6.10735 6.16941 6.19886 6.38230 6.46121 6.51677 6.61508 6.72781 6.81269 6.91911 7.01506 7.17531 7.65494 7.66356 8.28207 8.36199 9.48079 10.04443 10.40033 11.40096 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.003246 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.035367 B = 8624.524041 C = 9563.887238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.232 4.232 6 H 0.069 0.931 7 C -0.009 4.009 8 N -0.931 5.931 9 Si 0.900 3.100 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.287 1.287 13 C -0.130 4.130 14 C 0.116 3.884 15 N -0.594 5.594 16 C 0.519 3.481 17 O -0.553 6.553 18 C -0.144 4.144 19 C -0.117 4.117 20 H 0.122 0.878 21 C -0.158 4.158 22 C 0.453 3.547 23 F -0.184 7.184 24 F -0.183 7.183 25 F -0.183 7.183 26 C 0.112 3.888 27 C -0.135 4.135 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.542 0.129 12.560 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.110 3.890 4 N -0.354 5.354 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.206 4.206 8 N -0.579 5.579 9 Si 0.731 3.269 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.214 1.214 13 C -0.168 4.168 14 C -0.006 4.006 15 N -0.326 5.326 16 C 0.307 3.693 17 O -0.433 6.433 18 C -0.183 4.183 19 C -0.136 4.136 20 H 0.140 0.860 21 C -0.214 4.214 22 C 0.398 3.602 23 F -0.165 7.165 24 F -0.165 7.165 25 F -0.164 7.164 26 C -0.010 4.010 27 C -0.175 4.175 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.364 0.365 12.870 17.173 hybrid contribution 0.338 -0.173 -1.342 1.395 sum 11.702 0.191 11.528 16.428 Atomic orbital electron populations 1.21668 0.96086 1.00130 1.02013 1.21895 0.96442 0.98042 0.99875 1.19539 0.90765 0.91222 0.87469 1.42464 1.58028 1.34732 1.00217 1.19034 1.21079 1.13155 0.83081 0.91312 1.24674 0.99614 0.98743 0.97532 1.69635 1.33516 1.24846 1.29923 0.86388 0.77521 0.77785 0.85177 1.21422 1.21883 1.21407 1.22112 1.01437 0.95216 0.98043 1.21600 0.79158 0.97478 1.02374 1.48102 1.07599 1.50824 1.26071 1.20077 0.87947 0.78849 0.82468 1.90635 1.77835 1.45251 1.29533 1.21733 0.93918 1.02867 0.99831 1.22170 0.87539 1.05093 0.98839 0.86006 1.21994 1.05956 1.00050 0.93446 1.20685 0.91743 0.73520 0.74203 1.93190 1.96611 1.82133 1.44563 1.93170 1.84161 1.77459 1.61686 1.93168 1.87618 1.39544 1.96096 1.21901 0.97141 0.93525 0.88447 1.22368 0.98780 0.95115 1.01241 0.94263 0.90389 0.94796 0.92219 0.94236 0.78145 0.93527 0.92067 0.90512 0.89891 0.90435 0.87647 0.87656 0.88246 0.91878 0.91584 0.88874 0.91357 0.93260 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.39 37.16 0.35 -2.03 16 2 C -0.12 -2.03 4.78 -26.73 -0.13 -2.16 16 3 C 0.20 3.40 0.43 -131.78 -0.06 3.34 16 4 N -0.71 -14.99 3.06 -47.19 -0.14 -15.13 16 5 C -0.23 -5.58 8.72 -15.06 -0.13 -5.71 16 6 H 0.07 1.63 6.74 -52.49 -0.35 1.27 16 7 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 8 N -0.93 -25.96 13.06 55.49 0.72 -25.24 16 9 Si 0.90 21.04 29.55 -169.99 -5.02 16.02 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 C -0.13 -1.95 4.71 -26.61 -0.13 -2.08 16 14 C 0.12 1.80 6.16 -3.71 -0.02 1.78 16 15 N -0.59 -8.73 2.97 -172.50 -0.51 -9.24 16 16 C 0.52 7.23 7.41 -10.99 -0.08 7.14 16 17 O -0.55 -8.90 13.38 5.56 0.07 -8.82 16 18 C -0.14 -1.54 3.28 -27.88 -0.09 -1.63 16 19 C -0.12 -1.18 2.01 -90.62 -0.18 -1.36 16 20 H 0.12 1.26 7.96 -51.92 -0.41 0.85 16 21 C -0.16 -1.54 8.69 37.16 0.32 -1.21 16 22 C 0.45 4.67 2.69 37.15 0.10 4.77 16 23 F -0.18 -2.04 16.71 2.25 0.04 -2.00 16 24 F -0.18 -1.96 16.80 2.25 0.04 -1.92 16 25 F -0.18 -1.94 16.37 2.25 0.04 -1.90 16 26 C 0.11 1.64 6.11 -3.48 -0.02 1.62 16 27 C -0.13 -2.06 4.69 -26.38 -0.12 -2.18 16 28 H 0.04 0.60 6.79 -51.93 -0.35 0.24 16 29 H 0.08 1.58 7.31 -51.93 -0.38 1.20 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.07 7.60 -51.93 -0.39 0.68 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.38 8.91 6.54 -40.82 -0.27 8.64 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.16 6.60 -51.93 -0.34 0.82 16 37 H 0.08 1.28 7.01 -51.93 -0.36 0.92 16 38 H 0.08 1.35 6.98 -51.93 -0.36 0.99 16 39 H 0.11 1.00 7.51 -51.93 -0.39 0.61 16 40 H 0.11 1.06 7.45 -51.93 -0.39 0.68 16 41 H 0.10 1.15 5.95 -51.93 -0.31 0.84 16 42 H 0.06 0.57 7.80 -51.93 -0.41 0.16 16 43 H 0.07 0.58 7.80 -51.93 -0.41 0.18 16 44 H 0.09 1.66 7.72 -51.93 -0.40 1.26 16 45 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 1.24 7.14 -51.93 -0.37 0.87 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -27.04 369.50 -6.52 -33.56 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.03 Total: 9.18 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.29 Total: -0.06 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.07 Total: -49.62 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.04 -6.52 -33.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673610466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.814 kcal (2) G-P(sol) polarization free energy of solvation -27.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds