Wall clock time and date at job start Sat Apr 11 2020 04:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46916 * 2 1 4 4 N 1.46498 * 109.44700 * 303.92373 * 3 2 1 5 5 C 1.36939 * 120.00460 * 297.78621 * 4 3 2 6 6 H 1.07997 * 119.99609 * 356.65076 * 5 4 3 7 7 C 1.38813 * 119.99931 * 176.65155 * 5 4 3 8 8 N 1.31618 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47274 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47283 * 120.00143 * 9 7 5 12 12 H 1.48507 * 109.47232 * 240.00077 * 9 7 5 13 13 C 1.53038 * 109.46112 * 63.89397 * 3 2 1 14 14 C 1.53190 * 109.30955 * 181.38335 * 13 3 2 15 15 N 1.46928 * 108.77763 * 305.36477 * 14 13 3 16 16 C 1.34779 * 120.63230 * 233.58748 * 15 14 13 17 17 O 1.21280 * 119.99830 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99779 * 0.02562 * 16 15 14 19 19 C 1.53004 * 109.46831 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.46958 * 54.99960 * 19 18 16 21 21 C 1.53000 * 109.46930 * 294.99965 * 19 18 16 22 22 C 1.52993 * 109.46980 * 175.00329 * 19 18 16 23 23 F 1.39902 * 109.47472 * 59.99507 * 22 19 18 24 24 F 1.39901 * 109.47221 * 180.02562 * 22 19 18 25 25 F 1.39902 * 109.46930 * 299.99845 * 22 19 18 26 26 C 1.46926 * 118.73769 * 53.61047 * 15 14 13 27 27 C 1.53045 * 109.45603 * 183.96399 * 3 2 1 28 28 H 1.09004 * 109.47135 * 174.36523 * 1 2 3 29 29 H 1.08995 * 109.47519 * 294.36995 * 1 2 3 30 30 H 1.09001 * 109.46881 * 54.37515 * 1 2 3 31 31 H 1.08998 * 109.47060 * 239.99305 * 2 1 3 32 32 H 1.09003 * 109.46589 * 119.99721 * 2 1 3 33 33 H 0.97002 * 119.99599 * 117.78048 * 4 3 2 34 34 H 0.97001 * 120.00289 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.50090 * 301.33519 * 13 3 2 36 36 H 1.09004 * 109.49595 * 61.43359 * 13 3 2 37 37 H 1.08996 * 109.58786 * 65.15194 * 14 13 3 38 38 H 1.08996 * 109.58568 * 185.57728 * 14 13 3 39 39 H 1.08994 * 109.47406 * 299.99901 * 18 16 15 40 40 H 1.09005 * 109.47082 * 60.00309 * 18 16 15 41 41 H 1.09000 * 109.47187 * 180.02562 * 21 19 18 42 42 H 1.09001 * 109.47295 * 299.99787 * 21 19 18 43 43 H 1.08997 * 109.47463 * 60.00371 * 21 19 18 44 44 H 1.08995 * 109.58891 * 186.60529 * 26 15 14 45 45 H 1.09000 * 109.58919 * 66.17518 * 26 15 14 46 46 H 1.09002 * 109.49866 * 298.56222 * 27 3 2 47 47 H 1.09002 * 109.49666 * 58.62634 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4757 2.1593 -1.1463 5 6 1.7621 1.7470 -2.4203 6 1 2.4467 0.9275 -2.5815 7 6 1.1725 2.3825 -3.5045 8 7 0.3378 3.3809 -3.3079 9 14 1.5637 1.8204 -5.2424 10 1 2.5239 0.6887 -5.1923 11 1 0.3141 1.3808 -5.9136 12 1 2.1648 2.9455 -6.0030 13 6 1.6113 2.1349 1.2957 14 6 2.0938 3.5887 1.2769 15 7 3.5431 3.6029 1.0361 16 6 4.3719 4.2584 1.8728 17 8 5.5664 4.2630 1.6628 18 6 3.8143 4.9856 3.0691 19 6 4.9579 5.6404 3.8465 20 1 5.5321 6.2811 3.1772 21 6 5.8706 4.5554 4.4215 22 6 4.3828 6.4808 4.9883 23 9 3.6458 5.6585 5.8473 24 9 5.4284 7.0801 5.6987 25 9 3.5482 7.4729 4.4625 26 6 4.0718 2.8893 -0.1344 27 6 3.5672 1.4433 -0.0998 28 1 -0.3633 -1.0227 -0.1009 29 1 -0.3634 0.4240 0.9360 30 1 -0.3633 0.5986 -0.8354 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8990 2.9261 -1.0027 34 1 -0.0740 3.8252 -4.0656 35 1 0.5246 2.1133 1.3775 36 1 2.0511 1.6166 2.1479 37 1 1.5857 4.1320 0.4802 38 1 1.8783 4.0577 2.2369 39 1 3.1163 5.7531 2.7350 40 1 3.2942 4.2777 3.7147 41 1 6.6851 5.0219 4.9757 42 1 5.2964 3.9147 5.0908 43 1 6.2804 3.9566 3.6081 44 1 5.1614 2.8968 -0.1056 45 1 3.7250 3.3756 -1.0462 46 1 3.9886 0.9316 0.7655 47 1 3.8725 0.9289 -1.0110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673610467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:17 Heat of formation + Delta-G solvation = -192.306393 kcal Electronic energy + Delta-G solvation = -31289.257589 eV Core-core repulsion = 26670.722516 eV Total energy + Delta-G solvation = -4618.535073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.30536 -47.78348 -47.76675 -40.26108 -38.31704 -35.31335 -34.77310 -32.62970 -31.12775 -30.15031 -29.28456 -28.03674 -26.47485 -24.86855 -23.83192 -22.92096 -22.08330 -21.03782 -19.49109 -18.79726 -18.53421 -18.01006 -17.73675 -17.09593 -16.39951 -15.91723 -15.52053 -14.88887 -14.72847 -14.59503 -14.21047 -14.20447 -14.09690 -13.93393 -13.92424 -13.90091 -13.81591 -13.46005 -13.20094 -13.16898 -12.85367 -12.52411 -12.30957 -12.02208 -11.80729 -11.56145 -11.47219 -11.43667 -11.30952 -11.15684 -10.92400 -10.80201 -10.64459 -10.36989 -10.24132 -9.98580 -9.73752 -9.63351 -9.44034 -8.94437 -8.28492 -6.99103 -5.81969 -3.09878 2.50872 2.70947 3.15263 3.39382 3.46185 3.47905 3.62181 3.82310 3.86277 4.44990 4.54560 4.62926 4.66538 4.94854 5.07878 5.23960 5.28001 5.31837 5.34231 5.51116 5.53324 5.59302 5.64337 5.69662 5.78484 5.87252 5.93901 6.00273 6.07795 6.11889 6.15540 6.24166 6.35789 6.46799 6.56507 6.63513 6.75796 6.83039 6.90351 7.03913 7.16365 7.65704 7.69016 8.28892 8.36496 9.48724 10.04200 10.39698 11.40449 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.002965 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.022191 B = 9442.194035 C = 9780.319448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.132 4.132 14 C 0.107 3.893 15 N -0.595 5.595 16 C 0.518 3.482 17 O -0.550 6.550 18 C -0.144 4.144 19 C -0.117 4.117 20 H 0.122 0.878 21 C -0.158 4.158 22 C 0.453 3.547 23 F -0.183 7.183 24 F -0.183 7.183 25 F -0.184 7.184 26 C 0.121 3.879 27 C -0.133 4.133 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 2.215 16.963 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.110 3.890 4 N -0.354 5.354 5 C -0.360 4.360 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.731 3.269 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.221 1.221 13 C -0.170 4.170 14 C -0.016 4.016 15 N -0.326 5.326 16 C 0.306 3.694 17 O -0.430 6.430 18 C -0.184 4.184 19 C -0.137 4.137 20 H 0.140 0.860 21 C -0.215 4.215 22 C 0.399 3.601 23 F -0.164 7.164 24 F -0.165 7.165 25 F -0.165 7.165 26 C 0.000 4.000 27 C -0.174 4.174 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.218 0.782 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.171 2.151 16.703 17.936 hybrid contribution -0.350 0.096 -0.850 0.924 sum 5.821 2.247 15.853 17.036 Atomic orbital electron populations 1.21669 0.96084 1.00156 1.01959 1.21901 0.96380 0.98061 0.99954 1.19542 0.90974 0.91185 0.87269 1.42454 1.57966 1.34735 1.00280 1.19127 1.20805 1.13040 0.83044 0.91205 1.24664 0.99665 0.98776 0.97550 1.69646 1.33692 1.25026 1.29662 0.86237 0.77344 0.77732 0.85587 1.20658 1.22057 1.22058 1.22122 1.01519 0.94919 0.98443 1.21809 0.79992 0.98195 1.01607 1.48103 1.07366 1.50784 1.26361 1.20073 0.86519 0.79336 0.83521 1.90643 1.15139 1.62660 1.74513 1.21745 0.98218 1.01644 0.96796 1.22169 0.98449 0.98910 0.94125 0.85982 1.21997 0.98928 0.97828 1.02718 1.20688 0.76046 0.79169 0.84240 1.93168 1.78250 1.72139 1.72889 1.93172 1.57866 1.84835 1.80578 1.93188 1.73128 1.63934 1.86263 1.21603 0.98487 0.92477 0.87454 1.22287 0.98310 0.95577 1.01177 0.94791 0.94297 0.90380 0.92183 0.94222 0.78224 0.93665 0.90341 0.91905 0.89916 0.90767 0.87700 0.87684 0.91572 0.91885 0.88217 0.90492 0.89417 0.93438 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.39 37.16 0.35 -1.98 16 2 C -0.12 -2.03 4.78 -26.73 -0.13 -2.16 16 3 C 0.20 3.40 0.43 -131.78 -0.06 3.34 16 4 N -0.71 -14.98 3.07 -47.19 -0.14 -15.12 16 5 C -0.23 -5.58 8.72 -15.06 -0.13 -5.71 16 6 H 0.07 1.70 6.73 -52.49 -0.35 1.35 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 8 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 9 Si 0.90 21.35 29.55 -169.99 -5.02 16.33 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C -0.13 -1.82 4.72 -26.61 -0.13 -1.94 16 14 C 0.11 1.42 6.07 -3.71 -0.02 1.40 16 15 N -0.59 -8.72 2.97 -172.77 -0.51 -9.23 16 16 C 0.52 7.20 7.42 -10.98 -0.08 7.12 16 17 O -0.55 -9.05 13.38 5.56 0.07 -8.98 16 18 C -0.14 -1.48 3.28 -27.88 -0.09 -1.57 16 19 C -0.12 -1.16 2.01 -90.62 -0.18 -1.34 16 20 H 0.12 1.25 7.96 -51.93 -0.41 0.84 16 21 C -0.16 -1.53 8.69 37.16 0.32 -1.20 16 22 C 0.45 4.52 2.69 37.15 0.10 4.62 16 23 F -0.18 -1.86 16.37 2.25 0.04 -1.82 16 24 F -0.18 -1.92 16.80 2.25 0.04 -1.88 16 25 F -0.18 -1.96 16.71 2.25 0.04 -1.92 16 26 C 0.12 2.05 6.17 -3.71 -0.02 2.02 16 27 C -0.13 -2.20 4.67 -26.61 -0.12 -2.32 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.57 6.79 -51.93 -0.35 0.21 16 30 H 0.08 1.56 7.31 -51.93 -0.38 1.18 16 31 H 0.06 1.09 7.60 -51.93 -0.39 0.70 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.38 8.73 6.54 -40.82 -0.27 8.46 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.08 1.07 6.60 -51.93 -0.34 0.73 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.27 6.98 -51.93 -0.36 0.91 16 38 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 39 H 0.10 0.98 7.46 -51.93 -0.39 0.60 16 40 H 0.10 0.92 7.50 -51.93 -0.39 0.54 16 41 H 0.07 0.58 7.80 -51.93 -0.41 0.17 16 42 H 0.06 0.56 7.80 -51.93 -0.41 0.15 16 43 H 0.10 1.16 5.95 -51.93 -0.31 0.85 16 44 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 45 H 0.09 1.74 7.72 -51.93 -0.40 1.34 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.34 7.14 -51.93 -0.37 0.96 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -27.53 369.47 -6.52 -34.06 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.03 Total: 8.41 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.29 Total: -0.11 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.07 Total: -49.64 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.11 Total: -5.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.53 -6.52 -34.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673610467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.248 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds