Wall clock time and date at job start Sat Apr 11 2020 04:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00108 * 2 1 4 4 H 1.08001 * 120.00312 * 207.13071 * 3 2 1 5 5 C 1.38816 * 120.00188 * 27.13583 * 3 2 1 6 6 N 1.31616 * 119.99759 * 8.29085 * 5 3 2 7 7 Si 1.86799 * 120.00298 * 188.29490 * 5 3 2 8 8 H 1.48500 * 109.46826 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47395 * 119.99812 * 7 5 3 10 10 H 1.48500 * 109.46961 * 240.00034 * 7 5 3 11 11 C 1.46498 * 119.99848 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45971 * 299.99491 * 11 2 1 13 13 C 1.53197 * 109.31604 * 181.38759 * 12 11 2 14 14 N 1.46929 * 108.88866 * 305.29850 * 13 12 11 15 15 C 1.34784 * 120.62481 * 233.67654 * 14 13 12 16 16 O 1.21275 * 119.99906 * 356.36185 * 15 14 13 17 17 C 1.50695 * 119.99563 * 176.35697 * 15 14 13 18 18 C 1.52999 * 109.47895 * 300.11543 * 17 15 14 19 19 C 1.53003 * 109.47012 * 60.11623 * 17 15 14 20 20 C 1.53003 * 109.47234 * 180.11259 * 17 15 14 21 21 C 1.52994 * 109.47331 * 185.04517 * 20 17 15 22 22 F 1.39901 * 109.47380 * 66.64222 * 21 20 17 23 23 F 1.39908 * 109.47168 * 186.63942 * 21 20 17 24 24 F 1.39898 * 109.47335 * 306.63683 * 21 20 17 25 25 C 1.47201 * 118.56089 * 53.53520 * 14 13 12 26 26 C 1.53039 * 109.46275 * 60.06448 * 11 2 1 27 27 H 1.09004 * 109.47040 * 274.19059 * 1 2 3 28 28 H 1.09000 * 109.47263 * 34.18914 * 1 2 3 29 29 H 1.08994 * 109.47354 * 154.19098 * 1 2 3 30 30 H 0.96998 * 120.00414 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.44907 * 180.02562 * 11 2 1 32 32 H 1.09005 * 109.49680 * 61.43506 * 12 11 2 33 33 H 1.08995 * 109.52854 * 301.35469 * 12 11 2 34 34 H 1.08999 * 109.58071 * 65.15163 * 13 12 11 35 35 H 1.08992 * 109.58956 * 185.43902 * 13 12 11 36 36 H 1.09006 * 109.46854 * 41.67598 * 18 17 15 37 37 H 1.08993 * 109.47570 * 161.67598 * 18 17 15 38 38 H 1.09004 * 109.46919 * 281.68357 * 18 17 15 39 39 H 1.09002 * 109.46806 * 78.52882 * 19 17 15 40 40 H 1.09001 * 109.47351 * 198.52100 * 19 17 15 41 41 H 1.08995 * 109.47268 * 318.52974 * 19 17 15 42 42 H 1.09001 * 109.47171 * 305.04734 * 20 17 15 43 43 H 1.09007 * 109.46292 * 65.04405 * 20 17 15 44 44 H 1.08993 * 109.53487 * 186.67028 * 25 14 13 45 45 H 1.09003 * 109.67586 * 66.36682 * 25 14 13 46 46 H 1.09005 * 109.49844 * 298.56567 * 26 11 2 47 47 H 1.09003 * 109.49463 * 58.63290 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1406 1.2374 -0.4265 5 6 1.5703 2.3219 0.5483 6 7 0.4374 2.2280 1.2117 7 14 2.3982 3.9840 0.3445 8 1 3.6511 3.8204 -0.4358 9 1 1.4841 4.9076 -0.3740 10 1 2.7181 4.5449 1.6817 11 6 2.1975 -1.2687 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6212 -3.3818 1.2625 14 7 2.3854 -4.0940 -0.0008 15 6 1.9584 -5.3724 0.0011 16 8 1.8286 -5.9668 1.0502 17 6 1.6424 -6.0631 -1.3005 18 6 0.5313 -5.3012 -2.0257 19 6 2.8953 -6.0953 -2.1781 20 6 1.1798 -7.4941 -1.0193 21 6 0.9795 -8.2348 -2.3430 22 9 2.2156 -8.3982 -2.9776 23 9 0.4137 -9.4899 -2.0941 24 9 0.1262 -7.4938 -3.1676 25 6 2.6224 -3.3800 -1.2661 26 6 1.8288 -2.0698 -1.2514 27 1 -0.3633 0.0751 1.0250 28 1 -0.3634 0.8501 -0.5775 29 1 -0.3634 -0.9251 -0.4474 30 1 0.0323 3.0218 1.5946 31 1 3.2691 -1.0692 0.0000 32 1 0.7603 -2.2927 1.2364 33 1 2.0685 -1.4911 2.1393 34 1 3.6842 -3.1640 1.3662 35 1 2.2917 -3.9999 2.0975 36 1 0.7103 -4.2293 -1.9403 37 1 0.5228 -5.5854 -3.0779 38 1 -0.4307 -5.5459 -1.5753 39 1 3.5588 -6.8892 -1.8350 40 1 2.6093 -6.2829 -3.2130 41 1 3.4104 -5.1371 -2.1113 42 1 1.9341 -8.0097 -0.4250 43 1 0.2384 -7.4703 -0.4702 44 1 2.2919 -3.9981 -2.1008 45 1 3.6853 -3.1623 -1.3711 46 1 0.7615 -2.2910 -1.2403 47 1 2.0705 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676074709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:20 Heat of formation + Delta-G solvation = -153.651375 kcal Electronic energy + Delta-G solvation = -31583.469646 eV Core-core repulsion = 26966.610780 eV Total energy + Delta-G solvation = -4616.858866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.41817 -47.88166 -47.85291 -40.82480 -37.77494 -36.27197 -35.12265 -32.24442 -31.12903 -29.88903 -29.28897 -27.70354 -26.03657 -25.51707 -24.14911 -23.13063 -22.65002 -21.33274 -19.82617 -18.88256 -18.82019 -18.25400 -17.18340 -16.82712 -16.49927 -16.05430 -15.38025 -15.06427 -15.03514 -14.81473 -14.53559 -14.38064 -14.28585 -14.05396 -13.96544 -13.88688 -13.74871 -13.55087 -13.31208 -12.96483 -12.60087 -12.35117 -12.24782 -12.11011 -11.99944 -11.85908 -11.74789 -11.48095 -11.32968 -11.01755 -10.96214 -10.88035 -10.79340 -10.41828 -10.24523 -10.13929 -9.91217 -9.68787 -9.52986 -8.61838 -8.51831 -6.72755 -5.75070 -3.26043 2.45542 2.56335 2.98928 3.34448 3.41815 3.43423 3.57676 3.69999 3.81811 4.23333 4.43365 4.45131 4.48912 4.70614 4.99012 5.11752 5.15531 5.26393 5.29603 5.33201 5.37224 5.46295 5.49879 5.54681 5.57016 5.58462 5.74179 5.83947 5.86904 5.93784 6.02602 6.12170 6.23343 6.32650 6.49291 6.55845 6.75985 6.94398 6.97485 7.34868 7.43653 7.73297 7.77655 8.11743 8.39706 9.21630 9.83834 10.35144 11.28950 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.002659 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.633613 B =10526.568821 C =10708.401506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.257 4.257 4 H 0.066 0.934 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.180 3.820 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.598 5.598 15 C 0.531 3.469 16 O -0.548 6.548 17 C -0.081 4.081 18 C -0.171 4.171 19 C -0.168 4.168 20 C -0.143 4.143 21 C 0.454 3.546 22 F -0.182 7.182 23 F -0.185 7.185 24 F -0.179 7.179 25 C 0.088 3.912 26 C -0.150 4.150 27 H 0.029 0.971 28 H 0.038 0.962 29 H -0.003 1.003 30 H 0.252 0.748 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 -19.577 -8.045 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.317 5.317 3 C -0.387 4.387 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.009 4.009 14 N -0.330 5.330 15 C 0.318 3.682 16 O -0.426 6.426 17 C -0.085 4.085 18 C -0.228 4.228 19 C -0.225 4.225 20 C -0.181 4.181 21 C 0.400 3.600 22 F -0.163 7.163 23 F -0.167 7.167 24 F -0.160 7.160 25 C -0.034 4.034 26 C -0.190 4.190 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.491 -19.720 -7.438 21.222 hybrid contribution 0.228 0.939 -0.185 0.984 sum 2.719 -18.781 -7.622 20.450 Atomic orbital electron populations 1.20738 0.82919 0.95245 0.99196 1.43905 1.01669 1.00137 1.85943 1.19226 1.00736 0.86410 1.32303 0.91577 1.25146 0.97752 0.98800 0.97670 1.70043 1.19217 1.27842 1.37891 0.86203 0.78819 0.84289 0.77330 1.20306 1.21669 1.21696 1.20288 0.96043 0.86104 0.90469 1.22502 0.99923 0.94335 1.01652 1.21731 0.99961 0.93767 0.85469 1.48106 1.65287 1.11405 1.08231 1.20033 0.76601 0.81691 0.89892 1.90680 1.53796 1.64841 1.33278 1.20660 0.98640 0.93764 0.95411 1.22625 0.96931 1.01793 1.01476 1.22568 0.95928 1.04400 0.99620 1.22766 1.07527 0.95465 0.92373 1.20571 0.73820 0.77707 0.87887 1.93182 1.43096 1.95616 1.84420 1.93192 1.85414 1.43771 1.94316 1.93159 1.71513 1.75994 1.75333 1.22435 1.00597 0.94546 0.85848 1.22534 1.00127 0.94723 1.01612 0.95269 0.94293 0.98470 0.93789 0.91914 0.92266 0.90548 0.91654 0.89674 0.89887 0.89796 0.91474 0.91221 0.90625 0.89995 0.86482 0.86618 0.88337 0.91161 0.91764 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 8.04 59.85 0.48 4.36 16 2 N -0.60 -14.05 2.80 -173.44 -0.49 -14.53 16 3 C -0.26 -6.77 9.54 -15.06 -0.14 -6.91 16 4 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 5 C 0.01 0.14 5.18 -17.43 -0.09 0.05 16 6 N -0.91 -25.85 10.72 55.49 0.59 -25.25 16 7 Si 0.90 21.31 29.56 -169.99 -5.03 16.29 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.18 3.33 2.55 -67.89 -0.17 3.16 16 12 C -0.14 -2.50 5.34 -26.61 -0.14 -2.64 16 13 C 0.11 1.64 6.41 -3.71 -0.02 1.62 16 14 N -0.60 -7.85 2.96 -172.55 -0.51 -8.36 16 15 C 0.53 6.99 6.48 -10.98 -0.07 6.92 16 16 O -0.55 -8.86 15.34 5.56 0.09 -8.77 16 17 C -0.08 -0.81 0.52 -155.66 -0.08 -0.89 16 18 C -0.17 -1.62 6.81 37.16 0.25 -1.37 16 19 C -0.17 -1.41 6.52 37.16 0.24 -1.17 16 20 C -0.14 -1.31 3.76 -26.73 -0.10 -1.41 16 21 C 0.45 4.08 2.97 37.15 0.11 4.19 16 22 F -0.18 -1.65 14.14 2.25 0.03 -1.62 16 23 F -0.19 -1.81 17.32 2.25 0.04 -1.77 16 24 F -0.18 -1.66 13.79 2.25 0.03 -1.63 16 25 C 0.09 1.02 3.75 -3.56 -0.01 1.00 16 26 C -0.15 -2.22 5.04 -26.61 -0.13 -2.36 16 27 H 0.03 0.76 7.32 -51.93 -0.38 0.38 16 28 H 0.04 1.00 7.43 -51.93 -0.39 0.61 16 29 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.06 1.18 7.89 -51.93 -0.41 0.77 16 32 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.30 7.02 -51.93 -0.36 0.93 16 36 H 0.08 0.85 4.13 -51.93 -0.21 0.64 16 37 H 0.08 0.70 5.78 -51.93 -0.30 0.40 16 38 H 0.07 0.65 7.94 -51.93 -0.41 0.23 16 39 H 0.07 0.57 7.49 -51.93 -0.39 0.18 16 40 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 41 H 0.08 0.67 4.83 -51.93 -0.25 0.42 16 42 H 0.12 1.05 7.95 -51.93 -0.41 0.64 16 43 H 0.12 1.05 8.04 -51.93 -0.42 0.63 16 44 H 0.10 0.93 3.12 -51.93 -0.16 0.77 16 45 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 46 H 0.06 1.00 5.92 -51.93 -0.31 0.69 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -29.92 355.16 -6.49 -36.41 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.72 Total: -0.67 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.11 Total: 4.56 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.40 Total: -48.14 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.10 Total: -5.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.92 -6.49 -36.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676074709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.241 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds