Wall clock time and date at job start Sat Apr 11 2020 04:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.46976 * 2 1 4 4 C 1.38286 * 119.97200 * 270.02023 * 3 2 1 5 5 C 1.38252 * 120.11056 * 180.02562 * 4 3 2 6 6 C 1.38167 * 120.05188 * 359.67837 * 5 4 3 7 7 C 1.38711 * 119.94501 * 0.57659 * 6 5 4 8 8 O 1.35898 * 120.05459 * 179.71684 * 7 6 5 9 9 C 1.42906 * 116.99922 * 359.73197 * 8 7 6 10 10 C 1.50708 * 109.46712 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00423 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99399 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00474 * 359.97438 * 12 10 9 14 14 C 1.46504 * 119.99567 * 179.97438 * 12 10 9 15 15 C 1.53005 * 109.47028 * 269.99510 * 14 12 10 16 16 H 1.09005 * 109.47310 * 305.00257 * 15 14 12 17 17 O 1.42901 * 109.47056 * 65.00195 * 15 14 12 18 18 C 1.52992 * 109.47277 * 185.00044 * 15 14 12 19 19 N 1.46499 * 109.47267 * 180.02562 * 18 15 14 20 20 C 1.36935 * 119.99938 * 179.97438 * 19 18 15 21 21 H 1.08000 * 120.00518 * 359.72965 * 20 19 18 22 22 C 1.38817 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99869 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47361 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46860 * 120.00310 * 24 22 20 27 27 H 1.48500 * 109.47264 * 240.00123 * 24 22 20 28 28 C 1.38129 * 119.97239 * 90.00250 * 3 2 1 29 29 H 1.08993 * 109.47157 * 60.00013 * 1 2 3 30 30 H 1.09003 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46801 * 299.99657 * 1 2 3 32 32 H 1.09003 * 109.47282 * 240.00187 * 2 1 3 33 33 H 1.09005 * 109.47307 * 120.00332 * 2 1 3 34 34 H 1.07998 * 119.94567 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.97299 * 179.97438 * 5 4 3 36 36 H 1.08003 * 120.02590 * 180.30089 * 6 5 4 37 37 H 1.08994 * 109.47515 * 59.99742 * 9 8 7 38 38 H 1.08993 * 109.46847 * 299.99349 * 9 8 7 39 39 H 1.08997 * 109.47032 * 270.00001 * 13 12 10 40 40 H 1.08997 * 109.46896 * 30.00104 * 13 12 10 41 41 H 1.08998 * 109.46684 * 150.00329 * 13 12 10 42 42 H 1.09005 * 109.47213 * 150.00096 * 14 12 10 43 43 H 1.08996 * 109.47319 * 29.99428 * 14 12 10 44 44 H 0.96700 * 113.99645 * 59.99638 * 17 15 14 45 45 H 1.09004 * 109.47330 * 60.00123 * 18 15 14 46 46 H 1.09005 * 109.47124 * 300.00327 * 18 15 14 47 47 H 0.96999 * 119.99984 * 359.97438 * 19 18 15 48 48 H 0.96996 * 119.99743 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.02185 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7235 3.3756 -1.2013 6 6 2.9496 4.0325 -0.0070 7 6 2.7249 3.3795 1.1959 8 8 2.9521 4.0216 2.3718 9 6 3.4277 5.3670 2.2949 10 6 3.6199 5.9121 3.6868 11 8 3.3735 5.2171 4.6497 12 7 4.0648 7.1723 3.8614 13 6 4.3621 8.0120 2.6983 14 6 4.2512 7.7023 5.2144 15 6 2.9558 8.3673 5.6845 16 1 2.6513 9.1226 4.9599 17 8 1.9295 7.3801 5.8033 18 6 3.1867 9.0291 7.0444 19 7 1.9463 9.6652 7.4948 20 6 1.9112 10.3241 8.6947 21 1 2.7968 10.3711 9.3111 22 6 0.7360 10.9274 9.1213 23 7 -0.3447 10.8656 8.3726 24 14 0.6881 11.8255 10.7585 25 1 2.0234 11.7502 11.4038 26 1 0.3277 13.2483 10.5321 27 1 -0.3250 11.1927 11.6408 28 6 2.2624 2.0714 1.1966 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0810 1.5621 -2.1324 35 1 2.9026 3.8821 -2.1381 36 1 3.3054 5.0523 -0.0102 37 1 2.7004 5.9797 1.7624 38 1 4.3784 5.3863 1.7623 39 1 5.4048 7.8781 2.4105 40 1 3.7163 7.7250 1.8684 41 1 4.1863 9.0577 2.9508 42 1 5.0558 8.4377 5.2089 43 1 4.5079 6.8878 5.8916 44 1 2.1332 6.6749 6.4329 45 1 3.9695 9.7822 6.9539 46 1 3.4912 8.2738 7.7691 47 1 1.1498 9.6197 6.9431 48 1 -1.1660 11.2868 8.6709 49 1 2.0828 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677134435.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:24 Heat of formation + Delta-G solvation = -85.387207 kcal Electronic energy + Delta-G solvation = -28343.272774 eV Core-core repulsion = 24271.230806 eV Total energy + Delta-G solvation = -4072.041969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73498 -39.80350 -38.04993 -37.11258 -35.35909 -34.14991 -33.95314 -31.45021 -31.04722 -29.89559 -29.42748 -28.13741 -27.02186 -25.14423 -24.20007 -22.83958 -22.69911 -21.28076 -21.03479 -19.46080 -18.36123 -17.15176 -17.10214 -16.78013 -16.67826 -16.21365 -16.04682 -15.55344 -15.03877 -14.99482 -14.67892 -14.39801 -14.26326 -13.84158 -13.70615 -13.55416 -13.45391 -13.16503 -12.97636 -12.95829 -12.64837 -12.42868 -12.35940 -12.15582 -12.11892 -11.74697 -11.50892 -11.34238 -11.26905 -11.04657 -10.91439 -10.82000 -10.64659 -10.10532 -9.93442 -9.75245 -9.59058 -9.12109 -8.88261 -8.58338 -8.47882 -6.89765 -5.72894 -3.02322 1.00003 1.15742 2.29478 2.50234 3.28152 3.44226 3.44850 3.49895 3.52642 4.18024 4.38668 4.49296 4.57796 4.58611 4.68948 4.72285 4.78435 4.85472 4.87212 4.96667 4.98437 5.01983 5.12134 5.18439 5.24459 5.30060 5.31394 5.41421 5.54648 5.56250 5.60539 5.65183 5.72282 5.75309 5.87591 5.99575 6.00835 6.11027 6.22597 6.29537 6.36153 6.46167 6.53221 6.74719 7.05969 7.20847 7.71144 8.05101 8.22956 8.45488 9.56738 10.15073 10.50797 11.49559 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.001861 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.058389 B =15042.915313 C =15852.625506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.043 4.043 4 C -0.159 4.159 5 C -0.077 4.077 6 C -0.217 4.217 7 C 0.135 3.865 8 O -0.288 6.288 9 C 0.045 3.955 10 C 0.521 3.479 11 O -0.507 6.507 12 N -0.608 5.608 13 C 0.073 3.927 14 C 0.087 3.913 15 C 0.085 3.915 16 H 0.095 0.905 17 O -0.547 6.547 18 C 0.126 3.874 19 N -0.725 5.725 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.929 5.929 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.147 4.147 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.375 0.625 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.389 0.611 48 H 0.255 0.745 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 -17.179 -24.146 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.043 4.043 4 C -0.177 4.177 5 C -0.095 4.095 6 C -0.236 4.236 7 C 0.090 3.910 8 O -0.200 6.200 9 C -0.033 4.033 10 C 0.306 3.694 11 O -0.381 6.381 12 N -0.343 5.343 13 C -0.071 4.071 14 C -0.036 4.036 15 C 0.024 3.976 16 H 0.113 0.887 17 O -0.352 6.352 18 C -0.003 4.003 19 N -0.370 5.370 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.166 4.166 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.222 0.778 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.223 0.777 48 H 0.064 0.936 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.209 -17.185 -23.701 31.004 hybrid contribution 0.085 0.683 0.858 1.100 sum 10.294 -16.501 -22.843 30.002 Atomic orbital electron populations 1.21754 0.94385 1.01885 1.02509 1.20574 0.96456 0.92176 1.03096 1.19699 0.96426 0.96016 0.92185 1.20928 1.03813 0.95413 0.97523 1.20908 0.96787 0.94462 0.97317 1.21241 1.08898 1.01147 0.92277 1.19044 0.95265 0.92274 0.84434 1.86174 1.80516 1.25697 1.27610 1.22516 1.00833 0.83172 0.96824 1.19821 0.77669 0.81728 0.90137 1.90725 1.48022 1.57574 1.41748 1.47585 1.66712 1.12506 1.07513 1.21890 1.00752 0.96474 0.87947 1.22316 0.98983 0.99657 0.82655 1.22493 0.87002 0.90306 0.97761 0.88723 1.86550 1.43788 1.38430 1.66389 1.21232 0.91410 0.95213 0.92481 1.42246 1.08324 1.63851 1.22568 1.19271 0.96179 1.26029 0.95847 0.91207 1.24773 0.95854 1.01605 0.98786 1.69695 1.00999 1.49177 1.37897 0.86110 0.77270 0.79220 0.83527 1.20577 1.21876 1.21838 1.20315 1.04752 0.92627 0.98860 0.92498 0.92245 0.92236 0.90798 0.90710 0.86018 0.85752 0.85560 0.88984 0.89287 0.92240 0.91269 0.90143 0.89346 0.89286 0.77754 0.95785 0.96145 0.77659 0.93555 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.09 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.04 -0.37 5.13 -104.65 -0.54 -0.91 16 4 C -0.16 -1.24 9.70 -39.56 -0.38 -1.63 16 5 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 6 C -0.22 -1.93 9.04 -39.43 -0.36 -2.28 16 7 C 0.14 1.52 6.69 -39.22 -0.26 1.26 16 8 O -0.29 -3.78 9.67 -39.33 -0.38 -4.17 16 9 C 0.05 0.46 3.77 36.01 0.14 0.60 16 10 C 0.52 7.04 7.38 -10.98 -0.08 6.96 16 11 O -0.51 -8.98 15.06 -19.91 -0.30 -9.28 16 12 N -0.61 -6.93 2.86 -181.56 -0.52 -7.44 16 13 C 0.07 0.51 10.24 59.85 0.61 1.13 16 14 C 0.09 1.10 5.11 -4.04 -0.02 1.08 16 15 C 0.09 1.42 3.30 -26.73 -0.09 1.33 16 16 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 17 O -0.55 -10.59 11.95 -43.00 -0.51 -11.10 16 18 C 0.13 2.51 5.92 -4.05 -0.02 2.49 16 19 N -0.73 -19.01 5.49 -59.91 -0.33 -19.34 16 20 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 24 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 C -0.15 -1.55 9.64 -39.43 -0.38 -1.93 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16 37 H 0.09 0.78 6.91 -51.93 -0.36 0.42 16 38 H 0.09 0.64 7.64 -51.93 -0.40 0.25 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.38 6.44 -51.93 -0.33 0.04 16 41 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 42 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 43 H 0.09 1.22 7.42 -51.93 -0.39 0.83 16 44 H 0.37 6.88 8.75 45.56 0.40 7.28 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.39 11.03 7.54 -40.82 -0.31 10.73 16 48 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 406.98 15.07 6.13 6.13 Total: -1.00 -36.70 406.98 -9.20 -45.90 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.17 Total: 11.61 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.83 Total: -1.80 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.12 Total: -55.12 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.19 Total: -24.55 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.70 -9.20 -45.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677134435.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.485 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds