Wall clock time and date at job start Sat Apr 11 2020 04:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.47174 * 2 1 4 4 C 1.38294 * 119.96962 * 270.02426 * 3 2 1 5 5 C 1.38244 * 120.10782 * 180.02562 * 4 3 2 6 6 C 1.38169 * 120.05762 * 359.67110 * 5 4 3 7 7 C 1.38715 * 119.94084 * 0.58462 * 6 5 4 8 8 O 1.35899 * 120.05131 * 179.71994 * 7 6 5 9 9 C 1.42899 * 117.00476 * 359.71910 * 8 7 6 10 10 C 1.50698 * 109.47426 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99566 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00209 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99905 * 0.02562 * 12 10 9 14 14 C 1.46498 * 120.00184 * 180.02562 * 12 10 9 15 15 C 1.52995 * 109.47361 * 270.00366 * 14 12 10 16 16 H 1.09000 * 109.47530 * 59.99400 * 15 14 12 17 17 O 1.42910 * 109.46854 * 299.99888 * 15 14 12 18 18 C 1.53001 * 109.47416 * 180.02562 * 15 14 12 19 19 N 1.46493 * 109.47086 * 184.99500 * 18 15 14 20 20 C 1.36945 * 119.99892 * 179.97438 * 19 18 15 21 21 H 1.08000 * 119.99422 * 359.72792 * 20 19 18 22 22 C 1.38811 * 120.00031 * 179.72716 * 20 19 18 23 23 N 1.31616 * 119.99707 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99774 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00042 * 24 22 20 27 27 H 1.48499 * 109.47134 * 329.99663 * 24 22 20 28 28 C 1.38115 * 119.97404 * 90.00159 * 3 2 1 29 29 H 1.08998 * 109.47011 * 299.99875 * 1 2 3 30 30 H 1.08997 * 109.47252 * 60.00010 * 1 2 3 31 31 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46881 * 239.99585 * 2 1 3 33 33 H 1.08999 * 109.46559 * 120.00263 * 2 1 3 34 34 H 1.08001 * 119.94297 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.96821 * 179.97438 * 5 4 3 36 36 H 1.08004 * 120.02865 * 180.29714 * 6 5 4 37 37 H 1.09004 * 109.46815 * 59.99825 * 9 8 7 38 38 H 1.08998 * 109.46920 * 300.00472 * 9 8 7 39 39 H 1.09004 * 109.47207 * 270.00064 * 13 12 10 40 40 H 1.09003 * 109.46985 * 29.99923 * 13 12 10 41 41 H 1.08994 * 109.47479 * 150.00175 * 13 12 10 42 42 H 1.09000 * 109.47289 * 149.99618 * 14 12 10 43 43 H 1.09008 * 109.46897 * 30.00124 * 14 12 10 44 44 H 0.96698 * 113.99389 * 299.99879 * 17 15 14 45 45 H 1.08998 * 109.47065 * 64.99277 * 18 15 14 46 46 H 1.09001 * 109.46892 * 304.99541 * 18 15 14 47 47 H 0.97000 * 120.00738 * 359.73142 * 19 18 15 48 48 H 0.97004 * 119.99151 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.02619 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0722 -1.1980 5 6 2.7235 3.3754 -1.2014 6 6 2.9497 4.0326 -0.0072 7 6 2.7250 3.3795 1.1958 8 8 2.9521 4.0218 2.3717 9 6 3.4278 5.3671 2.2949 10 6 3.6200 5.9123 3.6865 11 8 3.3742 5.2170 4.6494 12 7 4.0649 7.1724 3.8612 13 6 4.3612 8.0124 2.6981 14 6 4.2522 7.7022 5.2141 15 6 2.9572 8.3668 5.6854 16 1 2.1527 7.6315 5.6913 17 8 2.6197 9.4350 4.7980 18 6 3.1531 8.9207 7.0981 19 7 1.8811 9.4506 7.5955 20 6 1.8115 10.0015 8.8474 21 1 2.6934 10.0413 9.4695 22 6 0.6076 10.5087 9.3165 23 7 -0.4672 10.4597 8.5584 24 14 0.5129 11.2608 11.0238 25 1 0.8078 12.7139 10.9416 26 1 -0.8509 11.0629 11.5769 27 1 1.5067 10.6034 11.9101 28 6 2.2624 2.0713 1.1964 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0817 1.5618 -2.1325 35 1 2.9026 3.8819 -2.1383 36 1 3.3055 5.0523 -0.0103 37 1 2.7004 5.9797 1.7622 38 1 4.3786 5.3863 1.7621 39 1 5.4038 7.8786 2.4094 40 1 3.7148 7.7255 1.8686 41 1 4.1856 9.0580 2.9507 42 1 5.0568 8.4376 5.2082 43 1 4.5097 6.8874 5.8910 44 1 3.2922 10.1276 4.7427 45 1 3.8952 9.7187 7.0759 46 1 3.4968 8.1231 7.7567 47 1 1.0889 9.4144 7.0370 48 1 -1.3086 10.8138 8.8865 49 1 2.0828 1.5620 2.1317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677134436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:27 Heat of formation + Delta-G solvation = -85.445983 kcal Electronic energy + Delta-G solvation = -28245.994852 eV Core-core repulsion = 24173.950335 eV Total energy + Delta-G solvation = -4072.044517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75829 -39.83752 -38.09435 -37.31273 -35.29305 -34.15427 -34.01849 -31.55799 -31.06051 -29.93909 -29.43585 -28.21264 -26.87632 -25.18537 -24.20194 -22.86017 -22.72952 -21.32305 -21.11231 -19.48245 -18.35854 -17.18177 -17.12979 -16.80022 -16.66755 -16.22877 -16.06273 -15.65675 -15.12394 -15.02322 -14.74223 -14.42563 -14.26158 -13.85230 -13.76497 -13.56988 -13.43202 -13.15372 -12.99204 -12.92504 -12.69544 -12.46145 -12.38320 -12.20181 -12.07192 -11.75361 -11.55745 -11.34491 -11.28603 -11.05156 -10.93671 -10.80169 -10.71282 -10.18765 -10.02186 -9.77491 -9.65482 -9.12598 -8.87644 -8.60742 -8.48737 -6.90015 -5.72618 -3.02198 0.99530 1.15078 2.27292 2.42652 3.27045 3.43655 3.45392 3.50049 3.52450 4.16186 4.38225 4.48674 4.56223 4.57687 4.67661 4.71049 4.72615 4.78401 4.91359 4.96336 4.97112 5.01668 5.10937 5.14289 5.24060 5.24466 5.30626 5.48860 5.56150 5.57427 5.60243 5.65738 5.74872 5.75112 5.87404 5.97708 5.99898 6.10558 6.21167 6.29016 6.35127 6.45445 6.54699 6.73650 7.03980 7.17978 7.70698 7.97219 8.00898 8.45423 9.56727 10.14567 10.50032 11.49808 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.001885 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.489031 B =14852.837332 C =15812.297226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.043 4.043 4 C -0.158 4.158 5 C -0.077 4.077 6 C -0.217 4.217 7 C 0.135 3.865 8 O -0.289 6.289 9 C 0.045 3.955 10 C 0.513 3.487 11 O -0.512 6.512 12 N -0.604 5.604 13 C 0.076 3.924 14 C 0.088 3.912 15 C 0.085 3.915 16 H 0.102 0.898 17 O -0.550 6.550 18 C 0.127 3.873 19 N -0.725 5.725 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.147 4.147 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.365 0.635 45 H 0.020 0.980 46 H 0.027 0.973 47 H 0.388 0.612 48 H 0.255 0.745 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.160 -15.353 -24.990 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.043 4.043 4 C -0.176 4.176 5 C -0.095 4.095 6 C -0.235 4.235 7 C 0.089 3.911 8 O -0.201 6.201 9 C -0.033 4.033 10 C 0.299 3.701 11 O -0.386 6.386 12 N -0.338 5.338 13 C -0.067 4.067 14 C -0.035 4.035 15 C 0.024 3.976 16 H 0.120 0.880 17 O -0.354 6.354 18 C -0.001 4.001 19 N -0.370 5.370 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.212 0.788 45 H 0.038 0.962 46 H 0.045 0.955 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.498 -16.118 -24.174 30.893 hybrid contribution 0.254 1.158 0.630 1.343 sum 10.752 -14.960 -23.545 29.896 Atomic orbital electron populations 1.21755 0.94382 1.01894 1.02504 1.20574 0.96457 0.92170 1.03108 1.19699 0.96424 0.96020 0.92179 1.20932 1.03775 0.95411 0.97524 1.20908 0.96776 0.94460 0.97322 1.21245 1.08869 1.01157 0.92261 1.19045 0.95332 0.92282 0.84405 1.86171 1.80543 1.25708 1.27685 1.22515 1.01011 0.83176 0.96638 1.19970 0.77960 0.81844 0.90295 1.90784 1.48413 1.57621 1.41760 1.47570 1.66316 1.12234 1.07709 1.21895 1.00273 0.96744 0.87753 1.22261 0.98582 0.99847 0.82790 1.22579 0.96437 0.89009 0.89545 0.88011 1.86640 1.48632 1.34309 1.65861 1.21216 0.90997 0.96125 0.91804 1.42247 1.06159 1.71875 1.16720 1.19223 0.95051 1.31296 0.91842 0.91236 1.24772 0.95767 1.01937 0.98509 1.69687 0.99919 1.51556 1.36635 0.86171 0.76841 0.79015 0.84034 1.21732 1.21740 1.20761 1.20317 1.04733 0.92615 0.98877 0.92250 0.92488 0.92237 0.90786 0.90706 0.86002 0.85733 0.85526 0.88847 0.89116 0.92559 0.91352 0.89765 0.89810 0.88636 0.78848 0.96240 0.95480 0.77737 0.93496 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.90 37.16 0.37 -0.57 16 2 C -0.09 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.04 -0.37 5.13 -104.65 -0.54 -0.91 16 4 C -0.16 -1.24 9.70 -39.56 -0.38 -1.62 16 5 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 6 C -0.22 -1.92 9.04 -39.43 -0.36 -2.28 16 7 C 0.13 1.52 6.69 -39.22 -0.26 1.26 16 8 O -0.29 -3.82 9.67 -39.33 -0.38 -4.20 16 9 C 0.05 0.47 3.77 36.00 0.14 0.60 16 10 C 0.51 7.07 7.75 -10.99 -0.09 6.99 16 11 O -0.51 -9.51 16.08 -14.36 -0.23 -9.74 16 12 N -0.60 -6.92 2.80 -181.57 -0.51 -7.43 16 13 C 0.08 0.55 9.98 59.85 0.60 1.15 16 14 C 0.09 1.13 5.10 -4.05 -0.02 1.10 16 15 C 0.08 1.42 3.27 -26.73 -0.09 1.33 16 16 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 17 O -0.55 -8.84 12.00 -35.23 -0.42 -9.26 16 18 C 0.13 2.56 5.90 -4.04 -0.02 2.54 16 19 N -0.73 -19.13 5.55 -59.91 -0.33 -19.46 16 20 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 24 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.15 -1.55 9.64 -39.44 -0.38 -1.93 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16 37 H 0.09 0.79 6.91 -51.93 -0.36 0.43 16 38 H 0.09 0.66 7.64 -51.93 -0.40 0.26 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 41 H 0.08 0.59 6.88 -51.93 -0.36 0.23 16 42 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.10 1.35 7.42 -51.92 -0.39 0.96 16 44 H 0.37 4.48 8.79 45.56 0.40 4.88 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.39 11.07 7.67 -40.82 -0.31 10.76 16 48 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 49 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -37.30 407.08 -9.00 -46.30 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.11 Total: 9.93 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.85 Total: -1.73 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.12 Total: -55.32 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -1.03 Total: -23.21 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.30 -9.00 -46.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677134436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.150 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds