Wall clock time and date at job start Sat Apr 11 2020 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.52996 * 109.47222 * 119.99973 * 2 1 3 5 5 C 1.53005 * 109.47332 * 302.57690 * 4 2 1 6 6 F 1.39897 * 109.47018 * 60.11838 * 5 4 2 7 7 F 1.39894 * 109.47550 * 180.12135 * 5 4 2 8 8 F 1.39903 * 109.46739 * 300.11963 * 5 4 2 9 9 C 1.50700 * 109.47210 * 240.00118 * 2 1 3 10 10 O 1.21279 * 119.99908 * 238.39201 * 9 2 1 11 11 N 1.34778 * 120.00151 * 58.38440 * 9 2 1 12 12 C 1.46925 * 120.62784 * 5.07676 * 11 9 2 13 13 C 1.52760 * 109.00865 * 233.58420 * 12 11 9 14 14 C 1.53044 * 109.38178 * 305.58598 * 13 12 11 15 15 C 1.53039 * 109.53465 * 61.24349 * 14 13 12 16 16 H 1.09004 * 109.50221 * 58.58737 * 15 14 13 17 17 C 1.53000 * 109.52630 * 178.66864 * 15 14 13 18 18 N 1.46507 * 109.46588 * 294.85195 * 17 15 14 19 19 C 1.36938 * 119.99507 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00520 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00224 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99917 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46974 * 90.00262 * 23 21 19 25 25 H 1.48497 * 109.46984 * 210.00006 * 23 21 19 26 26 H 1.48500 * 109.47080 * 330.00063 * 23 21 19 27 27 C 1.46920 * 120.62969 * 185.35486 * 11 9 2 28 28 H 1.09001 * 109.46621 * 315.78151 * 1 2 3 29 29 H 1.09002 * 109.47228 * 75.78130 * 1 2 3 30 30 H 1.09002 * 109.46918 * 195.78342 * 1 2 3 31 31 H 1.08998 * 109.47307 * 164.31541 * 3 2 1 32 32 H 1.09003 * 109.47039 * 284.31206 * 3 2 1 33 33 H 1.09004 * 109.47206 * 44.31200 * 3 2 1 34 34 H 1.09004 * 109.47467 * 182.57259 * 4 2 1 35 35 H 1.09004 * 109.47100 * 62.57161 * 4 2 1 36 36 H 1.09003 * 109.58927 * 353.41646 * 12 11 9 37 37 H 1.09004 * 109.58544 * 113.84473 * 12 11 9 38 38 H 1.08999 * 109.56662 * 185.55901 * 13 12 11 39 39 H 1.08993 * 109.38991 * 65.51715 * 13 12 11 40 40 H 1.09002 * 109.46078 * 301.22529 * 14 13 12 41 41 H 1.08997 * 109.45056 * 181.25073 * 14 13 12 42 42 H 1.08998 * 109.47555 * 54.84690 * 17 15 14 43 43 H 1.08999 * 109.47392 * 174.85539 * 17 15 14 44 44 H 0.96999 * 120.00087 * 359.97438 * 18 17 15 45 45 H 0.97001 * 120.00256 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58926 * 246.15584 * 27 11 9 47 47 H 1.08998 * 109.58933 * 6.44326 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4778 -0.0384 2.4977 6 9 0.0802 -0.0919 2.4690 7 9 1.9463 -0.6961 3.6400 8 9 1.8929 1.2973 2.5255 9 6 2.0324 -0.7104 -1.2305 10 8 2.7535 -1.6791 -1.1194 11 7 1.6802 -0.2692 -2.4543 12 6 0.8996 0.9659 -2.6088 13 6 -0.3400 0.6691 -3.4506 14 6 0.0857 0.0248 -4.7720 15 6 0.8067 -1.2950 -4.4888 16 1 0.1443 -1.9599 -3.9344 17 6 1.2030 -1.9552 -5.8110 18 7 -0.0048 -2.3286 -6.5514 19 6 0.1022 -2.9386 -7.7728 20 1 1.0767 -3.1447 -8.1900 21 6 -1.0422 -3.2920 -8.4747 22 7 -0.9395 -3.8786 -9.6483 23 14 -2.7279 -2.9348 -7.7533 24 1 -3.1772 -1.5880 -8.1885 25 1 -3.6957 -3.9565 -8.2273 26 1 -2.6508 -2.9760 -6.2709 27 6 2.0643 -1.0175 -3.6589 28 1 -0.3632 0.7365 0.7167 29 1 -0.3634 0.2524 -0.9962 30 1 -0.3633 -0.9889 0.2795 31 1 3.0939 1.4553 0.2778 32 1 1.9216 1.8697 -0.9958 33 1 1.4678 2.0302 0.7179 34 1 3.1291 -0.6815 1.2726 35 1 1.7148 -1.7614 1.2265 36 1 0.5947 1.3306 -1.6279 37 1 1.5057 1.7210 -3.1095 38 1 -0.8740 1.5973 -3.6541 39 1 -0.9921 -0.0139 -2.9063 40 1 0.7570 0.6983 -5.3047 41 1 -0.7963 -0.1671 -5.3829 42 1 1.7912 -1.2555 -6.4046 43 1 1.7954 -2.8474 -5.6084 44 1 -0.8801 -2.1439 -6.1765 45 1 -1.7391 -4.1252 -10.1390 46 1 2.7672 -0.4275 -4.2470 47 1 2.5298 -1.9600 -3.3707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690429421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:34 Heat of formation + Delta-G solvation = -167.048310 kcal Electronic energy + Delta-G solvation = -31099.007188 eV Core-core repulsion = 26481.567388 eV Total energy + Delta-G solvation = -4617.439800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.54779 -47.99849 -47.98956 -41.10240 -38.11844 -36.48944 -35.16124 -32.87298 -31.92024 -30.72347 -29.62501 -27.88884 -26.15277 -25.85953 -24.29843 -22.79217 -22.49155 -21.43176 -20.14000 -19.30933 -18.95621 -18.63163 -17.62415 -17.31274 -16.73006 -16.27277 -15.56488 -15.26073 -15.14141 -14.92296 -14.69553 -14.52465 -14.42628 -14.36627 -14.25138 -14.10677 -13.98120 -13.83980 -13.79949 -13.07064 -12.88270 -12.79747 -12.61277 -12.37559 -12.29458 -12.15509 -11.95491 -11.92360 -11.53464 -11.48139 -11.21229 -11.02093 -10.91997 -10.70564 -10.50007 -10.38297 -10.10533 -9.76703 -9.59641 -8.92452 -8.77408 -7.24953 -5.78414 -3.13949 2.30703 2.36497 2.76664 3.34466 3.36448 3.42782 3.43770 3.55002 3.69192 4.04078 4.27804 4.31408 4.49034 4.56846 4.61098 4.77307 4.83656 4.92705 4.98928 5.11226 5.14643 5.17460 5.26701 5.32895 5.34590 5.38247 5.45667 5.51496 5.62231 5.65220 5.72002 5.74717 5.82099 5.85403 5.91510 6.01890 6.27974 6.34664 6.40421 6.64535 6.73339 7.18712 7.90961 7.97926 8.40606 9.19475 9.91689 10.11504 11.40110 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.023412 B = 0.002551 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.657405 B =10975.563555 C =11137.902533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.170 4.170 4 C -0.144 4.144 5 C 0.454 3.546 6 F -0.179 7.179 7 F -0.184 7.184 8 F -0.181 7.181 9 C 0.531 3.469 10 O -0.539 6.539 11 N -0.602 5.602 12 C 0.084 3.916 13 C -0.140 4.140 14 C -0.113 4.113 15 C -0.111 4.111 16 H 0.073 0.927 17 C 0.164 3.836 18 N -0.754 5.754 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.120 3.880 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.071 0.929 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 14.682 25.619 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.085 4.085 3 C -0.227 4.227 4 C -0.182 4.182 5 C 0.400 3.600 6 F -0.161 7.161 7 F -0.165 7.165 8 F -0.162 7.162 9 C 0.318 3.682 10 O -0.416 6.416 11 N -0.334 5.334 12 C -0.038 4.038 13 C -0.178 4.178 14 C -0.151 4.151 15 C -0.131 4.131 16 H 0.092 0.908 17 C 0.037 3.963 18 N -0.400 5.400 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.003 4.003 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.193 0.807 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.875 14.073 25.490 29.522 hybrid contribution -1.431 0.246 0.505 1.537 sum 3.444 14.319 25.995 29.877 Atomic orbital electron populations 1.22644 0.91365 1.04275 1.04605 1.20669 0.98278 0.97149 0.92437 1.22605 1.02669 0.92967 1.04479 1.22757 1.04526 1.01898 0.89022 1.20555 0.76127 0.77245 0.86030 1.93176 1.30211 1.96168 1.96532 1.93196 1.88414 1.80862 1.54068 1.93159 1.90053 1.36333 1.96672 1.20070 0.80207 0.83909 0.84026 1.90716 1.36905 1.27660 1.86278 1.47976 1.54136 1.25418 1.05860 1.22313 0.93143 0.86311 1.02012 1.21950 0.96969 1.01647 0.97229 1.21552 1.01298 0.96158 0.96076 1.21732 0.96626 0.97297 0.97398 0.90849 1.20558 0.90168 0.96412 0.89199 1.42690 1.02444 1.73737 1.21115 1.19065 0.94974 1.30592 0.92700 0.89193 1.24672 0.97259 1.00709 0.96544 1.69697 1.28133 1.46628 1.13765 0.86557 0.85724 0.77810 0.78499 1.21060 1.21694 1.20411 1.21661 0.96672 0.97521 0.84413 0.90065 0.90034 0.91160 0.91300 0.90241 0.89949 0.86483 0.86404 0.87772 0.90955 0.90526 0.91413 0.91513 0.90888 0.95254 0.95332 0.80658 0.93047 0.91077 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 6.58 37.16 0.24 -1.02 16 2 C -0.08 -0.66 0.52 -155.66 -0.08 -0.74 16 3 C -0.17 -1.09 6.76 37.16 0.25 -0.84 16 4 C -0.14 -1.13 3.73 -26.73 -0.10 -1.22 16 5 C 0.45 3.53 3.08 37.16 0.11 3.64 16 6 F -0.18 -1.46 13.74 2.25 0.03 -1.43 16 7 F -0.18 -1.62 17.32 2.25 0.04 -1.58 16 8 F -0.18 -1.39 14.01 2.25 0.03 -1.36 16 9 C 0.53 6.04 6.48 -10.98 -0.07 5.97 16 10 O -0.54 -8.00 15.41 5.56 0.09 -7.92 16 11 N -0.60 -6.45 2.96 -173.03 -0.51 -6.96 16 12 C 0.08 0.68 3.80 -3.93 -0.01 0.66 16 13 C -0.14 -1.29 5.76 -26.83 -0.15 -1.45 16 14 C -0.11 -1.43 5.06 -26.69 -0.14 -1.57 16 15 C -0.11 -1.60 2.37 -90.50 -0.21 -1.81 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 17 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 18 N -0.75 -17.57 5.12 -59.90 -0.31 -17.88 16 19 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 23 Si 0.88 21.91 27.74 -169.99 -4.71 17.20 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 27 C 0.12 1.51 5.71 -3.71 -0.02 1.49 16 28 H 0.08 0.52 6.11 -51.93 -0.32 0.20 16 29 H 0.08 0.59 3.91 -51.93 -0.20 0.38 16 30 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 31 H 0.07 0.45 8.02 -51.93 -0.42 0.03 16 32 H 0.08 0.46 4.83 -51.93 -0.25 0.21 16 33 H 0.08 0.47 6.01 -51.93 -0.31 0.16 16 34 H 0.12 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.12 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.10 0.65 3.01 -51.93 -0.16 0.49 16 37 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.66 7.29 -51.93 -0.38 0.28 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.08 7.16 -51.93 -0.37 0.71 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.36 8.17 4.72 -40.82 -0.19 7.97 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 1.34 7.04 -51.93 -0.37 0.97 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -32.84 357.93 -6.40 -39.24 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.76 Total: 4.74 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.46 Total: -0.86 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.04 Total: -53.42 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.10 Total: -4.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.84 -6.40 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690429421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.807 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds