Wall clock time and date at job start Sat Apr 11 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.52996 * 109.47222 * 119.99973 * 2 1 3 5 5 C 1.53005 * 109.47332 * 302.57690 * 4 2 1 6 6 F 1.39897 * 109.47018 * 60.11838 * 5 4 2 7 7 F 1.39894 * 109.47550 * 180.12135 * 5 4 2 8 8 F 1.39903 * 109.46739 * 300.11963 * 5 4 2 9 9 C 1.50700 * 109.47210 * 240.00118 * 2 1 3 10 10 O 1.21279 * 119.99908 * 238.39201 * 9 2 1 11 11 N 1.34778 * 120.00151 * 58.38440 * 9 2 1 12 12 C 1.46925 * 120.62784 * 5.07676 * 11 9 2 13 13 C 1.52760 * 109.00865 * 233.58420 * 12 11 9 14 14 C 1.53044 * 109.38178 * 305.58598 * 13 12 11 15 15 C 1.53039 * 109.53465 * 61.24349 * 14 13 12 16 16 H 1.09004 * 109.50221 * 58.58737 * 15 14 13 17 17 C 1.53000 * 109.52630 * 178.66864 * 15 14 13 18 18 N 1.46507 * 109.46588 * 294.85195 * 17 15 14 19 19 C 1.36938 * 119.99507 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00520 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00224 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99917 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46974 * 90.00262 * 23 21 19 25 25 H 1.48497 * 109.46984 * 210.00006 * 23 21 19 26 26 H 1.48500 * 109.47080 * 330.00063 * 23 21 19 27 27 C 1.46920 * 120.62969 * 185.35486 * 11 9 2 28 28 H 1.09001 * 109.46621 * 315.78151 * 1 2 3 29 29 H 1.09002 * 109.47228 * 75.78130 * 1 2 3 30 30 H 1.09002 * 109.46918 * 195.78342 * 1 2 3 31 31 H 1.08998 * 109.47307 * 164.31541 * 3 2 1 32 32 H 1.09003 * 109.47039 * 284.31206 * 3 2 1 33 33 H 1.09004 * 109.47206 * 44.31200 * 3 2 1 34 34 H 1.09004 * 109.47467 * 182.57259 * 4 2 1 35 35 H 1.09004 * 109.47100 * 62.57161 * 4 2 1 36 36 H 1.09003 * 109.58927 * 353.41646 * 12 11 9 37 37 H 1.09004 * 109.58544 * 113.84473 * 12 11 9 38 38 H 1.08999 * 109.56662 * 185.55901 * 13 12 11 39 39 H 1.08993 * 109.38991 * 65.51715 * 13 12 11 40 40 H 1.09002 * 109.46078 * 301.22529 * 14 13 12 41 41 H 1.08997 * 109.45056 * 181.25073 * 14 13 12 42 42 H 1.08998 * 109.47555 * 54.84690 * 17 15 14 43 43 H 1.08999 * 109.47392 * 174.85539 * 17 15 14 44 44 H 0.96999 * 120.00087 * 359.97438 * 18 17 15 45 45 H 0.97001 * 120.00256 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58926 * 246.15584 * 27 11 9 47 47 H 1.08998 * 109.58933 * 6.44326 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4778 -0.0384 2.4977 6 9 0.0802 -0.0919 2.4690 7 9 1.9463 -0.6961 3.6400 8 9 1.8929 1.2973 2.5255 9 6 2.0324 -0.7104 -1.2305 10 8 2.7535 -1.6791 -1.1194 11 7 1.6802 -0.2692 -2.4543 12 6 0.8996 0.9659 -2.6088 13 6 -0.3400 0.6691 -3.4506 14 6 0.0857 0.0248 -4.7720 15 6 0.8067 -1.2950 -4.4888 16 1 0.1443 -1.9599 -3.9344 17 6 1.2030 -1.9552 -5.8110 18 7 -0.0048 -2.3286 -6.5514 19 6 0.1022 -2.9386 -7.7728 20 1 1.0767 -3.1447 -8.1900 21 6 -1.0422 -3.2920 -8.4747 22 7 -0.9395 -3.8786 -9.6483 23 14 -2.7279 -2.9348 -7.7533 24 1 -3.1772 -1.5880 -8.1885 25 1 -3.6957 -3.9565 -8.2273 26 1 -2.6508 -2.9760 -6.2709 27 6 2.0643 -1.0175 -3.6589 28 1 -0.3632 0.7365 0.7167 29 1 -0.3634 0.2524 -0.9962 30 1 -0.3633 -0.9889 0.2795 31 1 3.0939 1.4553 0.2778 32 1 1.9216 1.8697 -0.9958 33 1 1.4678 2.0302 0.7179 34 1 3.1291 -0.6815 1.2726 35 1 1.7148 -1.7614 1.2265 36 1 0.5947 1.3306 -1.6279 37 1 1.5057 1.7210 -3.1095 38 1 -0.8740 1.5973 -3.6541 39 1 -0.9921 -0.0139 -2.9063 40 1 0.7570 0.6983 -5.3047 41 1 -0.7963 -0.1671 -5.3829 42 1 1.7912 -1.2555 -6.4046 43 1 1.7954 -2.8474 -5.6084 44 1 -0.8801 -2.1439 -6.1765 45 1 -1.7391 -4.1252 -10.1390 46 1 2.7672 -0.4275 -4.2470 47 1 2.5298 -1.9600 -3.3707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690429421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:33 Heat of formation + Delta-G solvation = -187.655129 kcal Electronic energy + Delta-G solvation = -31099.900767 eV Core-core repulsion = 26481.567388 eV Total energy + Delta-G solvation = -4618.333379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.17266 -48.64503 -48.59748 -41.93986 -39.16415 -37.30650 -36.67739 -34.39887 -33.11028 -32.24409 -30.44064 -28.41356 -27.40657 -27.01588 -24.96814 -24.38727 -23.33826 -22.67097 -21.24754 -20.06529 -19.69719 -19.57127 -19.31365 -17.96490 -17.57320 -17.10924 -16.64542 -16.41400 -16.02325 -15.92457 -15.63632 -15.53330 -15.43543 -15.15347 -15.14868 -15.02645 -14.84456 -14.71731 -14.65795 -14.55780 -13.98210 -13.82975 -13.75195 -13.56931 -13.20324 -12.89364 -12.85895 -12.80743 -12.63061 -12.51609 -12.22413 -12.19151 -12.10051 -12.05425 -11.83435 -11.66783 -11.46555 -11.33576 -10.98052 -10.61539 -9.69591 -9.31281 -8.04316 -5.38162 1.35429 1.39933 1.47096 1.48377 1.63975 1.99260 2.46852 2.80244 2.91914 3.08277 3.26781 3.34586 3.54698 3.65355 3.72181 3.75919 3.87346 3.92998 4.00541 4.20423 4.27443 4.38623 4.40161 4.51089 4.57381 4.60711 4.65033 4.75877 4.78026 4.81678 4.83159 4.86664 4.89203 4.96487 5.14547 5.17564 5.23224 5.28098 5.35097 5.44722 5.50597 5.73750 6.19542 6.34958 7.04027 7.06132 7.81569 8.01621 9.17386 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.023412 B = 0.002551 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.657405 B =10975.563555 C =11137.902533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.169 4.169 4 C -0.143 4.143 5 C 0.462 3.538 6 F -0.180 7.180 7 F -0.191 7.191 8 F -0.177 7.177 9 C 0.526 3.474 10 O -0.581 6.581 11 N -0.600 5.600 12 C 0.082 3.918 13 C -0.133 4.133 14 C -0.113 4.113 15 C -0.097 4.097 16 H 0.061 0.939 17 C 0.161 3.839 18 N -0.754 5.754 19 C -0.237 4.237 20 H 0.054 0.946 21 C -0.065 4.065 22 N -0.985 5.985 23 Si 0.957 3.043 24 H -0.272 1.272 25 H -0.296 1.296 26 H -0.254 1.254 27 C 0.126 3.874 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.032 0.968 43 H 0.016 0.984 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.083 0.917 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 17.464 27.945 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.079 4.079 3 C -0.226 4.226 4 C -0.182 4.182 5 C 0.408 3.592 6 F -0.161 7.161 7 F -0.172 7.172 8 F -0.159 7.159 9 C 0.315 3.685 10 O -0.461 6.461 11 N -0.331 5.331 12 C -0.039 4.039 13 C -0.171 4.171 14 C -0.151 4.151 15 C -0.117 4.117 16 H 0.079 0.921 17 C 0.034 3.966 18 N -0.400 5.400 19 C -0.368 4.368 20 H 0.072 0.928 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.784 3.216 24 H -0.198 1.198 25 H -0.223 1.223 26 H -0.179 1.179 27 C 0.003 3.997 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.200 0.800 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.613 16.905 27.861 32.789 hybrid contribution -0.907 -0.653 -0.251 1.145 sum 2.707 16.252 27.610 32.152 Atomic orbital electron populations 1.22669 0.90479 1.04328 1.05318 1.20658 0.98804 0.97812 0.90577 1.22638 1.02831 0.91574 1.05547 1.22729 1.04674 1.01612 0.89148 1.20420 0.75976 0.77227 0.85605 1.93175 1.30270 1.96180 1.96508 1.93186 1.88516 1.81073 1.54436 1.93166 1.90019 1.36032 1.96636 1.20678 0.79477 0.83422 0.84943 1.90699 1.38855 1.29604 1.86903 1.48036 1.54145 1.25952 1.04994 1.22588 0.92614 0.85292 1.03430 1.21928 0.97571 1.02479 0.95136 1.21542 1.00269 0.95246 0.98026 1.21540 0.97418 0.97887 0.94814 0.92062 1.20706 0.88519 0.96272 0.91099 1.42660 1.04249 1.73256 1.19882 1.19041 0.93585 1.29896 0.94238 0.92753 1.25545 1.01889 1.01148 0.97059 1.69889 1.29291 1.48619 1.15705 0.85381 0.79599 0.77719 0.78922 1.19754 1.22301 1.17862 1.21413 0.95739 0.97335 0.85216 0.88571 0.89523 0.92041 0.91356 0.89156 0.88664 0.86359 0.87116 0.85387 0.89069 0.87830 0.91647 0.90853 0.92914 0.94965 0.96573 0.79978 0.93276 0.89900 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 6.58 71.98 0.47 -1.54 16 2 C -0.08 -1.05 0.52 -52.93 -0.03 -1.07 16 3 C -0.17 -1.60 6.76 71.98 0.49 -1.11 16 4 C -0.14 -2.05 3.73 30.59 0.11 -1.94 16 5 C 0.46 6.30 3.08 71.98 0.22 6.52 16 6 F -0.18 -2.53 13.74 44.97 0.62 -1.91 16 7 F -0.19 -3.11 17.32 44.97 0.78 -2.33 16 8 F -0.18 -2.26 14.01 44.97 0.63 -1.63 16 9 C 0.53 11.22 6.48 87.66 0.57 11.79 16 10 O -0.58 -17.22 15.41 -3.02 -0.05 -17.26 16 11 N -0.60 -11.60 2.96 -819.73 -2.42 -14.02 16 12 C 0.08 0.99 3.80 86.22 0.33 1.32 16 13 C -0.13 -1.96 5.76 30.53 0.18 -1.78 16 14 C -0.11 -2.60 5.06 30.62 0.15 -2.44 16 15 C -0.10 -2.69 2.37 -10.71 -0.03 -2.72 16 16 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 17 C 0.16 6.01 5.65 86.38 0.49 6.50 16 18 N -0.75 -35.11 5.12 -343.44 -1.76 -36.87 16 19 C -0.24 -13.65 10.47 84.03 0.88 -12.77 16 20 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 21 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 22 N -0.98 -63.56 13.97 21.65 0.30 -63.26 16 23 Si 0.96 45.17 27.74 68.60 1.90 47.07 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.25 -10.84 6.52 99.48 0.65 -10.19 16 27 C 0.13 3.07 5.71 86.37 0.49 3.56 16 28 H 0.10 0.87 6.11 -2.39 -0.01 0.86 16 29 H 0.09 0.93 3.91 -2.39 -0.01 0.92 16 30 H 0.06 0.86 7.85 -2.39 -0.02 0.84 16 31 H 0.07 0.69 8.02 -2.39 -0.02 0.67 16 32 H 0.09 0.66 4.83 -2.39 -0.01 0.65 16 33 H 0.09 0.70 6.01 -2.38 -0.01 0.69 16 34 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.11 1.76 8.05 -2.38 -0.02 1.74 16 36 H 0.13 1.00 3.01 -2.39 -0.01 1.00 16 37 H 0.09 0.86 8.12 -2.38 -0.02 0.84 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.03 7.29 -2.39 -0.02 1.01 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.44 7.16 -2.39 -0.02 1.42 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.37 16.12 4.72 -92.71 -0.44 15.69 16 45 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.07 2.10 7.04 -2.39 -0.02 2.08 16 Total: -1.00 -73.23 357.93 5.31 -67.93 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.51 Total: 21.37 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 4.80 Total: 0.91 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -3.88 Total: -114.15 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.05 Total: -17.26 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 2.03 Total: -5.87 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Total: -73.23 5.31 -67.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690429421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.729 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds