Wall clock time and date at job start Sat Apr 11 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52996 * 109.47355 * 120.00041 * 2 1 3 5 5 C 1.53000 * 109.47194 * 294.12119 * 4 2 1 6 6 F 1.39896 * 109.47035 * 56.17470 * 5 4 2 7 7 F 1.39895 * 109.47415 * 176.17746 * 5 4 2 8 8 F 1.39902 * 109.47195 * 296.17720 * 5 4 2 9 9 C 1.50701 * 109.46966 * 240.00306 * 2 1 3 10 10 O 1.21284 * 119.99445 * 239.13167 * 9 2 1 11 11 N 1.34772 * 120.00215 * 59.13297 * 9 2 1 12 12 C 1.46926 * 120.63147 * 3.78050 * 11 9 2 13 13 C 1.52754 * 109.01284 * 233.58622 * 12 11 9 14 14 C 1.53042 * 109.38345 * 305.59126 * 13 12 11 15 15 C 1.53039 * 109.53905 * 61.23660 * 14 13 12 16 16 C 1.46928 * 120.62982 * 184.06578 * 11 9 2 17 17 H 1.09006 * 109.58426 * 246.29161 * 16 11 9 18 18 C 1.52995 * 109.58798 * 6.57937 * 16 11 9 19 19 N 1.46504 * 109.46989 * 291.33928 * 18 16 11 20 20 C 1.36934 * 119.99628 * 187.60746 * 19 18 16 21 21 H 1.07997 * 120.00418 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99767 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99892 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00020 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47374 * 89.99833 * 24 22 20 26 26 H 1.48498 * 109.47208 * 209.99802 * 24 22 20 27 27 H 1.48498 * 109.47359 * 329.99746 * 24 22 20 28 28 H 1.09002 * 109.47314 * 311.66523 * 1 2 3 29 29 H 1.08996 * 109.47473 * 71.66464 * 1 2 3 30 30 H 1.09007 * 109.46923 * 191.66718 * 1 2 3 31 31 H 1.09006 * 109.47472 * 164.60934 * 3 2 1 32 32 H 1.09001 * 109.47297 * 284.60888 * 3 2 1 33 33 H 1.08997 * 109.47366 * 44.61218 * 3 2 1 34 34 H 1.09001 * 109.47158 * 54.12138 * 4 2 1 35 35 H 1.08997 * 109.47535 * 174.11908 * 4 2 1 36 36 H 1.09001 * 109.58813 * 353.42705 * 12 11 9 37 37 H 1.09005 * 109.58485 * 113.84306 * 12 11 9 38 38 H 1.09001 * 109.56643 * 185.55612 * 13 12 11 39 39 H 1.09001 * 109.38484 * 65.51703 * 13 12 11 40 40 H 1.09001 * 109.45757 * 301.21442 * 14 13 12 41 41 H 1.09005 * 109.44946 * 181.25392 * 14 13 12 42 42 H 1.08998 * 109.49508 * 178.68505 * 15 14 13 43 43 H 1.09000 * 109.49497 * 58.58675 * 15 14 13 44 44 H 1.09004 * 109.47203 * 51.34017 * 18 16 11 45 45 H 1.09004 * 109.47189 * 171.34231 * 18 16 11 46 46 H 0.96998 * 120.00293 * 7.60664 * 19 18 16 47 47 H 0.96997 * 119.99828 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6543 0.0802 2.4941 6 9 0.2688 0.2731 2.5137 7 9 2.0437 -0.6217 3.6398 8 9 2.2977 1.3223 2.4670 9 6 2.0323 -0.7104 -1.2305 10 8 2.7425 -1.6872 -1.1193 11 7 1.6924 -0.2602 -2.4545 12 6 0.9018 0.9688 -2.6072 13 6 -0.3233 0.6686 -3.4688 14 6 0.1265 0.0419 -4.7906 15 6 0.8567 -1.2737 -4.5109 16 6 2.1000 -0.9924 -3.6613 17 1 2.8070 -0.3906 -4.2325 18 6 2.7578 -2.3146 -3.2614 19 7 4.0439 -2.0440 -2.6139 20 6 4.8877 -3.0783 -2.3086 21 1 4.6054 -4.0935 -2.5455 22 6 6.1065 -2.8219 -1.6956 23 7 6.9178 -3.8160 -1.4026 24 14 6.5951 -1.0660 -1.2866 25 1 6.1188 -0.7247 0.0780 26 1 8.0735 -0.9381 -1.3412 27 1 5.9813 -0.1392 -2.2712 28 1 -0.3634 0.6832 0.7677 29 1 -0.3634 0.3233 -0.9754 30 1 -0.3633 -1.0065 0.2078 31 1 3.0953 1.4549 0.2727 32 1 1.9167 1.8715 -0.9944 33 1 1.4713 2.0289 0.7217 34 1 1.5934 -1.7140 1.3034 35 1 3.1249 -0.8133 1.1981 36 1 0.5801 1.3205 -1.6269 37 1 1.5071 1.7348 -3.0919 38 1 -0.8636 1.5936 -3.6701 39 1 -0.9759 -0.0263 -2.9402 40 1 0.7982 0.7273 -5.3074 41 1 -0.7453 -0.1523 -5.4155 42 1 1.1563 -1.7310 -5.4539 43 1 0.1935 -1.9505 -3.9723 44 1 2.1076 -2.8490 -2.5687 45 1 2.9199 -2.9235 -4.1508 46 1 4.2976 -1.1322 -2.4015 47 1 7.7692 -3.6369 -0.9740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690484154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:37 Heat of formation + Delta-G solvation = -117.401974 kcal Electronic energy + Delta-G solvation = -33042.285359 eV Core-core repulsion = 28426.998385 eV Total energy + Delta-G solvation = -4615.286974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.19620 -47.65839 -47.61957 -40.85124 -37.50411 -36.47170 -34.14205 -32.72895 -31.99713 -30.35769 -29.28912 -27.52222 -26.61618 -24.73286 -23.89167 -22.86840 -22.31996 -20.93497 -20.35228 -18.94875 -18.59788 -18.28013 -17.34043 -16.87244 -16.10127 -15.87365 -15.29911 -14.89394 -14.85643 -14.54080 -14.47365 -14.38035 -14.26437 -14.02881 -13.98311 -13.80247 -13.63043 -13.60035 -13.39723 -12.76511 -12.63199 -12.44653 -12.30354 -12.09299 -11.94357 -11.83464 -11.68864 -11.43442 -11.37663 -11.15855 -11.09304 -11.02493 -10.84047 -10.73373 -10.35258 -10.24521 -9.98973 -9.40933 -8.75861 -8.51015 -8.22009 -6.74514 -5.57549 -2.82091 2.73332 3.08762 3.19815 3.45937 3.49896 3.54092 3.85534 3.98253 4.09968 4.51364 4.63320 4.71563 4.73689 4.76068 4.82181 4.83638 4.99567 5.05620 5.27410 5.36231 5.39126 5.47432 5.49079 5.58764 5.63904 5.69247 5.71256 5.72907 5.75263 5.82644 5.87941 5.90984 5.97535 5.98264 6.09636 6.13329 6.15449 6.32299 6.51354 6.79068 7.09713 7.76395 8.17705 8.60974 8.72574 9.42549 10.15912 10.37069 11.62431 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008613 B = 0.006812 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.064599 B = 4109.235035 C = 6495.923229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.169 4.169 4 C -0.145 4.145 5 C 0.454 3.546 6 F -0.182 7.182 7 F -0.184 7.184 8 F -0.182 7.182 9 C 0.477 3.523 10 O -0.438 6.438 11 N -0.611 5.611 12 C 0.088 3.912 13 C -0.137 4.137 14 C -0.117 4.117 15 C -0.126 4.126 16 C 0.137 3.863 17 H 0.069 0.931 18 C 0.169 3.831 19 N -0.713 5.713 20 C -0.211 4.211 21 H 0.085 0.915 22 C -0.004 4.004 23 N -0.944 5.944 24 Si 0.884 3.116 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.284 1.284 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.029 0.971 46 H 0.358 0.642 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.867 13.570 0.153 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.084 4.084 3 C -0.226 4.226 4 C -0.183 4.183 5 C 0.400 3.600 6 F -0.164 7.164 7 F -0.166 7.166 8 F -0.164 7.164 9 C 0.261 3.739 10 O -0.306 6.306 11 N -0.348 5.348 12 C -0.035 4.035 13 C -0.175 4.175 14 C -0.155 4.155 15 C -0.165 4.165 16 C 0.034 3.966 17 H 0.086 0.914 18 C 0.042 3.958 19 N -0.358 5.358 20 C -0.342 4.342 21 H 0.103 0.897 22 C -0.198 4.198 23 N -0.594 5.594 24 Si 0.716 3.284 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.211 1.211 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.191 0.809 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.357 12.781 0.287 22.370 hybrid contribution 0.398 1.488 0.624 1.661 sum -17.959 14.269 0.911 22.956 Atomic orbital electron populations 1.22598 0.92189 1.03784 1.04007 1.20678 0.97559 0.96681 0.93479 1.22574 1.02702 0.93647 1.03647 1.22777 1.06841 0.99848 0.88839 1.20666 0.74387 0.78713 0.86242 1.93099 1.31289 1.95441 1.96575 1.93190 1.90840 1.78717 1.53835 1.93168 1.81680 1.44895 1.96622 1.20161 0.82293 0.87718 0.83753 1.91372 1.30477 1.23938 1.84803 1.47802 1.55736 1.25858 1.05429 1.22153 0.92433 0.87274 1.01644 1.21897 0.97652 1.01169 0.96790 1.21493 1.00052 0.97154 0.96806 1.21892 0.97058 0.97435 1.00136 1.21549 0.95001 0.94888 0.85144 0.91351 1.20741 0.88276 0.91906 0.94875 1.42626 1.16499 1.05499 1.71223 1.19020 0.95733 0.88958 1.30440 0.89681 1.24536 0.97291 0.96129 1.01797 1.69697 1.11313 1.29291 1.49091 0.86533 0.76987 0.86701 0.78159 1.21487 1.22307 1.21086 0.90147 0.90529 0.91722 0.91344 0.90640 0.90976 0.86564 0.86108 0.87746 0.91958 0.91116 0.91427 0.91918 0.91931 0.90744 0.91417 0.94579 0.95353 0.80868 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 7.13 37.16 0.26 -1.45 16 2 C -0.08 -1.03 0.52 -155.66 -0.08 -1.11 16 3 C -0.17 -1.95 6.54 37.16 0.24 -1.71 16 4 C -0.14 -2.02 3.85 -26.73 -0.10 -2.12 16 5 C 0.45 5.78 2.98 37.16 0.11 5.89 16 6 F -0.18 -2.11 13.85 2.25 0.03 -2.08 16 7 F -0.18 -2.57 17.32 2.25 0.04 -2.53 16 8 F -0.18 -2.35 13.86 2.25 0.03 -2.32 16 9 C 0.48 7.76 5.94 -10.99 -0.07 7.69 16 10 O -0.44 -9.35 9.32 5.55 0.05 -9.30 16 11 N -0.61 -8.48 2.97 -165.48 -0.49 -8.98 16 12 C 0.09 0.87 3.80 -3.94 -0.01 0.85 16 13 C -0.14 -1.12 5.75 -26.84 -0.15 -1.27 16 14 C -0.12 -1.04 5.89 -26.69 -0.16 -1.20 16 15 C -0.13 -1.44 5.36 -26.61 -0.14 -1.59 16 16 C 0.14 2.07 2.94 -67.60 -0.20 1.87 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 18 C 0.17 3.38 4.87 -4.04 -0.02 3.36 16 19 N -0.71 -17.64 2.88 -59.91 -0.17 -17.81 16 20 C -0.21 -6.24 10.21 -15.06 -0.15 -6.39 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 23 N -0.94 -30.98 13.97 55.49 0.78 -30.20 16 24 Si 0.88 23.63 27.74 -169.99 -4.71 18.92 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 27 H -0.28 -7.21 6.52 56.52 0.37 -6.84 16 28 H 0.08 0.74 5.61 -51.93 -0.29 0.45 16 29 H 0.08 0.68 3.97 -51.93 -0.21 0.48 16 30 H 0.06 0.68 8.05 -51.92 -0.42 0.26 16 31 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 32 H 0.07 0.78 4.82 -51.93 -0.25 0.53 16 33 H 0.07 0.73 6.38 -51.93 -0.33 0.39 16 34 H 0.12 1.59 8.08 -51.93 -0.42 1.17 16 35 H 0.12 1.99 7.91 -51.93 -0.41 1.58 16 36 H 0.10 0.91 2.94 -51.93 -0.15 0.76 16 37 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.78 6.69 -51.93 -0.35 0.43 16 45 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 46 H 0.36 8.89 4.58 -40.82 -0.19 8.71 16 47 H 0.25 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -34.20 349.51 -6.52 -40.72 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.77 Total: 5.68 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.57 Total: 2.62 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.11 Total: -56.99 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.05 Total: -9.30 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.10 Total: -6.92 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.71 Total: 18.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.20 -6.52 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690484154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.680 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds