Wall clock time and date at job start Sat Apr 11 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 C 1.52997 * 109.47386 * 239.99559 * 2 1 3 5 5 C 1.53002 * 109.46979 * 65.65810 * 4 2 1 6 6 F 1.39897 * 109.47224 * 59.09941 * 5 4 2 7 7 F 1.39900 * 109.47180 * 179.10317 * 5 4 2 8 8 F 1.39905 * 109.46791 * 299.10034 * 5 4 2 9 9 C 1.50706 * 109.47234 * 120.00016 * 2 1 3 10 10 O 1.21281 * 120.00048 * 113.22101 * 9 2 1 11 11 N 1.34774 * 119.99685 * 293.22613 * 9 2 1 12 12 C 1.46923 * 120.63376 * 4.63207 * 11 9 2 13 13 C 1.53186 * 108.77902 * 126.39122 * 12 11 9 14 14 C 1.53041 * 109.31148 * 54.63997 * 13 12 11 15 15 C 1.53044 * 109.53311 * 298.63232 * 14 13 12 16 16 C 1.46926 * 120.63151 * 184.63387 * 11 9 2 17 17 H 1.09000 * 109.70634 * 113.74443 * 16 11 9 18 18 C 1.52999 * 109.58460 * 353.39259 * 16 11 9 19 19 N 1.46502 * 109.47150 * 69.83764 * 18 16 11 20 20 C 1.36933 * 120.00247 * 174.79778 * 19 18 16 21 21 H 1.08010 * 119.99847 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00284 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00198 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00252 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46686 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46946 * 120.00021 * 24 22 20 27 27 H 1.48499 * 109.46769 * 239.99907 * 24 22 20 28 28 H 1.08996 * 109.47339 * 284.45075 * 1 2 3 29 29 H 1.08997 * 109.46807 * 44.45464 * 1 2 3 30 30 H 1.08995 * 109.46789 * 164.44958 * 1 2 3 31 31 H 1.09003 * 109.47308 * 196.70704 * 3 2 1 32 32 H 1.09001 * 109.47162 * 316.70312 * 3 2 1 33 33 H 1.09003 * 109.47182 * 76.71168 * 3 2 1 34 34 H 1.09005 * 109.47641 * 185.65369 * 4 2 1 35 35 H 1.08997 * 109.47551 * 305.65849 * 4 2 1 36 36 H 1.09009 * 109.58619 * 6.60378 * 12 11 9 37 37 H 1.08998 * 109.70651 * 246.25435 * 12 11 9 38 38 H 1.08996 * 109.49955 * 294.68551 * 13 12 11 39 39 H 1.09008 * 109.50235 * 174.58788 * 13 12 11 40 40 H 1.09005 * 109.46068 * 178.61673 * 14 13 12 41 41 H 1.08994 * 109.45350 * 58.64408 * 14 13 12 42 42 H 1.08999 * 109.49838 * 301.41167 * 15 14 13 43 43 H 1.09006 * 109.52227 * 181.33190 * 15 14 13 44 44 H 1.09000 * 109.47360 * 309.83421 * 18 16 11 45 45 H 1.09000 * 109.47165 * 189.83674 * 18 16 11 46 46 H 0.97000 * 120.00120 * 354.79067 * 19 18 16 47 47 H 0.97000 * 120.00367 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6495 0.0773 -2.4944 6 9 2.2020 1.3603 -2.4179 7 9 2.1335 -0.5716 -3.6354 8 9 0.2557 0.1734 -2.5685 9 6 2.0324 -0.7104 1.2305 10 8 2.6249 -1.7632 1.1235 11 7 1.8230 -0.1759 2.4499 12 6 1.0203 1.0449 2.6043 13 6 -0.0896 0.7794 3.6262 14 6 0.5325 0.2675 4.9275 15 6 1.2680 -1.0478 4.6603 16 6 2.3932 -0.8028 3.6501 17 1 3.1415 -0.1430 4.0892 18 6 3.0430 -2.1357 3.2729 19 7 4.2503 -1.8840 2.4821 20 6 5.0608 -2.9263 2.1193 21 1 4.8103 -3.9340 2.4165 22 6 6.2044 -2.6879 1.3696 23 7 6.5095 -1.4600 1.0069 24 14 7.3106 -4.1097 0.8753 25 1 6.7507 -5.3794 1.4042 26 1 7.3911 -4.1825 -0.6058 27 1 8.6695 -3.8973 1.4351 28 1 -0.3634 0.2564 0.9951 29 1 -0.3633 0.7335 -0.7197 30 1 -0.3633 -0.9900 -0.2755 31 1 3.0891 1.4569 -0.2954 32 1 1.4560 2.0343 -0.7048 33 1 1.9384 1.8638 1.0002 34 1 3.1254 -0.8099 -1.2000 35 1 1.5964 -1.7156 -1.3013 36 1 0.5772 1.3147 1.6455 37 1 1.6537 1.8593 2.9560 38 1 -0.7758 0.0301 3.2317 39 1 -0.6330 1.7039 3.8219 40 1 -0.2530 0.1010 5.6646 41 1 1.2372 1.0067 5.3083 42 1 0.5690 -1.7799 4.2560 43 1 1.6910 -1.4243 5.5917 44 1 2.3414 -2.7288 2.6863 45 1 3.3092 -2.6795 4.1793 46 1 4.4754 -0.9789 2.2154 47 1 7.3084 -1.2934 0.4827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690484155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:40 Heat of formation + Delta-G solvation = -126.873949 kcal Electronic energy + Delta-G solvation = -32885.830064 eV Core-core repulsion = 28270.132355 eV Total energy + Delta-G solvation = -4615.697709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05322 -47.50319 -47.49645 -40.65642 -37.35748 -36.22031 -34.00940 -32.60319 -31.90265 -29.88390 -29.12925 -27.35497 -26.32399 -24.59040 -23.75122 -22.81028 -22.41472 -20.95328 -20.24013 -18.80027 -18.45580 -18.08133 -16.85131 -16.69622 -15.92095 -15.69561 -15.08002 -14.77179 -14.71444 -14.51023 -14.38438 -14.26005 -14.19995 -13.90122 -13.67216 -13.64432 -13.50346 -13.35516 -13.33757 -12.87215 -12.51756 -12.25149 -12.09960 -11.98513 -11.78768 -11.69506 -11.52401 -11.24419 -11.14238 -11.00823 -10.89661 -10.81692 -10.72408 -10.70986 -10.31074 -10.14990 -9.83211 -9.51106 -8.72863 -8.26466 -8.06303 -6.51778 -5.55810 -2.75803 2.88346 3.28558 3.36759 3.54651 3.59737 3.61601 4.00853 4.13231 4.25142 4.66389 4.74554 4.75608 4.84635 4.88615 4.95734 4.98382 5.15251 5.21147 5.38608 5.48469 5.54335 5.60216 5.63314 5.74473 5.79380 5.80741 5.83241 5.86147 5.88138 5.97734 6.02863 6.03872 6.09549 6.12614 6.22620 6.34751 6.38156 6.54654 6.67736 6.94013 7.28897 7.87783 7.94460 8.62399 8.90978 9.74075 10.34002 10.68651 11.68078 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008214 B = 0.006396 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.965240 B = 4376.657094 C = 7139.377376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.077 4.077 3 C -0.170 4.170 4 C -0.142 4.142 5 C 0.453 3.547 6 F -0.180 7.180 7 F -0.186 7.186 8 F -0.186 7.186 9 C 0.492 3.508 10 O -0.442 6.442 11 N -0.610 5.610 12 C 0.091 3.909 13 C -0.136 4.136 14 C -0.117 4.117 15 C -0.127 4.127 16 C 0.143 3.857 17 H 0.068 0.932 18 C 0.160 3.840 19 N -0.697 5.697 20 C -0.205 4.205 21 H 0.064 0.936 22 C -0.022 4.022 23 N -0.938 5.938 24 Si 0.899 3.101 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.296 1.296 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.013 0.987 46 H 0.379 0.621 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.233 8.787 0.929 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.081 4.081 3 C -0.227 4.227 4 C -0.180 4.180 5 C 0.399 3.601 6 F -0.162 7.162 7 F -0.168 7.168 8 F -0.168 7.168 9 C 0.276 3.724 10 O -0.310 6.310 11 N -0.348 5.348 12 C -0.032 4.032 13 C -0.174 4.174 14 C -0.155 4.155 15 C -0.166 4.166 16 C 0.039 3.961 17 H 0.086 0.914 18 C 0.033 3.967 19 N -0.340 5.340 20 C -0.337 4.337 21 H 0.082 0.918 22 C -0.216 4.216 23 N -0.590 5.590 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.224 1.224 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.212 0.788 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.823 7.989 0.801 18.641 hybrid contribution 0.714 -0.215 -0.670 1.002 sum -16.110 7.774 0.131 17.888 Atomic orbital electron populations 1.22421 0.92558 1.03434 1.03309 1.20629 0.97019 0.96949 0.93500 1.22672 1.03000 0.93357 1.03629 1.22758 1.07136 0.99483 0.88669 1.20709 0.74298 0.78771 0.86276 1.93165 1.85442 1.41317 1.96258 1.93182 1.87963 1.81297 1.54310 1.93126 1.30654 1.96307 1.96692 1.19927 0.81685 0.87360 0.83409 1.91141 1.34768 1.20225 1.84854 1.47700 1.53664 1.27322 1.06074 1.22172 0.92838 0.87618 1.00534 1.21962 0.97963 1.01333 0.96178 1.21491 0.99560 0.97541 0.96897 1.21906 0.98004 0.97414 0.99255 1.21489 0.93735 0.96372 0.84468 0.91425 1.20905 0.90280 0.92162 0.93387 1.42226 1.22727 1.07230 1.61830 1.19185 1.00671 0.88576 1.25281 0.91752 1.24582 0.99067 0.96050 1.01925 1.69656 1.27405 1.17928 1.43963 0.86199 0.80763 0.81919 0.77920 1.20895 1.22268 1.22363 0.90958 0.90768 0.91779 0.90956 0.91154 0.90666 0.85665 0.86951 0.88052 0.91913 0.91622 0.91243 0.92120 0.91910 0.91624 0.90991 0.94128 0.96923 0.78750 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 6.94 37.16 0.26 -1.50 16 2 C -0.08 -1.07 0.52 -155.66 -0.08 -1.15 16 3 C -0.17 -2.17 6.51 37.16 0.24 -1.93 16 4 C -0.14 -2.13 3.76 -26.73 -0.10 -2.23 16 5 C 0.45 6.20 3.06 37.16 0.11 6.31 16 6 F -0.18 -2.50 13.48 2.25 0.03 -2.47 16 7 F -0.19 -2.76 17.32 2.25 0.04 -2.72 16 8 F -0.19 -2.32 14.21 2.25 0.03 -2.29 16 9 C 0.49 8.50 5.90 -10.98 -0.06 8.43 16 10 O -0.44 -9.81 9.76 5.56 0.05 -9.76 16 11 N -0.61 -9.05 2.96 -165.22 -0.49 -9.54 16 12 C 0.09 0.99 3.69 -3.72 -0.01 0.97 16 13 C -0.14 -1.23 5.90 -26.61 -0.16 -1.39 16 14 C -0.12 -1.14 5.88 -26.69 -0.16 -1.30 16 15 C -0.13 -1.57 5.36 -26.61 -0.14 -1.71 16 16 C 0.14 2.30 2.93 -67.60 -0.20 2.10 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 18 C 0.16 3.36 4.87 -4.04 -0.02 3.34 16 19 N -0.70 -18.05 3.23 -59.91 -0.19 -18.25 16 20 C -0.21 -5.95 9.72 -15.06 -0.15 -6.10 16 21 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 23 N -0.94 -29.06 13.06 55.49 0.72 -28.33 16 24 Si 0.90 23.50 29.55 -169.99 -5.02 18.48 16 25 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 27 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 28 H 0.07 0.71 4.88 -51.93 -0.25 0.46 16 29 H 0.07 0.74 6.02 -51.93 -0.31 0.43 16 30 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 31 H 0.07 1.09 7.62 -51.93 -0.40 0.69 16 32 H 0.07 0.79 6.18 -51.93 -0.32 0.47 16 33 H 0.07 0.87 4.40 -51.93 -0.23 0.64 16 34 H 0.13 2.26 8.04 -51.93 -0.42 1.85 16 35 H 0.11 1.66 8.05 -51.93 -0.42 1.24 16 36 H 0.10 0.98 3.07 -51.92 -0.16 0.82 16 37 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 38 H 0.07 0.61 7.86 -51.93 -0.41 0.21 16 39 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.92 6.31 -51.93 -0.33 0.59 16 45 H 0.01 0.28 8.12 -51.93 -0.42 -0.15 16 46 H 0.38 10.43 7.08 -40.82 -0.29 10.14 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -32.61 353.92 -6.91 -39.52 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.86 Total: 6.95 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.56 Total: 3.09 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.04 Total: -56.12 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.05 Total: -9.76 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.10 Total: -7.48 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.61 -6.91 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690484155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.355 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds