Wall clock time and date at job start Sat Apr 11 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47269 * 2 1 4 4 C 1.53006 * 109.46636 * 240.00124 * 2 1 3 5 5 C 1.50700 * 109.47175 * 120.00852 * 2 1 3 6 6 O 1.21280 * 119.99668 * 2.32911 * 5 2 1 7 7 N 1.34776 * 119.99836 * 182.33674 * 5 2 1 8 8 C 1.46927 * 120.62992 * 354.46103 * 7 5 2 9 9 C 1.53196 * 108.89117 * 126.34679 * 8 7 5 10 10 C 1.53351 * 109.15116 * 54.57303 * 9 8 7 11 11 H 1.09004 * 109.42679 * 58.76077 * 10 9 8 12 12 C 1.52993 * 109.40697 * 178.67986 * 10 9 8 13 13 F 1.39898 * 109.47357 * 187.48579 * 12 10 9 14 14 F 1.39902 * 109.47195 * 307.48994 * 12 10 9 15 15 F 1.39903 * 109.47189 * 67.48677 * 12 10 9 16 16 C 1.53038 * 109.60889 * 298.71460 * 10 9 8 17 17 H 1.09003 * 109.52146 * 301.40471 * 16 10 9 18 18 C 1.53000 * 109.49591 * 181.32727 * 16 10 9 19 19 N 1.46498 * 109.46755 * 179.81773 * 18 16 10 20 20 C 1.36939 * 119.99746 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00363 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99928 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00081 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47155 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47459 * 120.00193 * 24 22 20 27 27 H 1.48499 * 109.47479 * 240.00218 * 24 22 20 28 28 C 1.46922 * 120.62919 * 174.48243 * 7 5 2 29 29 H 1.08997 * 109.46666 * 299.99487 * 1 2 3 30 30 H 1.08999 * 109.47007 * 59.99718 * 1 2 3 31 31 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47083 * 183.04291 * 3 2 1 33 33 H 1.08998 * 109.47686 * 303.04639 * 3 2 1 34 34 H 1.09005 * 109.47143 * 63.04450 * 3 2 1 35 35 H 1.08993 * 109.47503 * 296.75963 * 4 2 1 36 36 H 1.09004 * 109.47205 * 56.75922 * 4 2 1 37 37 H 1.09002 * 109.46909 * 176.75519 * 4 2 1 38 38 H 1.08999 * 109.58157 * 246.19871 * 8 7 5 39 39 H 1.08996 * 109.58656 * 6.48181 * 8 7 5 40 40 H 1.08996 * 109.49462 * 174.65583 * 9 8 7 41 41 H 1.09003 * 109.49122 * 294.75067 * 9 8 7 42 42 H 1.09000 * 109.47106 * 299.81447 * 18 16 10 43 43 H 1.08995 * 109.47492 * 59.81801 * 18 16 10 44 44 H 0.96994 * 120.00578 * 359.97438 * 19 18 16 45 45 H 0.97002 * 119.99685 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.58932 * 353.37696 * 28 7 5 47 47 H 1.09007 * 109.58623 * 113.79873 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7106 1.2303 6 8 1.2450 -1.2084 2.0070 7 7 3.3566 -0.7927 1.4676 8 6 4.3261 -0.3022 0.4787 9 6 5.2745 0.6877 1.1625 10 6 5.9067 0.0147 2.3869 11 1 6.4454 -0.8789 2.0716 12 6 6.8802 0.9873 3.0555 13 9 7.5828 0.3227 4.0663 14 9 7.7820 1.4733 2.1027 15 9 6.1659 2.0554 3.6089 16 6 4.8111 -0.3748 3.3818 17 1 4.2559 0.5150 3.6790 18 6 5.4472 -1.0159 4.6168 19 7 4.3982 -1.3845 5.5706 20 6 4.7311 -1.9789 6.7585 21 1 5.7670 -2.1756 6.9924 22 6 3.7372 -2.3278 7.6626 23 7 2.4748 -2.0877 7.3779 24 14 4.1914 -3.1379 9.2834 25 1 5.6658 -3.2964 9.3615 26 1 3.7249 -2.2891 10.4090 27 1 3.5445 -4.4719 9.3684 28 6 3.8579 -1.3748 2.7200 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1287 1.4428 -0.0546 33 1 1.6329 1.9718 -0.8614 34 1 1.7220 1.9403 0.9161 35 1 1.7248 -1.7643 -1.2208 36 1 1.6299 -0.2420 -2.1384 37 1 3.1284 -0.6712 -1.2789 38 1 4.8979 -1.1405 0.0807 39 1 3.7985 0.1985 -0.3331 40 1 6.0555 0.9856 0.4630 41 1 4.7148 1.5675 1.4800 42 1 5.9982 -1.9083 4.3198 43 1 6.1299 -0.3061 5.0838 44 1 3.4679 -1.2076 5.3609 45 1 1.7803 -2.3311 8.0099 46 1 3.0215 -1.5797 3.3883 47 1 4.3915 -2.3006 2.5047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692152836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:44 Heat of formation + Delta-G solvation = -168.956052 kcal Electronic energy + Delta-G solvation = -32057.641445 eV Core-core repulsion = 27440.118919 eV Total energy + Delta-G solvation = -4617.522526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05514 -47.55561 -47.44048 -40.83613 -38.10448 -36.07130 -34.81291 -33.36277 -31.94815 -29.94114 -27.67243 -27.51326 -27.45680 -25.68563 -24.04841 -23.34930 -22.01073 -21.37555 -20.21844 -18.97656 -18.29212 -18.19421 -17.54594 -16.96891 -16.48898 -16.16978 -15.33244 -14.95267 -14.80628 -14.59526 -14.38843 -14.28924 -14.10800 -14.00591 -13.79930 -13.64841 -13.58222 -13.47480 -13.26894 -12.81140 -12.76228 -12.63893 -12.52834 -12.41413 -12.34467 -11.93730 -11.89775 -11.62871 -11.41956 -11.14045 -11.09490 -11.04321 -10.76624 -10.67453 -10.57882 -10.38672 -9.97341 -9.64368 -9.45236 -8.84570 -8.60765 -6.88308 -5.70691 -3.00738 2.68877 2.84108 2.99158 3.47367 3.52607 3.55231 3.81781 3.97233 4.03379 4.24186 4.51472 4.54318 4.62374 4.66357 4.72357 4.85013 4.96971 5.01993 5.07418 5.16417 5.26107 5.34517 5.38841 5.41573 5.47443 5.55185 5.61331 5.64734 5.67709 5.69894 5.75453 5.80497 5.90314 6.01696 6.05929 6.17486 6.20270 6.43892 6.54923 6.70490 6.73174 7.44548 7.75611 8.28185 8.46427 9.57906 10.13390 10.47982 11.51613 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.004665 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.577163 B = 6000.605523 C = 8365.889489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.156 4.156 4 C -0.155 4.155 5 C 0.521 3.479 6 O -0.524 6.524 7 N -0.612 5.612 8 C 0.087 3.913 9 C -0.136 4.136 10 C -0.125 4.125 11 H 0.116 0.884 12 C 0.455 3.545 13 F -0.172 7.172 14 F -0.190 7.190 15 F -0.180 7.180 16 C -0.105 4.105 17 H 0.088 0.912 18 C 0.144 3.856 19 N -0.730 5.730 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.125 3.875 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.023 0.977 43 H 0.041 0.959 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.112 0.888 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 7.824 -22.341 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 C -0.213 4.213 4 C -0.212 4.212 5 C 0.308 3.692 6 O -0.399 6.399 7 N -0.346 5.346 8 C -0.036 4.036 9 C -0.175 4.175 10 C -0.145 4.145 11 H 0.134 0.866 12 C 0.401 3.599 13 F -0.153 7.153 14 F -0.172 7.172 15 F -0.161 7.161 16 C -0.125 4.125 17 H 0.106 0.894 18 C 0.016 3.984 19 N -0.375 5.375 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.003 3.997 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.130 0.870 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.329 7.490 -21.754 23.411 hybrid contribution 0.253 -0.210 1.075 1.124 sum 4.582 7.280 -20.679 22.397 Atomic orbital electron populations 1.21651 0.91855 1.02958 1.01987 1.20782 0.98158 0.96268 0.93768 1.22226 1.01992 0.93968 1.03152 1.22226 1.01922 1.00968 0.96118 1.20576 0.81732 0.79671 0.87207 1.90769 1.54598 1.46312 1.48183 1.48132 1.05381 1.61722 1.19386 1.22398 0.91329 0.97621 0.92254 1.22123 0.99808 0.99381 0.96157 1.22554 0.96457 0.98147 0.97361 0.86617 1.20575 0.80933 0.81244 0.77186 1.93181 1.80447 1.80102 1.61586 1.93141 1.70231 1.89357 1.64446 1.93183 1.77902 1.58701 1.86351 1.21785 0.94949 1.00806 0.94976 0.89355 1.21098 0.92429 0.96868 0.88046 1.42355 1.04437 1.73148 1.17606 1.19232 0.92762 1.31385 0.93799 0.91104 1.24748 0.95256 1.01977 0.98822 1.69684 0.98636 1.53000 1.36427 0.86136 0.77411 0.78798 0.83959 1.20555 1.21895 1.21881 1.21648 0.98940 0.94437 0.84634 0.91792 0.92202 0.91841 0.90861 0.91407 0.91745 0.91894 0.91378 0.90943 0.90939 0.86529 0.89246 0.89969 0.95914 0.94141 0.78087 0.93517 0.87008 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 7.77 37.16 0.29 -1.04 16 2 C -0.09 -0.87 0.75 -155.66 -0.12 -0.99 16 3 C -0.16 -1.26 8.15 37.15 0.30 -0.96 16 4 C -0.16 -1.15 8.13 37.16 0.30 -0.85 16 5 C 0.52 7.53 6.48 -10.99 -0.07 7.46 16 6 O -0.52 -10.28 15.42 5.56 0.09 -10.19 16 7 N -0.61 -7.85 2.97 -172.77 -0.51 -8.36 16 8 C 0.09 0.73 4.31 -3.71 -0.02 0.71 16 9 C -0.14 -1.18 4.80 -26.45 -0.13 -1.31 16 10 C -0.13 -1.45 1.79 -90.42 -0.16 -1.61 16 11 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 12 C 0.45 5.96 2.53 37.15 0.09 6.06 16 13 F -0.17 -2.63 14.12 2.25 0.03 -2.60 16 14 F -0.19 -2.24 16.49 2.25 0.04 -2.21 16 15 F -0.18 -2.64 16.35 2.25 0.04 -2.60 16 16 C -0.11 -1.65 1.77 -90.50 -0.16 -1.81 16 17 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 18 C 0.14 2.86 4.90 -4.04 -0.02 2.84 16 19 N -0.73 -18.71 5.34 -59.91 -0.32 -19.03 16 20 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 24 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 C 0.13 2.00 5.44 -3.71 -0.02 1.98 16 29 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.07 0.50 4.16 -51.93 -0.22 0.28 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.43 4.75 -51.93 -0.25 0.19 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.12 0.75 2.32 -51.93 -0.12 0.63 16 40 H 0.09 0.58 7.60 -51.93 -0.39 0.19 16 41 H 0.08 0.77 7.66 -51.93 -0.40 0.37 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.84 5.50 -51.93 -0.29 0.56 16 44 H 0.38 10.50 6.59 -40.82 -0.27 10.24 16 45 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.11 2.29 5.96 -51.93 -0.31 1.98 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -34.11 364.79 -6.23 -40.34 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.83 Total: 6.45 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 0.05 Total: 3.02 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.11 Total: -55.62 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.11 Total: -7.41 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.11 -6.23 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692152836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.616 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds