Wall clock time and date at job start Sat Apr 11 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47452 * 2 1 4 4 C 1.53005 * 109.47080 * 240.00357 * 2 1 3 5 5 C 1.50694 * 109.47623 * 120.00497 * 2 1 3 6 6 O 1.21289 * 119.99978 * 357.93677 * 5 2 1 7 7 N 1.34775 * 120.00584 * 178.21467 * 5 2 1 8 8 C 1.46934 * 120.62751 * 5.03489 * 7 5 2 9 9 C 1.53186 * 108.77565 * 233.58757 * 8 7 5 10 10 C 1.53038 * 109.31367 * 305.36275 * 9 8 7 11 11 H 1.08996 * 109.46474 * 301.34498 * 10 9 8 12 12 C 1.53004 * 109.45811 * 181.37113 * 10 9 8 13 13 F 1.39902 * 109.46823 * 66.97656 * 12 10 9 14 14 F 1.39907 * 109.46951 * 186.97149 * 12 10 9 15 15 F 1.39898 * 109.47338 * 306.97556 * 12 10 9 16 16 C 1.53043 * 109.53781 * 61.36976 * 10 9 8 17 17 H 1.08998 * 109.50103 * 178.65041 * 16 10 9 18 18 C 1.53005 * 109.49846 * 58.58075 * 16 10 9 19 19 N 1.46495 * 109.47081 * 179.16938 * 18 16 10 20 20 C 1.36939 * 119.99758 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00290 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99782 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00181 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99855 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.46942 * 90.00122 * 24 22 20 26 26 H 1.48498 * 109.46908 * 210.00563 * 24 22 20 27 27 H 1.48504 * 109.47004 * 330.00346 * 24 22 20 28 28 C 1.46924 * 120.63739 * 184.75959 * 7 5 2 29 29 H 1.09004 * 109.46939 * 299.99505 * 1 2 3 30 30 H 1.08997 * 109.47238 * 59.99899 * 1 2 3 31 31 H 1.08999 * 109.46661 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47252 * 184.20715 * 3 2 1 33 33 H 1.09001 * 109.47137 * 304.21423 * 3 2 1 34 34 H 1.08998 * 109.46808 * 64.20487 * 3 2 1 35 35 H 1.09006 * 109.47007 * 295.97427 * 4 2 1 36 36 H 1.09004 * 109.46885 * 55.97199 * 4 2 1 37 37 H 1.08991 * 109.47380 * 175.97147 * 4 2 1 38 38 H 1.08998 * 109.58770 * 353.37993 * 8 7 5 39 39 H 1.09005 * 109.58060 * 113.65838 * 8 7 5 40 40 H 1.09000 * 109.49735 * 65.32151 * 9 8 7 41 41 H 1.09002 * 109.49397 * 185.38300 * 9 8 7 42 42 H 1.09004 * 109.47293 * 299.17189 * 18 16 10 43 43 H 1.09004 * 109.46568 * 59.16727 * 18 16 10 44 44 H 0.96998 * 120.00230 * 359.97438 * 19 18 16 45 45 H 0.96990 * 120.00256 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.58940 * 246.20375 * 28 7 5 47 47 H 1.09008 * 109.57981 * 6.62634 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 8 1.2450 -1.1387 2.0474 7 7 3.3570 -0.8652 1.4256 8 6 4.3257 -0.2524 0.5064 9 6 5.2826 -1.3376 0.0031 10 6 5.9159 -2.0492 1.2009 11 1 6.4477 -1.3228 1.8153 12 6 6.8981 -3.1110 0.7020 13 9 7.9824 -2.4861 0.0768 14 9 7.3571 -3.8675 1.7856 15 9 6.2527 -3.9502 -0.2126 16 6 4.8218 -2.7192 2.0353 17 1 5.2756 -3.2458 2.8748 18 6 4.0521 -3.7140 1.1641 19 7 3.0179 -4.3694 1.9685 20 6 2.1982 -5.3063 1.3981 21 1 2.3138 -5.5619 0.3551 22 6 1.2186 -5.9277 2.1605 23 7 1.0773 -5.6160 3.4314 24 14 0.1008 -7.2064 1.3826 25 1 0.7137 -8.5515 1.5244 26 1 -1.2191 -7.1895 2.0628 27 1 -0.0807 -6.8945 -0.0580 28 6 3.8598 -1.6448 2.5649 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1274 1.4434 -0.0754 33 1 1.6164 1.9777 -0.8498 34 1 1.7396 1.9341 0.9253 35 1 1.7367 -1.7676 -1.2140 36 1 1.6189 -0.2506 -2.1378 37 1 3.1275 -0.6591 -1.2862 38 1 3.7983 0.1903 -0.3385 39 1 4.8889 0.5197 1.0308 40 1 4.7300 -2.0593 -0.5984 41 1 6.0640 -0.8805 -0.6039 42 1 3.5853 -3.1844 0.3336 43 1 4.7403 -4.4647 0.7754 44 1 2.9143 -4.1402 2.9053 45 1 0.3926 -6.0499 3.9639 46 1 4.3874 -0.9858 3.2543 47 1 3.0246 -2.1213 3.0785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692152837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:47 Heat of formation + Delta-G solvation = -162.688852 kcal Electronic energy + Delta-G solvation = -32878.789225 eV Core-core repulsion = 28261.538465 eV Total energy + Delta-G solvation = -4617.250760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.04375 -47.53431 -47.44513 -40.71847 -38.05008 -35.80559 -34.44210 -33.25950 -31.70042 -29.95694 -27.50183 -27.38888 -27.20662 -25.65122 -23.89697 -23.28987 -22.13060 -21.84693 -19.46416 -18.75924 -18.26917 -18.17688 -17.34927 -16.82869 -16.35055 -15.78433 -15.42880 -15.05381 -14.57160 -14.37969 -14.29909 -14.17578 -14.10507 -13.91019 -13.83584 -13.66791 -13.56890 -13.47267 -13.11256 -12.72635 -12.64856 -12.50851 -12.31411 -12.25135 -12.12161 -11.80859 -11.66304 -11.63962 -11.26686 -10.96706 -10.90324 -10.89106 -10.66676 -10.62118 -10.42587 -10.26201 -9.94811 -9.58111 -9.20434 -8.73869 -8.39698 -6.77965 -5.64215 -2.91789 2.81709 3.01859 3.21377 3.50558 3.54880 3.57100 3.84590 3.99371 4.09805 4.45248 4.63148 4.66371 4.74033 4.80546 4.87660 4.95460 5.04724 5.15825 5.20020 5.28148 5.35653 5.44168 5.52329 5.55330 5.60117 5.66455 5.69273 5.80313 5.81849 5.87679 5.93171 5.96999 6.07185 6.16415 6.18089 6.29862 6.43542 6.51942 6.69498 6.78148 6.86095 7.66910 7.79380 8.53490 8.58149 9.64862 10.21988 10.56064 11.58667 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008111 B = 0.006461 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.353325 B = 4332.696069 C = 6769.899009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.154 4.154 4 C -0.155 4.155 5 C 0.525 3.475 6 O -0.510 6.510 7 N -0.608 5.608 8 C 0.090 3.910 9 C -0.142 4.142 10 C -0.122 4.122 11 H 0.112 0.888 12 C 0.454 3.546 13 F -0.191 7.191 14 F -0.181 7.181 15 F -0.171 7.171 16 C -0.112 4.112 17 H 0.094 0.906 18 C 0.147 3.853 19 N -0.724 5.724 20 C -0.234 4.234 21 H 0.066 0.934 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.125 3.875 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.035 0.965 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.060 0.940 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.724 16.642 -8.504 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.211 4.211 4 C -0.212 4.212 5 C 0.312 3.688 6 O -0.383 6.383 7 N -0.342 5.342 8 C -0.033 4.033 9 C -0.180 4.180 10 C -0.142 4.142 11 H 0.130 0.870 12 C 0.400 3.600 13 F -0.172 7.172 14 F -0.162 7.162 15 F -0.153 7.153 16 C -0.132 4.132 17 H 0.112 0.888 18 C 0.019 3.981 19 N -0.369 5.369 20 C -0.366 4.366 21 H 0.084 0.916 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.734 3.266 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.209 1.209 28 C 0.002 3.998 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.041 0.959 43 H 0.052 0.948 44 H 0.217 0.783 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.197 16.268 -8.173 20.866 hybrid contribution -0.292 -0.962 -0.156 1.018 sum 9.904 15.305 -8.329 20.043 Atomic orbital electron populations 1.21640 0.91968 1.03320 1.01472 1.20752 0.98111 0.95852 0.94114 1.22220 1.01752 0.94319 1.02780 1.22206 1.01614 1.01656 0.95750 1.20431 0.81636 0.79431 0.87316 1.90790 1.54345 1.47893 1.45313 1.47873 1.05320 1.52862 1.28162 1.22344 0.91277 0.94690 0.94993 1.22125 0.99791 0.99485 0.96562 1.22444 0.95927 0.95835 0.99969 0.87035 1.20623 0.80749 0.82985 0.75673 1.93149 1.58173 1.82356 1.83561 1.93186 1.89884 1.78167 1.55011 1.93160 1.80568 1.73439 1.68088 1.21900 0.94669 0.97347 0.99287 0.88766 1.21067 0.91258 0.92640 0.93124 1.42244 1.37216 1.47083 1.10347 1.19102 1.09589 1.13384 0.94486 0.91583 1.24680 0.99622 1.00486 0.95870 1.69646 1.36262 1.45722 1.06082 0.86251 0.80431 0.81698 0.78175 1.21879 1.21841 1.20932 1.21649 0.98714 0.91782 0.87611 0.92093 0.92442 0.91484 0.91073 0.91575 0.92129 0.91278 0.91717 0.91131 0.86577 0.91382 0.88996 0.89841 0.95934 0.94755 0.78314 0.93666 0.92141 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 7.77 37.16 0.29 -1.40 16 2 C -0.09 -1.06 0.75 -155.66 -0.12 -1.18 16 3 C -0.15 -1.38 8.12 37.16 0.30 -1.07 16 4 C -0.16 -1.74 8.15 37.16 0.30 -1.44 16 5 C 0.52 8.74 6.48 -10.99 -0.07 8.67 16 6 O -0.51 -11.30 15.42 5.55 0.09 -11.22 16 7 N -0.61 -8.51 2.38 -172.50 -0.41 -8.92 16 8 C 0.09 0.85 4.32 -3.71 -0.02 0.84 16 9 C -0.14 -1.41 4.43 -26.62 -0.12 -1.53 16 10 C -0.12 -1.40 2.02 -90.58 -0.18 -1.59 16 11 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 12 C 0.45 5.96 2.59 37.16 0.10 6.05 16 13 F -0.19 -2.29 17.05 2.25 0.04 -2.25 16 14 F -0.18 -2.65 16.50 2.25 0.04 -2.61 16 15 F -0.17 -2.61 13.39 2.25 0.03 -2.58 16 16 C -0.11 -1.73 2.11 -90.27 -0.19 -1.92 16 17 H 0.09 1.50 7.60 -51.93 -0.39 1.10 16 18 C 0.15 2.94 4.53 -4.04 -0.02 2.92 16 19 N -0.72 -18.65 5.27 -59.90 -0.32 -18.97 16 20 C -0.23 -6.78 9.99 -15.06 -0.15 -6.93 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 24 Si 0.90 23.43 29.55 -169.99 -5.02 18.40 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.12 1.94 5.75 -3.49 -0.02 1.92 16 29 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 32 H 0.07 0.52 4.75 -51.93 -0.25 0.27 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.67 4.26 -51.93 -0.22 0.45 16 38 H 0.12 0.94 2.28 -51.93 -0.12 0.82 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.10 5.58 -51.93 -0.29 0.81 16 41 H 0.08 0.63 7.96 -51.93 -0.41 0.22 16 42 H 0.02 0.47 6.00 -51.93 -0.31 0.15 16 43 H 0.03 0.73 5.44 -51.93 -0.28 0.45 16 44 H 0.38 10.46 6.60 -40.82 -0.27 10.19 16 45 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.11 2.29 5.73 -51.92 -0.30 1.99 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -34.78 360.12 -6.01 -40.79 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.61 Total: 7.45 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.01 Total: 2.92 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.00 Total: -56.34 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.44 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.78 -6.01 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692152837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.898 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds