Wall clock time and date at job start Sat Apr 11 2020 04:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47211 * 2 1 4 4 C 1.52999 * 109.47218 * 239.99880 * 2 1 3 5 5 C 1.50702 * 109.47166 * 120.00098 * 2 1 3 6 6 O 1.21278 * 120.00314 * 352.36291 * 5 2 1 7 7 N 1.34781 * 119.99912 * 172.37109 * 5 2 1 8 8 C 1.46924 * 120.62943 * 4.97132 * 7 5 2 9 9 C 1.53200 * 108.77347 * 126.41446 * 8 7 5 10 10 C 1.53043 * 109.30971 * 54.63491 * 9 8 7 11 11 H 1.09000 * 109.46409 * 58.65437 * 10 9 8 12 12 C 1.53000 * 109.44708 * 178.61914 * 10 9 8 13 13 F 1.39895 * 109.47372 * 173.69242 * 12 10 9 14 14 F 1.39895 * 109.47204 * 293.69575 * 12 10 9 15 15 F 1.39906 * 109.46930 * 53.69614 * 12 10 9 16 16 C 1.53040 * 109.53936 * 298.63267 * 10 9 8 17 17 H 1.08996 * 109.49938 * 181.32425 * 16 10 9 18 18 C 1.53005 * 109.49643 * 301.41648 * 16 10 9 19 19 N 1.46497 * 109.47261 * 183.18964 * 18 16 10 20 20 C 1.36936 * 120.00191 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00001 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99868 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99735 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99893 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47349 * 89.99945 * 24 22 20 26 26 H 1.48508 * 109.46738 * 209.99466 * 24 22 20 27 27 H 1.48501 * 109.47427 * 329.99192 * 24 22 20 28 28 C 1.46927 * 120.62732 * 184.99200 * 7 5 2 29 29 H 1.08999 * 109.47011 * 299.99642 * 1 2 3 30 30 H 1.08994 * 109.47153 * 60.00348 * 1 2 3 31 31 H 1.09002 * 109.46772 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47653 * 172.57899 * 3 2 1 33 33 H 1.09006 * 109.46754 * 292.58059 * 3 2 1 34 34 H 1.08997 * 109.47086 * 52.57732 * 3 2 1 35 35 H 1.09003 * 109.47293 * 316.64846 * 4 2 1 36 36 H 1.08998 * 109.47224 * 76.64892 * 4 2 1 37 37 H 1.08997 * 109.47250 * 196.64571 * 4 2 1 38 38 H 1.08995 * 109.58510 * 246.19897 * 8 7 5 39 39 H 1.09000 * 109.58911 * 6.48472 * 8 7 5 40 40 H 1.08994 * 109.49806 * 294.68077 * 9 8 7 41 41 H 1.08996 * 109.49474 * 174.58089 * 9 8 7 42 42 H 1.09000 * 109.47317 * 303.19434 * 18 16 10 43 43 H 1.08997 * 109.47071 * 63.18893 * 18 16 10 44 44 H 0.97007 * 119.99629 * 359.97438 * 19 18 16 45 45 H 0.97001 * 120.00190 * 180.02562 * 23 22 20 46 46 H 1.09007 * 109.58140 * 113.80022 * 28 7 5 47 47 H 1.08995 * 109.59042 * 353.37595 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2531 -1.0489 2.0959 7 7 3.3477 -0.9695 1.3692 8 6 4.3169 -0.4711 0.3838 9 6 5.4099 0.3110 1.1192 10 6 6.0198 -0.5743 2.2085 11 1 6.4311 -1.4763 1.7554 12 6 7.1353 0.1918 2.9222 13 9 7.5957 -0.5594 4.0088 14 9 8.1899 0.4177 2.0312 15 9 6.6403 1.4180 3.3793 16 6 4.9380 -0.9597 3.2200 17 1 5.3779 -1.5707 4.0082 18 6 4.3358 0.3071 3.8313 19 7 3.3544 -0.0631 4.8541 20 6 2.6820 0.9112 5.5422 21 1 2.8753 1.9526 5.3313 22 6 1.7517 0.5604 6.5110 23 7 1.1050 1.4969 7.1721 24 14 1.4179 -1.2408 6.8764 25 1 2.3374 -1.7079 7.9448 26 1 0.0122 -1.4020 7.3278 27 1 1.6383 -2.0444 5.6473 28 6 3.8396 -1.7561 2.5086 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1219 1.4455 0.1327 33 1 1.7891 1.9166 -0.9490 34 1 1.5724 1.9932 0.8161 35 1 1.4566 -1.6281 -1.4089 36 1 1.9374 -0.0662 -2.1143 37 1 3.0894 -0.9834 -1.1145 38 1 4.7634 -1.3118 -0.1470 39 1 3.8118 0.1832 -0.3269 40 1 4.9764 1.2014 1.5744 41 1 6.1857 0.6042 0.4120 42 1 5.1273 0.9029 4.2858 43 1 3.8454 0.8892 3.0511 44 1 3.1811 -0.9985 5.0438 45 1 0.4553 1.2519 7.8493 46 1 4.2473 -2.7017 2.1509 47 1 3.0202 -1.9477 3.2013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692152839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:54 Heat of formation + Delta-G solvation = -159.030404 kcal Electronic energy + Delta-G solvation = -32882.178474 eV Core-core repulsion = 28265.086356 eV Total energy + Delta-G solvation = -4617.092118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.10957 -47.59524 -47.51277 -40.85505 -38.19289 -35.91865 -34.62191 -33.37361 -31.79556 -30.35631 -27.62138 -27.48117 -27.32489 -25.96484 -23.95390 -23.24944 -22.11078 -21.74998 -19.64722 -18.86707 -18.33490 -18.25546 -17.70137 -17.02581 -16.41385 -15.85910 -15.53830 -15.14337 -14.60665 -14.47717 -14.39227 -14.31294 -14.07253 -14.03249 -13.91420 -13.81936 -13.63234 -13.44889 -13.09899 -12.95995 -12.83699 -12.66934 -12.40619 -12.29460 -12.18506 -11.88160 -11.76576 -11.67461 -11.35195 -11.24257 -11.03838 -10.99608 -10.76829 -10.66484 -10.49677 -10.40178 -10.00478 -9.47110 -9.32518 -8.75067 -8.54164 -7.08538 -5.64909 -2.98925 2.73583 2.88635 3.06913 3.48019 3.54019 3.55456 3.77281 3.90904 4.01438 4.37119 4.53483 4.65984 4.69170 4.72383 4.79344 4.85784 4.91422 5.03071 5.08031 5.19849 5.23218 5.37464 5.43866 5.47560 5.51787 5.60160 5.61969 5.67026 5.72230 5.76837 5.82440 5.85163 5.91853 5.97794 6.02038 6.21506 6.22177 6.33919 6.56346 6.68449 6.74202 7.52328 8.09021 8.44252 8.53195 9.32273 10.05445 10.24109 11.53796 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.007896 B = 0.007015 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3545.193560 B = 3990.681934 C = 6540.146454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.152 4.152 4 C -0.160 4.160 5 C 0.524 3.476 6 O -0.511 6.511 7 N -0.610 5.610 8 C 0.096 3.904 9 C -0.142 4.142 10 C -0.121 4.121 11 H 0.113 0.887 12 C 0.454 3.546 13 F -0.181 7.181 14 F -0.190 7.190 15 F -0.169 7.169 16 C -0.117 4.117 17 H 0.095 0.905 18 C 0.148 3.852 19 N -0.748 5.748 20 C -0.234 4.234 21 H 0.087 0.913 22 C 0.006 3.994 23 N -0.937 5.937 24 Si 0.882 3.118 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.274 1.274 28 C 0.123 3.877 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.030 0.970 44 H 0.359 0.641 45 H 0.257 0.743 46 H 0.063 0.937 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 -5.246 -21.163 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.209 4.209 4 C -0.217 4.217 5 C 0.311 3.689 6 O -0.384 6.384 7 N -0.345 5.345 8 C -0.027 4.027 9 C -0.180 4.180 10 C -0.141 4.141 11 H 0.131 0.869 12 C 0.400 3.600 13 F -0.163 7.163 14 F -0.171 7.171 15 F -0.150 7.150 16 C -0.137 4.137 17 H 0.113 0.887 18 C 0.021 3.979 19 N -0.394 5.394 20 C -0.364 4.364 21 H 0.105 0.895 22 C -0.189 4.189 23 N -0.585 5.585 24 Si 0.713 3.287 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.200 1.200 28 C 0.000 4.000 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.192 0.808 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.943 -5.190 -20.589 23.445 hybrid contribution 0.032 -1.116 0.558 1.248 sum 9.975 -6.306 -20.031 23.249 Atomic orbital electron populations 1.21671 0.91934 1.02575 1.02292 1.20752 0.98114 0.96454 0.93476 1.22152 1.01796 0.93819 1.03148 1.22342 1.02386 1.00763 0.96197 1.20517 0.81606 0.79044 0.87759 1.90782 1.54703 1.51046 1.41870 1.47905 1.06198 1.54781 1.25596 1.22224 0.90209 0.98656 0.91601 1.22137 0.99091 0.99598 0.97217 1.22421 0.93922 0.99968 0.97789 0.86903 1.20592 0.83014 0.78793 0.77628 1.93182 1.90053 1.76127 1.56912 1.93153 1.60557 1.95084 1.68315 1.93159 1.86657 1.45915 1.89277 1.21872 0.94597 1.00587 0.96636 0.88714 1.21116 0.92696 0.92491 0.91592 1.42594 1.47730 1.05022 1.44008 1.18951 1.15377 0.89259 1.12812 0.89520 1.24600 0.98792 0.96683 0.98841 1.69700 1.29906 1.30989 1.27922 0.86554 0.77346 0.86913 0.77866 1.21409 1.21891 1.20025 1.21554 0.97718 0.92103 0.88583 0.91332 0.92275 0.92309 0.91316 0.91502 0.91245 0.92136 0.91511 0.90774 0.91181 0.86878 0.88929 0.89575 0.93570 0.95211 0.80803 0.93257 0.91852 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 7.73 37.16 0.29 -1.29 16 2 C -0.08 -0.99 0.75 -155.66 -0.12 -1.11 16 3 C -0.15 -1.61 8.11 37.16 0.30 -1.31 16 4 C -0.16 -1.31 8.09 37.16 0.30 -1.01 16 5 C 0.52 8.27 6.48 -10.98 -0.07 8.20 16 6 O -0.51 -10.87 15.40 5.56 0.09 -10.79 16 7 N -0.61 -8.01 2.34 -172.77 -0.40 -8.42 16 8 C 0.10 0.84 3.77 -3.71 -0.01 0.82 16 9 C -0.14 -1.33 4.59 -26.61 -0.12 -1.46 16 10 C -0.12 -1.30 2.02 -90.58 -0.18 -1.48 16 11 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 12 C 0.45 5.70 2.60 37.16 0.10 5.79 16 13 F -0.18 -2.52 16.53 2.25 0.04 -2.49 16 14 F -0.19 -2.18 17.02 2.25 0.04 -2.14 16 15 F -0.17 -2.53 13.33 2.25 0.03 -2.50 16 16 C -0.12 -1.69 2.08 -90.50 -0.19 -1.88 16 17 H 0.09 1.37 7.61 -51.93 -0.40 0.97 16 18 C 0.15 2.88 4.55 -4.04 -0.02 2.86 16 19 N -0.75 -18.42 5.07 -59.91 -0.30 -18.73 16 20 C -0.23 -6.94 10.47 -15.06 -0.16 -7.09 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.94 -30.72 13.97 55.49 0.78 -29.94 16 24 Si 0.88 23.64 27.74 -169.99 -4.71 18.93 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.27 -7.06 6.52 56.52 0.37 -6.69 16 28 C 0.12 1.77 5.75 -3.71 -0.02 1.74 16 29 H 0.07 1.03 8.02 -51.93 -0.42 0.61 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.66 4.97 -51.93 -0.26 0.40 16 33 H 0.07 0.54 8.00 -51.93 -0.42 0.12 16 34 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 36 H 0.07 0.43 7.93 -51.93 -0.41 0.02 16 37 H 0.07 0.53 4.31 -51.93 -0.22 0.30 16 38 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 39 H 0.11 0.85 2.93 -51.93 -0.15 0.70 16 40 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 41 H 0.09 0.60 7.94 -51.93 -0.41 0.19 16 42 H 0.05 0.95 5.24 -51.93 -0.27 0.68 16 43 H 0.03 0.60 6.07 -51.93 -0.32 0.29 16 44 H 0.36 8.76 4.61 -40.82 -0.19 8.57 16 45 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 46 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 47 H 0.11 1.98 5.82 -51.93 -0.30 1.68 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -36.28 356.91 -5.68 -41.96 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.60 Total: 5.86 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 0.00 Total: 2.88 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.07 Total: -57.09 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.11 Total: -7.12 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.71 Total: 18.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.28 -5.68 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692152839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.071 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds