Wall clock time and date at job start Sat Apr 11 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99747 * 2 1 4 4 C 1.53004 * 109.46646 * 177.44959 * 3 2 1 5 5 N 1.46898 * 109.47228 * 67.80460 * 4 3 2 6 6 C 1.46899 * 110.99742 * 285.91742 * 5 4 3 7 7 C 1.50702 * 109.47669 * 94.15869 * 6 5 4 8 8 H 1.08004 * 119.99336 * 3.61262 * 7 6 5 9 9 C 1.37866 * 120.00410 * 183.61324 * 7 6 5 10 10 N 1.31512 * 120.00220 * 7.57258 * 9 7 6 11 11 Si 1.86804 * 119.99871 * 187.56807 * 9 7 6 12 12 H 1.48498 * 109.47475 * 3.61227 * 11 9 7 13 13 H 1.48504 * 109.46870 * 123.61419 * 11 9 7 14 14 H 1.48499 * 109.47159 * 243.60860 * 11 9 7 15 15 C 1.38583 * 111.00399 * 161.96439 * 5 4 3 16 16 N 1.31222 * 126.46907 * 17.74485 * 15 5 4 17 17 N 1.28525 * 109.85474 * 180.02562 * 16 15 5 18 18 C 1.30290 * 110.05605 * 359.97438 * 17 16 15 19 19 C 1.50702 * 126.34530 * 179.97438 * 18 17 16 20 20 N 1.36447 * 126.47447 * 198.03801 * 15 5 4 21 21 C 1.46497 * 127.13983 * 359.97438 * 20 15 5 22 22 C 1.50705 * 109.47244 * 264.39685 * 21 20 15 23 23 N 1.33309 * 126.54808 * 276.44809 * 22 21 20 24 24 N 1.29002 * 107.35249 * 179.83272 * 23 22 21 25 25 N 1.28779 * 108.72507 * 0.43297 * 24 23 22 26 26 C 1.46501 * 125.45146 * 179.72499 * 25 24 23 27 27 N 1.28879 * 109.10411 * 359.72531 * 25 24 23 28 28 H 1.08998 * 109.47050 * 303.69909 * 1 2 3 29 29 H 1.09000 * 109.46752 * 63.70139 * 1 2 3 30 30 H 1.08999 * 109.47101 * 183.70116 * 1 2 3 31 31 H 1.08993 * 109.47539 * 57.44879 * 3 2 1 32 32 H 1.09002 * 109.47123 * 297.44553 * 3 2 1 33 33 H 1.08994 * 109.47137 * 307.80021 * 4 3 2 34 34 H 1.09003 * 109.46854 * 187.79555 * 4 3 2 35 35 H 1.09010 * 109.47027 * 214.15535 * 6 5 4 36 36 H 1.08999 * 109.47022 * 334.15657 * 6 5 4 37 37 H 0.97003 * 120.00553 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.46917 * 90.02651 * 19 18 17 39 39 H 1.09001 * 109.47634 * 210.02531 * 19 18 17 40 40 H 1.08998 * 109.47718 * 330.02967 * 19 18 17 41 41 H 1.09003 * 109.46965 * 24.39404 * 21 20 15 42 42 H 1.09000 * 109.47417 * 144.39472 * 21 20 15 43 43 H 1.08999 * 109.47203 * 270.00017 * 26 25 24 44 44 H 1.09003 * 109.47033 * 29.99586 * 26 25 24 45 45 H 1.08988 * 109.47319 * 149.99919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5341 1.1852 0.0642 5 7 4.0325 0.6020 -1.1886 6 6 3.7418 -0.8365 -1.2518 7 6 2.4459 -1.0553 -1.9894 8 1 1.9233 -0.2157 -2.4234 9 6 1.9276 -2.3271 -2.1100 10 7 2.4802 -3.3270 -1.4585 11 14 0.4402 -2.6301 -3.1988 12 1 0.0636 -1.3681 -3.8849 13 1 0.7707 -3.6646 -4.2116 14 1 -0.6961 -3.0985 -2.3654 15 6 5.3887 0.8418 -1.3432 16 7 6.2304 1.1965 -0.4010 17 7 7.4082 1.3337 -0.8969 18 6 7.3880 1.0762 -2.1740 19 6 8.5651 1.1257 -3.1137 20 7 6.0997 0.7592 -2.5048 21 6 5.5895 0.4014 -3.8306 22 6 5.8133 -1.0687 -4.0752 23 7 6.9338 -1.6380 -4.5198 24 7 6.7188 -2.9081 -4.5891 25 7 5.5095 -3.1437 -4.2142 26 6 4.8797 -4.4652 -4.1576 27 7 4.9419 -2.0310 -3.8967 28 1 -0.3633 0.5702 0.8550 29 1 -0.3633 0.4553 -0.9213 30 1 -0.3633 -1.0255 0.0663 31 1 1.6529 1.8623 0.8661 32 1 1.7252 1.8301 -0.9120 33 1 3.8131 0.5436 0.8999 34 1 3.9711 2.1741 0.2036 35 1 4.5491 -1.3477 -1.7764 36 1 3.6560 -1.2346 -0.2407 37 1 2.1157 -4.2219 -1.5437 38 1 9.0469 0.1485 -3.1444 39 1 8.2214 1.3928 -4.1130 40 1 9.2786 1.8716 -2.7635 41 1 4.5228 0.6197 -3.8804 42 1 6.1147 0.9802 -4.5904 43 1 4.4011 -4.6808 -5.1128 44 1 5.6382 -5.2207 -3.9525 45 1 4.1313 -4.4774 -3.3654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698059253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:57 Heat of formation + Delta-G solvation = 201.039855 kcal Electronic energy + Delta-G solvation = -31625.303346 eV Core-core repulsion = 27526.726946 eV Total energy + Delta-G solvation = -4098.576400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.98992 -42.42574 -37.73894 -35.92926 -35.59555 -34.28727 -32.61915 -32.55441 -31.40733 -29.32526 -28.82100 -27.69472 -26.88094 -25.96345 -25.26921 -22.89970 -22.59256 -22.29973 -21.99486 -20.21861 -19.76968 -17.41230 -17.26438 -16.76593 -16.33904 -15.96973 -15.82370 -15.25325 -14.80389 -14.41374 -14.27882 -14.17821 -13.86405 -13.55836 -13.45347 -13.24061 -12.90895 -12.73105 -12.57507 -12.44583 -12.34056 -12.09694 -11.54706 -11.45778 -11.26542 -11.05714 -11.01937 -10.83332 -10.76903 -10.57561 -10.42685 -10.13702 -10.04902 -9.94841 -9.90982 -9.75298 -9.45463 -8.75913 -8.68940 -8.26484 -7.49347 -5.92562 -3.80463 1.61471 2.03000 2.28345 2.41226 3.00264 3.23055 3.33383 3.36152 3.39330 4.07684 4.36315 4.43032 4.60359 4.66095 4.78207 4.91906 5.13134 5.24501 5.29593 5.43784 5.49869 5.63530 5.66097 5.71307 5.79722 5.83209 5.85769 5.90870 5.98373 6.01315 6.09921 6.15280 6.17672 6.32201 6.43078 6.47610 6.50573 6.58196 6.96205 7.22151 7.30026 7.76075 7.94445 8.11263 8.12715 8.46384 8.70000 9.09037 9.29579 9.71415 11.19535 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.006923 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.288629 B = 4043.694712 C = 6382.976129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.328 6.328 3 C 0.069 3.931 4 C 0.084 3.916 5 N -0.458 5.458 6 C 0.205 3.795 7 C -0.428 4.428 8 H 0.057 0.943 9 C 0.068 3.932 10 N -0.902 5.902 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.291 1.291 14 H -0.290 1.290 15 C 0.389 3.611 16 N -0.343 5.343 17 N -0.291 5.291 18 C 0.166 3.834 19 C -0.056 4.056 20 N -0.475 5.475 21 C 0.222 3.778 22 C 0.118 3.882 23 N -0.278 5.278 24 N -0.083 5.083 25 N -0.131 5.131 26 C 0.093 3.907 27 N -0.213 5.213 28 H 0.020 0.980 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 3.605 -6.085 7.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.245 6.245 3 C -0.009 4.009 4 C -0.044 4.044 5 N -0.183 5.183 6 C 0.082 3.918 7 C -0.467 4.467 8 H 0.075 0.925 9 C -0.130 4.130 10 N -0.545 5.545 11 Si 0.704 3.296 12 H -0.201 1.201 13 H -0.218 1.218 14 H -0.216 1.216 15 C 0.033 3.967 16 N -0.188 5.188 17 N -0.131 5.131 18 C -0.102 4.102 19 C -0.115 4.115 20 N -0.172 5.172 21 C 0.095 3.905 22 C -0.166 4.166 23 N -0.151 5.151 24 N -0.075 5.075 25 N -0.044 5.044 26 C -0.047 4.047 27 N -0.064 5.064 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.113 0.887 44 H 0.123 0.877 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.302 3.239 -5.251 6.998 hybrid contribution -1.742 -0.619 -1.139 2.172 sum 1.560 2.620 -6.390 7.080 Atomic orbital electron populations 1.22484 0.83860 1.01596 0.97860 1.88572 1.17031 1.24333 1.94591 1.22347 0.92803 0.86947 0.98827 1.21960 0.93547 0.99536 0.89342 1.59072 1.02778 1.20887 1.35581 1.20110 0.97709 0.75889 0.98076 1.20636 1.04259 0.92118 1.29713 0.92527 1.24557 0.96207 0.96272 0.95973 1.70009 1.41972 0.99887 1.42627 0.86843 0.83955 0.77890 0.80923 1.20111 1.21778 1.21637 1.23048 0.92049 0.99321 0.82318 1.74647 0.95908 1.24781 1.23444 1.73847 1.14954 1.19102 1.05148 1.24645 0.85699 1.04841 0.95006 1.20089 0.91931 1.03988 0.95520 1.46033 1.08761 1.53763 1.08653 1.19685 1.03858 0.84803 0.82175 1.25516 0.88057 0.98576 1.04415 1.75677 1.23275 0.98390 1.17730 1.78852 1.01277 1.10731 1.16680 1.50105 1.07110 1.09253 1.37915 1.22511 1.00204 0.75450 1.06569 1.75392 1.24661 0.91329 1.15041 0.96165 0.95237 0.90594 0.94415 0.93346 0.92811 0.90216 0.95758 0.96019 0.93904 0.89873 0.90715 0.89407 0.84778 0.86610 0.88693 0.87687 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.01 101.05 1.11 1.80 16 2 O -0.33 -6.79 6.55 -35.23 -0.23 -7.02 16 3 C 0.07 1.21 5.96 37.16 0.22 1.44 16 4 C 0.08 1.61 4.96 -3.82 -0.02 1.59 16 5 N -0.46 -9.61 4.31 -175.88 -0.76 -10.37 16 6 C 0.20 4.90 4.40 -4.98 -0.02 4.88 16 7 C -0.43 -10.31 6.14 -34.44 -0.21 -10.52 16 8 H 0.06 1.41 7.68 -52.48 -0.40 1.01 16 9 C 0.07 1.68 5.45 -17.82 -0.10 1.58 16 10 N -0.90 -23.25 13.30 55.43 0.74 -22.51 16 11 Si 0.87 19.61 29.54 -169.99 -5.02 14.59 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.39 8.07 6.58 -318.87 -2.10 5.98 16 16 N -0.34 -7.52 11.30 30.31 0.34 -7.17 16 17 N -0.29 -5.98 12.18 32.99 0.40 -5.58 16 18 C 0.17 2.90 8.07 -154.02 -1.24 1.66 16 19 C -0.06 -0.70 10.26 36.01 0.37 -0.33 16 20 N -0.48 -8.61 2.79 -115.37 -0.32 -8.93 16 21 C 0.22 3.47 6.57 -5.19 -0.03 3.43 16 22 C 0.12 2.10 7.41 -156.62 -1.16 0.94 16 23 N -0.28 -4.86 12.50 32.45 0.41 -4.46 16 24 N -0.08 -1.44 13.25 60.35 0.80 -0.64 16 25 N -0.13 -2.28 4.40 -16.70 -0.07 -2.36 16 26 C 0.09 1.24 11.63 59.85 0.70 1.94 16 27 N -0.21 -4.17 10.37 32.47 0.34 -3.83 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.12 7.66 -51.93 -0.40 0.72 16 34 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 35 H 0.02 0.62 5.09 -51.92 -0.26 0.36 16 36 H 0.02 0.61 7.22 -51.93 -0.37 0.23 16 37 H 0.25 6.22 8.31 -40.82 -0.34 5.88 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.76 7.39 -51.93 -0.38 0.38 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.13 2.17 8.10 -51.93 -0.42 1.75 16 42 H 0.12 1.34 7.43 -51.93 -0.39 0.96 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.13 2.05 8.14 -51.94 -0.42 1.63 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -31.92 378.30 -6.56 -38.48 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.39 Total: -0.27 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: -2.48 Total: 14.37 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: 1.87 Total: -65.85 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.23 Total: -7.02 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.92 -6.56 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698059253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.521 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds