Wall clock time and date at job start Sat Apr 11 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47437 * 2 1 4 4 C 1.53005 * 109.47005 * 120.00142 * 2 1 3 5 5 C 1.52997 * 109.47325 * 64.99776 * 4 2 1 6 6 H 1.09001 * 109.46979 * 305.00169 * 5 4 2 7 7 C 1.52999 * 109.47284 * 185.00611 * 5 4 2 8 8 N 1.46501 * 109.47252 * 185.00253 * 7 5 4 9 9 C 1.36941 * 119.99931 * 179.97438 * 8 7 5 10 10 H 1.07992 * 119.99932 * 359.97438 * 9 8 7 11 11 C 1.38806 * 119.99553 * 179.97438 * 9 8 7 12 12 N 1.31613 * 120.00490 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99736 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46976 * 89.99540 * 13 11 9 15 15 H 1.48501 * 109.47185 * 209.99751 * 13 11 9 16 16 H 1.48503 * 109.47056 * 329.99702 * 13 11 9 17 17 N 1.46499 * 109.47288 * 64.99970 * 5 4 2 18 18 C 1.34777 * 120.00199 * 275.00460 * 17 5 4 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 5 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 5 21 21 C 1.53002 * 112.84838 * 50.05354 * 20 18 17 22 22 F 1.39896 * 109.46992 * 69.66839 * 21 20 18 23 23 F 1.39903 * 109.46610 * 189.67031 * 21 20 18 24 24 F 1.39896 * 109.47302 * 309.66525 * 21 20 18 25 25 C 1.53782 * 113.60951 * 278.85820 * 20 18 17 26 26 C 1.54052 * 86.98701 * 270.83592 * 25 20 18 27 27 C 1.53778 * 113.61074 * 181.25274 * 20 18 17 28 28 H 1.08996 * 109.47093 * 300.00437 * 1 2 3 29 29 H 1.08999 * 109.46761 * 60.00267 * 1 2 3 30 30 H 1.08997 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47093 * 239.99563 * 2 1 3 32 32 H 1.08997 * 109.47495 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46927 * 299.99631 * 3 2 1 34 34 H 1.09005 * 109.47283 * 59.99922 * 3 2 1 35 35 H 1.09001 * 109.46737 * 304.99917 * 4 2 1 36 36 H 1.08994 * 109.47050 * 185.00080 * 4 2 1 37 37 H 1.09006 * 109.46830 * 304.99500 * 7 5 4 38 38 H 1.08994 * 109.47535 * 64.99592 * 7 5 4 39 39 H 0.97002 * 119.99978 * 359.97438 * 8 7 5 40 40 H 0.97001 * 120.00452 * 180.02562 * 12 11 9 41 41 H 0.97000 * 119.99484 * 94.99557 * 17 5 4 42 42 H 1.08995 * 113.62102 * 25.43246 * 25 20 18 43 43 H 1.09006 * 113.61046 * 156.33964 * 25 20 18 44 44 H 1.08996 * 113.62217 * 220.02260 * 26 25 20 45 45 H 1.09005 * 113.68448 * 89.12299 * 26 25 20 46 46 H 1.09009 * 113.60894 * 203.66333 * 27 20 18 47 47 H 1.08995 * 113.61585 * 334.56452 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0528 7 6 2.0351 -2.8888 2.4919 8 7 1.7567 -4.3233 2.3876 9 6 2.0356 -5.1533 3.4405 10 1 2.4612 -4.7504 4.3476 11 6 1.7713 -6.5124 3.3418 12 7 1.2522 -7.0033 2.2365 13 14 2.1524 -7.6447 4.7779 14 1 0.9668 -7.7314 5.6679 15 1 2.4872 -8.9979 4.2660 16 1 3.3061 -7.1048 5.5413 17 7 2.3146 -2.8421 0.0627 18 6 1.7814 -2.7779 -1.1735 19 8 0.7388 -2.1851 -1.3541 20 6 2.4772 -3.4484 -2.3299 21 6 2.8513 -4.9026 -2.0359 22 9 1.6894 -5.6789 -1.9705 23 9 3.6787 -5.3863 -3.0551 24 9 3.5281 -4.9720 -0.8135 25 6 3.6333 -2.6213 -2.9165 26 6 2.5907 -1.9757 -3.8490 27 6 1.7583 -3.2572 -3.6759 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2618 2.1370 36 1 3.1262 -0.6444 1.2952 37 1 3.0995 -2.7375 2.6722 38 1 1.4631 -2.4668 3.3182 39 1 1.3748 -4.6853 1.5727 40 1 1.0671 -7.9530 2.1676 41 1 3.1483 -3.3164 0.2073 42 1 4.0762 -1.9241 -2.2054 43 1 4.3767 -3.2211 -3.4418 44 1 2.9502 -1.8226 -4.8665 45 1 2.1177 -1.0880 -3.4290 46 1 1.9900 -4.0306 -4.4083 47 1 0.6886 -3.0731 -3.5772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698870549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:01 Heat of formation + Delta-G solvation = -165.199846 kcal Electronic energy + Delta-G solvation = -32649.825835 eV Core-core repulsion = 28032.466190 eV Total energy + Delta-G solvation = -4617.359645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.93638 -47.49150 -47.32099 -40.75978 -38.32930 -36.30464 -34.98401 -33.48865 -31.27174 -29.50510 -28.36537 -26.94170 -26.03931 -25.55925 -23.98608 -22.87765 -22.01534 -20.53466 -19.81540 -19.39412 -18.36798 -18.11830 -18.08075 -17.14358 -16.23146 -16.04117 -15.65358 -15.04420 -14.49050 -14.37064 -14.24427 -14.10882 -13.94375 -13.88887 -13.71110 -13.50284 -13.46836 -13.36821 -13.02347 -12.90156 -12.84837 -12.65257 -12.43469 -12.08581 -12.07816 -11.94009 -11.54166 -11.20351 -11.08217 -10.95768 -10.81116 -10.77106 -10.74290 -10.56040 -10.30049 -10.25083 -9.98975 -9.70493 -9.64030 -8.89560 -8.70118 -6.93314 -5.73990 -3.04447 2.36042 2.99616 3.13944 3.44497 3.49325 3.51289 3.71526 3.95370 3.99291 4.41440 4.49173 4.57957 4.67218 4.74549 4.92316 5.10445 5.12193 5.14623 5.36175 5.40791 5.51679 5.58798 5.60609 5.61479 5.66781 5.69970 5.81962 5.83686 5.91181 5.99325 6.06213 6.06849 6.08329 6.19927 6.24576 6.41338 6.44382 6.60919 6.63233 6.78940 6.88477 7.70546 7.73246 8.34592 8.42724 9.54634 10.10122 10.45269 11.47771 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.005338 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.077024 B = 5244.361330 C = 7278.760569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.134 3.866 6 H 0.093 0.907 7 C 0.144 3.856 8 N -0.730 5.730 9 C -0.244 4.244 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.927 5.927 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.700 5.700 18 C 0.541 3.459 19 O -0.514 6.514 20 C -0.168 4.168 21 C 0.468 3.532 22 F -0.168 7.168 23 F -0.182 7.182 24 F -0.167 7.167 25 C -0.117 4.117 26 C -0.131 4.131 27 C -0.107 4.107 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.023 0.977 38 H 0.034 0.966 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.408 0.592 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 13.426 -12.880 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.161 4.161 5 C 0.030 3.970 6 H 0.111 0.889 7 C 0.016 3.984 8 N -0.374 5.374 9 C -0.375 4.375 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.574 5.574 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.354 5.354 18 C 0.324 3.676 19 O -0.391 6.391 20 C -0.173 4.173 21 C 0.413 3.587 22 F -0.149 7.149 23 F -0.164 7.164 24 F -0.148 7.148 25 C -0.155 4.155 26 C -0.168 4.168 27 C -0.145 4.145 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.247 0.753 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.039 13.740 -12.798 19.207 hybrid contribution 0.608 -1.506 0.804 1.812 sum 4.648 12.235 -11.994 17.752 Atomic orbital electron populations 1.21834 0.94875 1.03093 0.99765 1.21148 0.96631 0.94852 0.98492 1.21866 1.00325 0.96935 1.01210 1.22029 1.00942 0.94664 0.98511 1.21461 0.98480 0.91131 0.85905 0.88930 1.20964 0.97884 0.86657 0.92918 1.42321 1.76604 1.00788 1.17737 1.19174 1.35213 0.88939 0.94213 0.91200 1.24740 1.01648 0.96915 0.97299 1.69669 1.49126 1.12755 1.25894 0.86222 0.77831 0.80495 0.81778 1.21748 1.21817 1.20802 1.46218 1.27685 1.54749 1.06737 1.18991 0.85000 0.80614 0.82953 1.90698 1.21820 1.42771 1.83791 1.23634 1.03344 0.91050 0.99224 1.19985 0.75167 0.89126 0.74406 1.93264 1.48316 1.77361 1.95943 1.93137 1.73199 1.89789 1.60234 1.93160 1.80678 1.96509 1.44461 1.23066 0.95047 0.98308 0.99035 1.22834 0.96180 0.97641 1.00148 1.22850 1.01840 0.98633 0.91131 0.94200 0.93798 0.90566 0.90842 0.93321 0.93232 0.93062 0.90935 0.91897 0.95886 0.94803 0.78008 0.93503 0.75337 0.89650 0.87750 0.90195 0.88974 0.88556 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.04 37.16 0.30 -1.56 16 2 C -0.09 -1.16 2.38 -90.62 -0.22 -1.38 16 3 C -0.15 -1.54 9.19 37.15 0.34 -1.20 16 4 C -0.12 -1.60 4.36 -26.73 -0.12 -1.72 16 5 C 0.13 2.18 2.33 -67.93 -0.16 2.03 16 6 H 0.09 1.68 5.92 -51.93 -0.31 1.37 16 7 C 0.14 2.79 5.82 -4.04 -0.02 2.76 16 8 N -0.73 -18.17 5.43 -59.91 -0.33 -18.49 16 9 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.27 5.50 -17.44 -0.10 -0.37 16 12 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 13 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 N -0.70 -11.12 4.17 -53.81 -0.22 -11.35 16 18 C 0.54 8.25 5.17 -10.98 -0.06 8.20 16 19 O -0.51 -8.45 10.79 5.55 0.06 -8.39 16 20 C -0.17 -2.18 0.86 -154.85 -0.13 -2.31 16 21 C 0.47 7.28 2.64 37.16 0.10 7.38 16 22 F -0.17 -3.10 17.18 2.25 0.04 -3.07 16 23 F -0.18 -2.53 15.74 2.25 0.04 -2.49 16 24 F -0.17 -2.96 14.54 2.25 0.03 -2.93 16 25 C -0.12 -1.13 7.12 -25.78 -0.18 -1.31 16 26 C -0.13 -1.17 7.76 -25.77 -0.20 -1.37 16 27 C -0.11 -1.17 6.83 -25.92 -0.18 -1.35 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.20 4.76 -51.93 -0.25 0.95 16 31 H 0.07 0.99 5.19 -51.93 -0.27 0.72 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 10.35 7.33 -40.82 -0.30 10.05 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.41 6.67 6.19 -40.82 -0.25 6.41 16 42 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 43 H 0.10 0.90 7.18 -51.93 -0.37 0.52 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.93 7.83 -51.92 -0.41 0.52 16 47 H 0.10 1.20 7.41 -51.93 -0.39 0.81 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -30.82 375.38 -6.95 -37.78 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -7.16 Total: 12.42 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.77 Total: 0.87 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.17 Total: -57.34 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.06 Total: -8.39 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 0.11 Total: -8.48 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.82 -6.95 -37.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698870549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.421 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds