Wall clock time and date at job start Sat Apr 11 2020 04:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47437 * 2 1 4 4 C 1.53005 * 109.47005 * 120.00142 * 2 1 3 5 5 C 1.52997 * 109.47325 * 64.99776 * 4 2 1 6 6 H 1.09001 * 109.46979 * 305.00169 * 5 4 2 7 7 C 1.52999 * 109.47284 * 185.00611 * 5 4 2 8 8 N 1.46501 * 109.47252 * 185.00253 * 7 5 4 9 9 C 1.36941 * 119.99931 * 179.97438 * 8 7 5 10 10 H 1.07992 * 119.99932 * 359.97438 * 9 8 7 11 11 C 1.38806 * 119.99553 * 179.97438 * 9 8 7 12 12 N 1.31613 * 120.00490 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99736 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46976 * 89.99540 * 13 11 9 15 15 H 1.48501 * 109.47185 * 209.99751 * 13 11 9 16 16 H 1.48503 * 109.47056 * 329.99702 * 13 11 9 17 17 N 1.46499 * 109.47288 * 64.99970 * 5 4 2 18 18 C 1.34777 * 120.00199 * 275.00460 * 17 5 4 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 5 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 5 21 21 C 1.53002 * 112.84838 * 50.05354 * 20 18 17 22 22 F 1.39896 * 109.46992 * 69.66839 * 21 20 18 23 23 F 1.39903 * 109.46610 * 189.67031 * 21 20 18 24 24 F 1.39896 * 109.47302 * 309.66525 * 21 20 18 25 25 C 1.53782 * 113.60951 * 278.85820 * 20 18 17 26 26 C 1.54052 * 86.98701 * 270.83592 * 25 20 18 27 27 C 1.53778 * 113.61074 * 181.25274 * 20 18 17 28 28 H 1.08996 * 109.47093 * 300.00437 * 1 2 3 29 29 H 1.08999 * 109.46761 * 60.00267 * 1 2 3 30 30 H 1.08997 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47093 * 239.99563 * 2 1 3 32 32 H 1.08997 * 109.47495 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46927 * 299.99631 * 3 2 1 34 34 H 1.09005 * 109.47283 * 59.99922 * 3 2 1 35 35 H 1.09001 * 109.46737 * 304.99917 * 4 2 1 36 36 H 1.08994 * 109.47050 * 185.00080 * 4 2 1 37 37 H 1.09006 * 109.46830 * 304.99500 * 7 5 4 38 38 H 1.08994 * 109.47535 * 64.99592 * 7 5 4 39 39 H 0.97002 * 119.99978 * 359.97438 * 8 7 5 40 40 H 0.97001 * 120.00452 * 180.02562 * 12 11 9 41 41 H 0.97000 * 119.99484 * 94.99557 * 17 5 4 42 42 H 1.08995 * 113.62102 * 25.43246 * 25 20 18 43 43 H 1.09006 * 113.61046 * 156.33964 * 25 20 18 44 44 H 1.08996 * 113.62217 * 220.02260 * 26 25 20 45 45 H 1.09005 * 113.68448 * 89.12299 * 26 25 20 46 46 H 1.09009 * 113.60894 * 203.66333 * 27 20 18 47 47 H 1.08995 * 113.61585 * 334.56452 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0528 7 6 2.0351 -2.8888 2.4919 8 7 1.7567 -4.3233 2.3876 9 6 2.0356 -5.1533 3.4405 10 1 2.4612 -4.7504 4.3476 11 6 1.7713 -6.5124 3.3418 12 7 1.2522 -7.0033 2.2365 13 14 2.1524 -7.6447 4.7779 14 1 0.9668 -7.7314 5.6679 15 1 2.4872 -8.9979 4.2660 16 1 3.3061 -7.1048 5.5413 17 7 2.3146 -2.8421 0.0627 18 6 1.7814 -2.7779 -1.1735 19 8 0.7388 -2.1851 -1.3541 20 6 2.4772 -3.4484 -2.3299 21 6 2.8513 -4.9026 -2.0359 22 9 1.6894 -5.6789 -1.9705 23 9 3.6787 -5.3863 -3.0551 24 9 3.5281 -4.9720 -0.8135 25 6 3.6333 -2.6213 -2.9165 26 6 2.5907 -1.9757 -3.8490 27 6 1.7583 -3.2572 -3.6759 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2618 2.1370 36 1 3.1262 -0.6444 1.2952 37 1 3.0995 -2.7375 2.6722 38 1 1.4631 -2.4668 3.3182 39 1 1.3748 -4.6853 1.5727 40 1 1.0671 -7.9530 2.1676 41 1 3.1483 -3.3164 0.2073 42 1 4.0762 -1.9241 -2.2054 43 1 4.3767 -3.2211 -3.4418 44 1 2.9502 -1.8226 -4.8665 45 1 2.1177 -1.0880 -3.4290 46 1 1.9900 -4.0306 -4.4083 47 1 0.6886 -3.0731 -3.5772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698870549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:00 Heat of formation + Delta-G solvation = -183.395215 kcal Electronic energy + Delta-G solvation = -32650.614845 eV Core-core repulsion = 28032.466190 eV Total energy + Delta-G solvation = -4618.148655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.21655 -48.74462 -48.67991 -41.87470 -39.40522 -37.53016 -36.42850 -35.07091 -33.06443 -30.94658 -29.49764 -27.92110 -27.18690 -26.85446 -25.24906 -24.54724 -23.18897 -21.86046 -20.91222 -20.47145 -19.58357 -19.41598 -19.28701 -19.11913 -17.36781 -17.26907 -16.89802 -16.54851 -15.95226 -15.58203 -15.46725 -15.38557 -15.27384 -15.14921 -15.06892 -14.95818 -14.83086 -14.66411 -14.49663 -14.25266 -13.96335 -13.78584 -13.42102 -13.27515 -13.16725 -13.00486 -12.94960 -12.79163 -12.53052 -12.34911 -12.10371 -11.99725 -11.88304 -11.72183 -11.61660 -11.58530 -11.37341 -11.22143 -10.98524 -10.80306 -9.96864 -9.00383 -7.92803 -5.22788 1.17808 1.46538 1.48136 1.56424 1.82556 1.96953 2.55647 2.63654 2.80133 2.94096 3.37468 3.41491 3.52619 3.58769 3.68131 3.74046 3.98805 4.09425 4.25485 4.27955 4.38892 4.41519 4.58361 4.66036 4.67187 4.82451 4.84750 4.86858 4.90747 4.92111 4.94878 5.01188 5.03761 5.12830 5.18931 5.23138 5.31887 5.41357 5.50702 5.56260 5.60127 5.68229 6.26366 6.47249 7.11773 7.33936 8.07995 8.31123 9.29667 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.005338 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.077024 B = 5244.361330 C = 7278.760569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.114 4.114 5 C 0.144 3.856 6 H 0.069 0.931 7 C 0.142 3.858 8 N -0.742 5.742 9 C -0.244 4.244 10 H 0.079 0.921 11 C -0.073 4.073 12 N -0.966 5.966 13 Si 0.971 3.029 14 H -0.289 1.289 15 H -0.299 1.299 16 H -0.267 1.267 17 N -0.704 5.704 18 C 0.538 3.462 19 O -0.529 6.529 20 C -0.173 4.173 21 C 0.462 3.538 22 F -0.192 7.192 23 F -0.171 7.171 24 F -0.183 7.183 25 C -0.107 4.107 26 C -0.116 4.116 27 C -0.108 4.108 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.372 0.628 40 H 0.248 0.752 41 H 0.405 0.595 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 15.344 -13.191 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.152 4.152 5 C 0.039 3.961 6 H 0.087 0.913 7 C 0.016 3.984 8 N -0.384 5.384 9 C -0.375 4.375 10 H 0.097 0.903 11 C -0.265 4.265 12 N -0.616 5.616 13 Si 0.801 3.199 14 H -0.216 1.216 15 H -0.226 1.226 16 H -0.192 1.192 17 N -0.357 5.357 18 C 0.322 3.678 19 O -0.406 6.406 20 C -0.177 4.177 21 C 0.407 3.593 22 F -0.173 7.173 23 F -0.152 7.152 24 F -0.165 7.165 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.146 4.146 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.244 0.756 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.128 0.872 45 H 0.103 0.897 46 H 0.129 0.871 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.636 15.711 -13.092 21.214 hybrid contribution 0.091 -2.075 0.902 2.264 sum 5.727 13.637 -12.191 19.167 Atomic orbital electron populations 1.21769 0.95782 1.01326 1.00274 1.21090 0.95782 0.96256 0.97623 1.21799 1.00959 0.95099 1.01860 1.21972 1.01826 0.92079 0.99356 1.21284 0.97158 0.92949 0.84666 0.91313 1.21146 0.98445 0.83954 0.94895 1.42501 1.76467 1.02895 1.16586 1.19611 1.33532 0.89480 0.94910 0.90304 1.25543 1.02578 0.98609 0.99798 1.69846 1.51239 1.12447 1.28066 0.85177 0.77929 0.78033 0.78810 1.21631 1.22585 1.19158 1.46226 1.27549 1.54928 1.06978 1.19332 0.84824 0.80384 0.83239 1.90698 1.22326 1.43543 1.84063 1.23796 1.05671 0.89210 0.99059 1.20443 0.74489 0.90285 0.74041 1.93212 1.49754 1.78286 1.96054 1.93148 1.72727 1.89842 1.59473 1.93122 1.80960 1.96657 1.45747 1.23176 0.94451 0.97784 0.98989 1.22772 0.94912 0.96031 1.01566 1.22965 1.01068 1.00440 0.90124 0.93369 0.93557 0.93426 0.91784 0.92256 0.92615 0.92428 0.89978 0.90511 0.94621 0.94320 0.79563 0.94297 0.75605 0.88832 0.86107 0.87225 0.89712 0.87069 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 8.04 71.98 0.58 -2.94 16 2 C -0.09 -2.09 2.38 -10.79 -0.03 -2.12 16 3 C -0.14 -2.55 9.19 71.98 0.66 -1.88 16 4 C -0.11 -2.79 4.36 30.59 0.13 -2.66 16 5 C 0.14 4.67 2.33 44.99 0.10 4.78 16 6 H 0.07 2.58 5.92 -2.39 -0.01 2.57 16 7 C 0.14 5.46 5.82 86.38 0.50 5.97 16 8 N -0.74 -37.45 5.43 -343.46 -1.87 -39.32 16 9 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 10 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 11 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 12 N -0.97 -60.43 13.06 21.65 0.28 -60.14 16 13 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 N -0.70 -22.48 4.17 -442.54 -1.85 -24.33 16 18 C 0.54 16.52 5.17 87.66 0.45 16.97 16 19 O -0.53 -17.71 10.79 -3.04 -0.03 -17.74 16 20 C -0.17 -4.39 0.86 -52.40 -0.04 -4.44 16 21 C 0.46 14.49 2.64 71.98 0.19 14.68 16 22 F -0.19 -7.38 17.18 44.97 0.77 -6.61 16 23 F -0.17 -4.59 15.74 44.97 0.71 -3.89 16 24 F -0.18 -6.65 14.54 44.97 0.65 -6.00 16 25 C -0.11 -1.82 7.12 31.21 0.22 -1.59 16 26 C -0.12 -1.77 7.76 31.21 0.24 -1.53 16 27 C -0.11 -2.26 6.83 31.12 0.21 -2.04 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.53 4.76 -2.39 -0.01 1.52 16 31 H 0.06 1.65 5.19 -2.39 -0.01 1.63 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.37 20.66 7.33 -92.71 -0.68 19.98 16 40 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.41 13.35 6.19 -92.71 -0.57 12.77 16 42 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 43 H 0.12 1.70 7.18 -2.38 -0.02 1.68 16 44 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.11 1.97 7.83 -2.38 -0.02 1.95 16 47 H 0.08 1.99 7.41 -2.39 -0.02 1.98 16 Total: -1.00 -67.75 375.38 4.98 -62.77 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.25 Total: 39.79 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 4.54 Total: 6.73 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -3.43 Total: -123.79 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.03 Total: -17.74 kcal Atomic # 9 Polarization: -18.63 SS G_CDS: 2.13 Total: -16.49 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -67.75 4.98 -62.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698870549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.625 kcal (2) G-P(sol) polarization free energy of solvation -67.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds