Wall clock time and date at job start Sat Apr 11 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99900 * 2 1 4 4 C 1.38761 * 120.05526 * 359.72487 * 3 2 1 5 5 C 1.38122 * 119.94063 * 179.69885 * 4 3 2 6 6 C 1.38286 * 120.05628 * 0.60454 * 5 4 3 7 7 C 1.38241 * 120.11458 * 359.66910 * 6 5 4 8 8 C 1.50699 * 119.97658 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47056 * 5.60167 * 8 7 6 10 10 C 1.52999 * 109.47282 * 125.60173 * 8 7 6 11 11 C 1.50702 * 109.47106 * 245.60307 * 8 7 6 12 12 O 1.21280 * 120.00212 * 5.51886 * 11 8 7 13 13 N 1.34778 * 119.99916 * 185.51869 * 11 8 7 14 14 C 1.46503 * 119.99991 * 180.02562 * 13 11 8 15 15 C 1.53000 * 109.47133 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46272 * 294.99269 * 15 14 13 17 17 C 1.52997 * 109.46956 * 174.99954 * 15 14 13 18 18 O 1.42902 * 109.47094 * 304.99538 * 17 15 14 19 19 N 1.46494 * 109.47478 * 54.99303 * 15 14 13 20 20 C 1.36935 * 120.00458 * 205.00197 * 19 15 14 21 21 H 1.08004 * 119.99544 * 359.97438 * 20 19 15 22 22 C 1.38812 * 120.00380 * 180.02562 * 20 19 15 23 23 N 1.31616 * 119.99676 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47119 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47140 * 120.00062 * 24 22 20 27 27 H 1.48507 * 109.46974 * 239.99708 * 24 22 20 28 28 C 1.38169 * 120.05315 * 0.03134 * 7 6 5 29 29 H 1.09000 * 109.47157 * 59.99823 * 1 2 3 30 30 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47109 * 299.99753 * 1 2 3 32 32 H 1.07999 * 120.02978 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97269 * 180.29727 * 5 4 3 34 34 H 1.08001 * 119.94189 * 179.70225 * 6 5 4 35 35 H 1.09002 * 109.47111 * 59.99693 * 9 8 7 36 36 H 1.09002 * 109.47322 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47179 * 300.00046 * 9 8 7 38 38 H 1.09003 * 109.46695 * 60.00004 * 10 8 7 39 39 H 1.08993 * 109.46956 * 179.97438 * 10 8 7 40 40 H 1.09001 * 109.47232 * 300.00550 * 10 8 7 41 41 H 0.96999 * 119.99750 * 0.02562 * 13 11 8 42 42 H 1.09006 * 109.46451 * 299.99715 * 14 13 11 43 43 H 1.08995 * 109.46987 * 59.99297 * 14 13 11 44 44 H 1.09000 * 109.47158 * 64.99683 * 17 15 14 45 45 H 1.09002 * 109.46887 * 184.99303 * 17 15 14 46 46 H 0.96705 * 114.00062 * 180.02562 * 18 17 15 47 47 H 0.97003 * 119.99452 * 25.00528 * 19 15 14 48 48 H 0.97004 * 119.99980 * 180.02562 * 23 22 20 49 49 H 1.07999 * 120.03141 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 0.0005 6 6 3.3019 3.6758 0.0000 7 6 4.0560 2.5172 0.0000 8 6 5.5608 2.5982 -0.0001 9 6 5.9928 4.0592 0.1407 10 6 6.1153 1.7872 1.1728 11 6 6.0939 2.0392 -1.2940 12 8 5.3270 1.7093 -2.1738 13 7 7.4230 1.9058 -1.4736 14 6 7.9413 1.3628 -2.7317 15 6 9.4696 1.3170 -2.6762 16 1 9.8615 2.3324 -2.6172 17 6 10.0055 0.6359 -3.9371 18 8 9.4016 -0.6517 -4.0763 19 7 9.8930 0.5607 -1.4951 20 6 11.1226 0.7918 -0.9386 21 1 11.7805 1.5314 -1.3706 22 6 11.5239 0.0748 0.1803 23 7 10.7223 -0.8268 0.7064 24 14 13.2010 0.3907 0.9398 25 1 13.9039 1.4456 0.1664 26 1 13.0314 0.8370 2.3459 27 1 14.0011 -0.8601 0.9106 28 6 3.4311 1.2849 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2128 2.3204 -0.0107 33 1 1.3340 4.5114 0.0009 34 1 3.7921 4.6381 0.0000 35 1 5.6072 4.4636 1.0765 36 1 7.0813 4.1179 0.1402 37 1 5.5978 4.6370 -0.6949 38 1 5.8074 0.7464 1.0725 39 1 7.2037 1.8455 1.1724 40 1 5.7296 2.1915 2.1087 41 1 8.0363 2.1692 -0.7698 42 1 7.5531 0.3550 -2.8797 43 1 7.6262 1.9987 -3.5590 44 1 9.7667 1.2454 -4.8086 45 1 11.0868 0.5235 -3.8576 46 1 9.6959 -1.1420 -4.8561 47 1 9.3022 -0.1038 -1.1074 48 1 11.0026 -1.3276 1.4885 49 1 4.0206 0.3800 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700820139.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:17 Heat of formation + Delta-G solvation = -88.893730 kcal Electronic energy + Delta-G solvation = -29856.189458 eV Core-core repulsion = 25783.995435 eV Total energy + Delta-G solvation = -4072.194023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61758 -39.48573 -37.70930 -36.95591 -34.85009 -34.83167 -33.38875 -31.33337 -30.84862 -29.40698 -28.22685 -27.73461 -26.92850 -25.39432 -23.75471 -23.44139 -22.37185 -21.29383 -20.06335 -19.19081 -17.94226 -17.44162 -16.62588 -16.52579 -16.11919 -15.94749 -15.78462 -15.74429 -15.00826 -14.68229 -14.24184 -14.07251 -13.94466 -13.56169 -13.45117 -13.36774 -13.11811 -12.85738 -12.66691 -12.45617 -12.34150 -12.12983 -12.02050 -11.87906 -11.69939 -11.45037 -11.38584 -11.10481 -10.91795 -10.87385 -10.85549 -10.64288 -10.51092 -10.07492 -9.79232 -9.40377 -9.27791 -8.98670 -8.74986 -8.49644 -8.16067 -7.03508 -5.81623 -3.11881 1.34221 1.50813 3.04750 3.21913 3.38193 3.44082 3.46699 3.55123 3.94540 4.52221 4.53015 4.73371 4.89444 4.94129 4.98773 4.99040 5.00033 5.06293 5.19303 5.29808 5.32335 5.42722 5.53197 5.54340 5.56551 5.60434 5.67926 5.77980 5.89466 5.90902 5.94499 6.04710 6.06970 6.07795 6.11481 6.31125 6.36211 6.41001 6.44664 6.52725 6.66286 6.76431 6.78674 6.98834 7.40258 7.62673 8.03199 8.21962 8.35193 8.68078 9.47665 10.03155 10.40015 11.39773 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.002896 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.817367 B = 9665.947821 C =10149.773697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.152 4.152 7 C -0.012 4.012 8 C -0.043 4.043 9 C -0.141 4.141 10 C -0.141 4.141 11 C 0.521 3.479 12 O -0.544 6.544 13 N -0.710 5.710 14 C 0.119 3.881 15 C 0.166 3.834 16 H 0.065 0.935 17 C 0.059 3.941 18 O -0.560 6.560 19 N -0.713 5.713 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.007 4.007 23 N -0.924 5.924 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 C -0.121 4.121 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.408 0.592 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.026 0.974 45 H 0.048 0.952 46 H 0.363 0.637 47 H 0.389 0.611 48 H 0.255 0.745 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 8.927 -1.779 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.080 3.920 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.170 4.170 7 C -0.013 4.013 8 C -0.046 4.046 9 C -0.199 4.199 10 C -0.199 4.199 11 C 0.306 3.694 12 O -0.421 6.421 13 N -0.362 5.362 14 C -0.005 4.005 15 C 0.055 3.945 16 H 0.083 0.917 17 C -0.022 4.022 18 O -0.363 6.363 19 N -0.354 5.354 20 C -0.378 4.378 21 H 0.088 0.912 22 C -0.204 4.204 23 N -0.571 5.571 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.245 0.755 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.208 0.792 47 H 0.224 0.776 48 H 0.065 0.935 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.970 8.737 -1.789 19.170 hybrid contribution 1.200 -0.130 0.236 1.230 sum -15.769 8.607 -1.553 18.032 Atomic orbital electron populations 1.23013 0.78777 1.03727 1.01096 1.86095 1.21047 1.27076 1.88854 1.18936 0.92175 0.84053 0.96867 1.21154 0.99639 0.92515 1.09835 1.20820 0.94437 0.96755 0.98300 1.21024 0.93624 0.98145 1.04251 1.19098 0.93268 0.92445 0.96452 1.19740 0.91972 0.97958 0.94975 1.21936 1.02238 0.93085 1.02624 1.21928 1.02138 0.99935 0.95861 1.20202 0.82560 0.78387 0.88285 1.90687 1.57076 1.50216 1.44124 1.45959 1.06576 1.64254 1.19364 1.21529 0.94633 0.99346 0.85023 1.20586 0.90999 0.95116 0.87842 0.91739 1.23033 0.97230 0.84141 0.97807 1.86577 1.69444 1.30765 1.49503 1.42377 1.18378 1.45463 1.29230 1.19248 0.93286 1.17455 1.07823 0.91206 1.24736 0.98190 0.98753 0.98755 1.69687 1.36064 1.26936 1.24417 0.86175 0.84011 0.77274 0.78989 1.20647 1.21847 1.21943 1.20199 0.91177 0.98427 1.04121 0.92810 0.88415 0.92863 0.85878 0.86018 0.85488 0.91061 0.91244 0.91803 0.91602 0.90553 0.91475 0.75480 0.90676 0.92293 0.95589 0.93359 0.79192 0.77641 0.93496 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.30 10.50 -19.42 -0.20 -4.50 16 3 C 0.12 1.77 6.69 -39.21 -0.26 1.51 16 4 C -0.21 -2.52 9.04 -39.43 -0.36 -2.88 16 5 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 6 C -0.15 -1.88 8.99 -39.56 -0.36 -2.24 16 7 C -0.01 -0.17 4.24 -104.65 -0.44 -0.62 16 8 C -0.04 -0.61 0.72 -156.81 -0.11 -0.72 16 9 C -0.14 -1.59 7.11 37.16 0.26 -1.33 16 10 C -0.14 -1.95 8.07 37.16 0.30 -1.65 16 11 C 0.52 9.01 6.35 -10.98 -0.07 8.94 16 12 O -0.54 -11.20 15.53 5.56 0.09 -11.11 16 13 N -0.71 -12.18 5.22 -60.29 -0.31 -12.50 16 14 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 15 C 0.17 3.13 2.84 -67.94 -0.19 2.94 16 16 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 17 C 0.06 1.03 6.86 37.16 0.25 1.29 16 18 O -0.56 -10.11 12.64 -35.23 -0.45 -10.55 16 19 N -0.71 -16.74 4.51 -53.43 -0.24 -16.98 16 20 C -0.25 -6.39 9.93 -15.06 -0.15 -6.54 16 21 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -26.77 13.06 55.49 0.72 -26.05 16 24 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C -0.12 -1.88 8.30 -39.43 -0.33 -2.21 16 29 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 32 H 0.12 1.13 6.30 -52.49 -0.33 0.80 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.30 5.90 -52.49 -0.31 0.99 16 35 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 36 H 0.07 0.76 7.97 -51.93 -0.41 0.35 16 37 H 0.06 0.70 7.25 -51.93 -0.38 0.32 16 38 H 0.06 0.98 7.09 -51.93 -0.37 0.61 16 39 H 0.08 1.11 7.27 -51.93 -0.38 0.74 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.41 6.96 7.05 -40.82 -0.29 6.67 16 42 H 0.07 1.55 7.39 -51.93 -0.38 1.16 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.36 4.75 9.12 45.56 0.42 5.17 16 47 H 0.39 10.19 7.80 -40.82 -0.32 9.87 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.13 2.13 7.25 -52.49 -0.38 1.75 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -33.30 398.40 -7.22 -40.52 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -6.83 Total: 20.53 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.97 Total: -1.78 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.17 Total: -55.53 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.56 Total: -26.17 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.30 -7.22 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700820139.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.375 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds