Wall clock time and date at job start Sat Apr 11 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99900 * 2 1 4 4 C 1.38761 * 120.05526 * 359.72487 * 3 2 1 5 5 C 1.38122 * 119.94063 * 179.69885 * 4 3 2 6 6 C 1.38286 * 120.05628 * 0.60454 * 5 4 3 7 7 C 1.38241 * 120.11458 * 359.66910 * 6 5 4 8 8 C 1.50699 * 119.97658 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47056 * 5.60167 * 8 7 6 10 10 C 1.52999 * 109.47282 * 125.60173 * 8 7 6 11 11 C 1.50702 * 109.47106 * 245.60307 * 8 7 6 12 12 O 1.21280 * 120.00212 * 5.51886 * 11 8 7 13 13 N 1.34778 * 119.99916 * 185.51869 * 11 8 7 14 14 C 1.46503 * 119.99991 * 180.02562 * 13 11 8 15 15 C 1.53000 * 109.47133 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46272 * 294.99269 * 15 14 13 17 17 C 1.52997 * 109.46956 * 174.99954 * 15 14 13 18 18 O 1.42902 * 109.47094 * 304.99538 * 17 15 14 19 19 N 1.46494 * 109.47478 * 54.99303 * 15 14 13 20 20 C 1.36935 * 120.00458 * 205.00197 * 19 15 14 21 21 H 1.08004 * 119.99544 * 359.97438 * 20 19 15 22 22 C 1.38812 * 120.00380 * 180.02562 * 20 19 15 23 23 N 1.31616 * 119.99676 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47119 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47140 * 120.00062 * 24 22 20 27 27 H 1.48507 * 109.46974 * 239.99708 * 24 22 20 28 28 C 1.38169 * 120.05315 * 0.03134 * 7 6 5 29 29 H 1.09000 * 109.47157 * 59.99823 * 1 2 3 30 30 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47109 * 299.99753 * 1 2 3 32 32 H 1.07999 * 120.02978 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97269 * 180.29727 * 5 4 3 34 34 H 1.08001 * 119.94189 * 179.70225 * 6 5 4 35 35 H 1.09002 * 109.47111 * 59.99693 * 9 8 7 36 36 H 1.09002 * 109.47322 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47179 * 300.00046 * 9 8 7 38 38 H 1.09003 * 109.46695 * 60.00004 * 10 8 7 39 39 H 1.08993 * 109.46956 * 179.97438 * 10 8 7 40 40 H 1.09001 * 109.47232 * 300.00550 * 10 8 7 41 41 H 0.96999 * 119.99750 * 0.02562 * 13 11 8 42 42 H 1.09006 * 109.46451 * 299.99715 * 14 13 11 43 43 H 1.08995 * 109.46987 * 59.99297 * 14 13 11 44 44 H 1.09000 * 109.47158 * 64.99683 * 17 15 14 45 45 H 1.09002 * 109.46887 * 184.99303 * 17 15 14 46 46 H 0.96705 * 114.00062 * 180.02562 * 18 17 15 47 47 H 0.97003 * 119.99452 * 25.00528 * 19 15 14 48 48 H 0.97004 * 119.99980 * 180.02562 * 23 22 20 49 49 H 1.07999 * 120.03141 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 0.0005 6 6 3.3019 3.6758 0.0000 7 6 4.0560 2.5172 0.0000 8 6 5.5608 2.5982 -0.0001 9 6 5.9928 4.0592 0.1407 10 6 6.1153 1.7872 1.1728 11 6 6.0939 2.0392 -1.2940 12 8 5.3270 1.7093 -2.1738 13 7 7.4230 1.9058 -1.4736 14 6 7.9413 1.3628 -2.7317 15 6 9.4696 1.3170 -2.6762 16 1 9.8615 2.3324 -2.6172 17 6 10.0055 0.6359 -3.9371 18 8 9.4016 -0.6517 -4.0763 19 7 9.8930 0.5607 -1.4951 20 6 11.1226 0.7918 -0.9386 21 1 11.7805 1.5314 -1.3706 22 6 11.5239 0.0748 0.1803 23 7 10.7223 -0.8268 0.7064 24 14 13.2010 0.3907 0.9398 25 1 13.9039 1.4456 0.1664 26 1 13.0314 0.8370 2.3459 27 1 14.0011 -0.8601 0.9106 28 6 3.4311 1.2849 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2128 2.3204 -0.0107 33 1 1.3340 4.5114 0.0009 34 1 3.7921 4.6381 0.0000 35 1 5.6072 4.4636 1.0765 36 1 7.0813 4.1179 0.1402 37 1 5.5978 4.6370 -0.6949 38 1 5.8074 0.7464 1.0725 39 1 7.2037 1.8455 1.1724 40 1 5.7296 2.1915 2.1087 41 1 8.0363 2.1692 -0.7698 42 1 7.5531 0.3550 -2.8797 43 1 7.6262 1.9987 -3.5590 44 1 9.7667 1.2454 -4.8086 45 1 11.0868 0.5235 -3.8576 46 1 9.6959 -1.1420 -4.8561 47 1 9.3022 -0.1038 -1.1074 48 1 11.0026 -1.3276 1.4885 49 1 4.0206 0.3800 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700820139.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:16 Heat of formation + Delta-G solvation = -114.098127 kcal Electronic energy + Delta-G solvation = -29857.282403 eV Core-core repulsion = 25783.995435 eV Total energy + Delta-G solvation = -4073.286968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74335 -40.62178 -38.93353 -38.30021 -36.38255 -35.96507 -35.09378 -33.06576 -31.82118 -30.53506 -29.86396 -28.58763 -27.82174 -26.79960 -25.62931 -24.62878 -23.37306 -22.42075 -21.61858 -20.40369 -19.44635 -18.82355 -18.16039 -17.72380 -17.28179 -17.09948 -16.87329 -16.63583 -16.54592 -16.12986 -15.75032 -15.32395 -15.24145 -14.88414 -14.80326 -14.56363 -14.45635 -14.36836 -13.73828 -13.62128 -13.38044 -13.26642 -13.13280 -13.10050 -13.01074 -12.74495 -12.64952 -12.61948 -12.35713 -12.19193 -11.95815 -11.93255 -11.84471 -11.71701 -11.59283 -11.01710 -10.73551 -10.65471 -9.97406 -9.76717 -9.12977 -8.98863 -7.87743 -5.17187 0.35074 0.52822 1.50594 1.51965 1.60781 1.67233 2.27487 2.39041 2.59172 2.87856 3.44405 3.48537 3.61504 3.77096 3.88186 3.91292 4.00187 4.02524 4.05558 4.17985 4.30697 4.38363 4.40235 4.44835 4.56023 4.56427 4.60815 4.63165 4.70124 4.71830 4.81394 4.84512 4.88905 4.92865 5.00080 5.06866 5.20365 5.22295 5.24167 5.36482 5.51217 5.53279 5.58294 5.66638 5.85845 6.30352 6.49229 6.62685 7.06000 7.28577 7.38727 8.10498 8.36556 9.34932 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.002896 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.817367 B = 9665.947821 C =10149.773697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.346 6.346 3 C 0.108 3.892 4 C -0.210 4.210 5 C -0.079 4.079 6 C -0.156 4.156 7 C -0.027 4.027 8 C -0.037 4.037 9 C -0.138 4.138 10 C -0.136 4.136 11 C 0.518 3.482 12 O -0.580 6.580 13 N -0.707 5.707 14 C 0.130 3.870 15 C 0.162 3.838 16 H 0.082 0.918 17 C 0.064 3.936 18 O -0.585 6.585 19 N -0.722 5.722 20 C -0.234 4.234 21 H 0.082 0.918 22 C -0.070 4.070 23 N -0.964 5.964 24 Si 0.967 3.033 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.303 1.303 28 C -0.154 4.154 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.410 0.590 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.385 0.615 47 H 0.372 0.628 48 H 0.247 0.753 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.252 11.962 -2.165 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.063 3.937 4 C -0.229 4.229 5 C -0.097 4.097 6 C -0.174 4.174 7 C -0.027 4.027 8 C -0.040 4.040 9 C -0.195 4.195 10 C -0.193 4.193 11 C 0.304 3.696 12 O -0.460 6.460 13 N -0.358 5.358 14 C 0.005 3.995 15 C 0.053 3.947 16 H 0.099 0.901 17 C -0.017 4.017 18 O -0.391 6.391 19 N -0.362 5.362 20 C -0.366 4.366 21 H 0.100 0.900 22 C -0.263 4.263 23 N -0.615 5.615 24 Si 0.797 3.203 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.231 1.231 28 C -0.173 4.173 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.247 0.753 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.233 0.767 47 H 0.204 0.796 48 H 0.056 0.944 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.811 11.811 -2.227 21.486 hybrid contribution 1.348 -1.103 0.245 1.759 sum -16.463 10.707 -1.982 19.738 Atomic orbital electron populations 1.23332 0.76340 1.05400 1.02386 1.86056 1.23710 1.27390 1.88935 1.19131 0.91970 0.85237 0.97330 1.21514 1.01047 0.91809 1.08515 1.21305 0.94311 0.97883 0.96192 1.21359 0.94334 0.98219 1.03464 1.19207 0.93325 0.92823 0.97394 1.19731 0.92135 0.99580 0.92558 1.21969 1.02517 0.90757 1.04252 1.21870 1.01369 0.98906 0.97153 1.20856 0.82087 0.77511 0.89109 1.90658 1.57800 1.51806 1.45771 1.45953 1.06797 1.63942 1.19133 1.21351 0.94001 0.98087 0.86032 1.20838 0.91407 0.95408 0.87048 0.90072 1.22898 0.96263 0.84406 0.98162 1.86535 1.69886 1.31480 1.51236 1.42484 1.17539 1.45470 1.30672 1.19632 0.93761 1.16248 1.06932 0.90031 1.25464 1.01448 0.99406 0.99969 1.69855 1.37890 1.28695 1.25051 0.85168 0.80245 0.76846 0.78002 1.18804 1.22253 1.23147 1.20191 0.92200 0.98054 1.06868 0.91742 0.86771 0.91156 0.82979 0.82229 0.82996 0.88558 0.91043 0.91059 0.93946 0.91596 0.89265 0.75322 0.93721 0.90646 0.91725 0.94385 0.76736 0.79647 0.94368 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.35 -9.64 10.50 -92.41 -0.97 -10.61 16 3 C 0.11 3.12 6.69 22.51 0.15 3.27 16 4 C -0.21 -4.55 9.04 22.37 0.20 -4.35 16 5 C -0.08 -1.53 10.04 22.25 0.22 -1.31 16 6 C -0.16 -3.50 8.99 22.28 0.20 -3.30 16 7 C -0.03 -0.78 4.24 -19.88 -0.08 -0.86 16 8 C -0.04 -1.04 0.72 -53.68 -0.04 -1.08 16 9 C -0.14 -2.82 7.11 71.98 0.51 -2.31 16 10 C -0.14 -3.91 8.07 71.98 0.58 -3.33 16 11 C 0.52 18.42 6.35 87.66 0.56 18.98 16 12 O -0.58 -24.80 15.53 -3.03 -0.05 -24.85 16 13 N -0.71 -24.75 5.22 -463.05 -2.42 -27.17 16 14 C 0.13 4.72 5.12 86.38 0.44 5.17 16 15 C 0.16 6.01 2.84 44.99 0.13 6.14 16 16 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 17 C 0.06 2.11 6.86 71.98 0.49 2.60 16 18 O -0.58 -20.86 12.64 -148.98 -1.88 -22.74 16 19 N -0.72 -34.20 4.51 -322.95 -1.46 -35.65 16 20 C -0.23 -12.02 9.93 84.03 0.83 -11.19 16 21 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 23 N -0.96 -57.56 13.06 21.65 0.28 -57.28 16 24 Si 0.97 44.40 29.55 68.60 2.03 46.43 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 28 C -0.15 -5.09 8.30 22.37 0.19 -4.91 16 29 H 0.06 0.88 7.65 -2.39 -0.02 0.86 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 0.87 7.67 -2.39 -0.02 0.85 16 32 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 33 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.15 2.56 5.90 -2.91 -0.02 2.54 16 35 H 0.10 1.51 7.77 -2.39 -0.02 1.49 16 36 H 0.07 1.44 7.97 -2.39 -0.02 1.42 16 37 H 0.07 1.37 7.25 -2.39 -0.02 1.35 16 38 H 0.04 1.39 7.09 -2.39 -0.02 1.37 16 39 H 0.07 2.00 7.27 -2.39 -0.02 1.99 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.41 14.18 7.05 -92.71 -0.65 13.52 16 42 H 0.04 1.91 7.39 -2.38 -0.02 1.89 16 43 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.38 9.70 9.12 -74.05 -0.68 9.03 16 47 H 0.37 20.15 7.80 -92.71 -0.72 19.43 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H 0.10 3.64 7.25 -2.91 -0.02 3.62 16 Total: -1.00 -75.03 398.40 0.44 -74.59 By element: Atomic # 1 Polarization: 56.76 SS G_CDS: -1.06 Total: 55.70 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.97 Total: 1.58 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -3.59 Total: -120.10 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -2.90 Total: -58.20 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -75.03 0.44 -74.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700820139.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.503 kcal (2) G-P(sol) polarization free energy of solvation -75.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds