Wall clock time and date at job start Sat Apr 11 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00147 * 2 1 4 4 C 1.38752 * 120.05456 * 0.02957 * 3 2 1 5 5 C 1.38117 * 119.94730 * 179.97438 * 4 3 2 6 6 C 1.38298 * 120.05480 * 359.74412 * 5 4 3 7 7 C 1.38237 * 120.10671 * 0.51122 * 6 5 4 8 8 C 1.50706 * 119.97126 * 179.76753 * 7 6 5 9 9 C 1.53003 * 109.47126 * 174.11187 * 8 7 6 10 10 C 1.52995 * 109.47229 * 54.10911 * 8 7 6 11 11 C 1.50701 * 109.46661 * 294.11052 * 8 7 6 12 12 O 1.21280 * 120.00225 * 354.51208 * 11 8 7 13 13 N 1.34776 * 119.99497 * 174.51132 * 11 8 7 14 14 C 1.46505 * 119.99993 * 180.02562 * 13 11 8 15 15 C 1.52990 * 109.47360 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47437 * 64.99621 * 15 14 13 17 17 C 1.53000 * 109.47150 * 185.00142 * 15 14 13 18 18 O 1.42895 * 109.47459 * 54.99514 * 17 15 14 19 19 N 1.46498 * 109.46888 * 304.99592 * 15 14 13 20 20 C 1.36938 * 120.00178 * 155.00236 * 19 15 14 21 21 H 1.08000 * 119.99880 * 359.97438 * 20 19 15 22 22 C 1.38815 * 120.00023 * 180.02562 * 20 19 15 23 23 N 1.31615 * 120.00025 * 359.72158 * 22 20 19 24 24 Si 1.86802 * 119.99780 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47064 * 179.72064 * 24 22 20 26 26 H 1.48502 * 109.46997 * 299.72240 * 24 22 20 27 27 H 1.48501 * 109.47555 * 59.72027 * 24 22 20 28 28 C 1.38173 * 120.06192 * 359.48780 * 7 6 5 29 29 H 1.08999 * 109.46583 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46918 * 299.99252 * 1 2 3 31 31 H 1.09002 * 109.47210 * 59.99254 * 1 2 3 32 32 H 1.08004 * 120.02572 * 359.95253 * 4 3 2 33 33 H 1.07999 * 119.97772 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.94673 * 180.27594 * 6 5 4 35 35 H 1.09000 * 109.47034 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47001 * 299.99532 * 9 8 7 37 37 H 1.08995 * 109.47112 * 60.00157 * 9 8 7 38 38 H 1.08995 * 109.47272 * 300.00441 * 10 8 7 39 39 H 1.09002 * 109.47286 * 60.00230 * 10 8 7 40 40 H 1.09000 * 109.47330 * 180.02562 * 10 8 7 41 41 H 0.97004 * 120.00490 * 0.02562 * 13 11 8 42 42 H 1.08996 * 109.47144 * 59.99108 * 14 13 11 43 43 H 1.09007 * 109.46750 * 300.00080 * 14 13 11 44 44 H 1.09010 * 109.47246 * 174.99983 * 17 15 14 45 45 H 1.09002 * 109.47127 * 294.99068 * 17 15 14 46 46 H 0.96703 * 114.00362 * 180.02562 * 18 17 15 47 47 H 0.97000 * 120.00492 * 335.00182 * 19 15 14 48 48 H 0.96994 * 120.00320 * 0.27712 * 23 22 20 49 49 H 1.07990 * 120.02919 * 180.23601 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9208 3.6047 0.0012 6 6 3.3020 3.6758 0.0064 7 6 4.0559 2.5172 0.0005 8 6 5.5608 2.5982 0.0009 9 6 6.1473 1.1921 0.1417 10 6 6.0246 3.4640 1.1740 11 6 6.0312 3.2115 -1.2928 12 8 5.2334 3.4577 -2.1725 13 7 7.3383 3.4863 -1.4722 14 6 7.7956 4.0830 -2.7296 15 6 9.3103 4.2906 -2.6745 16 1 9.8080 3.3226 -2.6169 17 6 9.7704 5.0265 -3.9345 18 8 9.0332 6.2429 -4.0718 19 7 9.6515 5.0861 -1.4925 20 6 10.8989 4.9862 -0.9366 21 1 11.6312 4.3206 -1.3693 22 6 11.2219 5.7395 0.1837 23 7 10.3310 6.5540 0.7083 24 14 12.9239 5.6037 0.9416 25 1 13.0168 6.5088 2.1151 26 1 13.1619 4.2037 1.3761 27 1 13.9459 5.9904 -0.0640 28 6 3.4312 1.2848 0.0000 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 0.2128 2.3203 0.0003 33 1 1.3340 4.5114 0.0021 34 1 3.7923 4.6381 0.0113 35 1 7.2357 1.2508 0.1425 36 1 5.8071 0.7485 1.0775 37 1 5.8169 0.5753 -0.6940 38 1 5.6068 4.4657 1.0737 39 1 5.6844 3.0205 2.1098 40 1 7.1130 3.5230 1.1741 41 1 7.9765 3.2891 -0.7687 42 1 7.3019 5.0435 -2.8767 43 1 7.5503 3.4179 -3.5577 44 1 10.8338 5.2531 -3.8552 45 1 9.5975 4.3963 -4.8069 46 1 9.2729 6.7623 -4.8515 47 1 8.9937 5.6836 -1.1036 48 1 9.4474 6.6248 0.3146 49 1 4.0207 0.3800 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700820141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:20 Heat of formation + Delta-G solvation = -88.984512 kcal Electronic energy + Delta-G solvation = -29803.455473 eV Core-core repulsion = 25731.257513 eV Total energy + Delta-G solvation = -4072.197960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68786 -39.58484 -37.77676 -37.05048 -34.99578 -34.95446 -33.64011 -31.39305 -30.81549 -29.47680 -28.04237 -27.74257 -27.02023 -25.48889 -23.80355 -23.41539 -22.16832 -21.49036 -20.26741 -19.26659 -18.05384 -17.63145 -16.71140 -16.57173 -16.27654 -16.02142 -15.89022 -15.79833 -14.91581 -14.86650 -14.22367 -14.10623 -13.94104 -13.71913 -13.68742 -13.46881 -13.34188 -13.18131 -12.73547 -12.43391 -12.38572 -12.18288 -12.04842 -11.88778 -11.80065 -11.48455 -11.40736 -11.19787 -10.97178 -10.83887 -10.77762 -10.65012 -10.43876 -10.04195 -9.54479 -9.40206 -9.20063 -8.99942 -8.82909 -8.60428 -8.19237 -7.11750 -6.15083 -3.16579 1.28747 1.47599 2.95175 3.11061 3.47101 3.47965 3.50553 3.67920 3.88670 4.46802 4.60016 4.68916 4.82948 4.85407 4.90488 4.92322 4.95462 5.00348 5.14642 5.21029 5.32688 5.33774 5.45141 5.45728 5.53403 5.56826 5.61313 5.74174 5.81325 5.83584 5.89404 5.95736 5.96961 5.97416 6.08716 6.23334 6.26508 6.30918 6.40212 6.45659 6.63930 6.66855 6.71393 6.88287 7.31071 7.72137 7.92813 8.12791 8.58057 8.70702 9.15203 10.01953 10.17726 11.32497 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002751 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.599683 B =10174.452984 C =10975.702127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.126 4.126 7 C -0.012 4.012 8 C -0.043 4.043 9 C -0.143 4.143 10 C -0.141 4.141 11 C 0.521 3.479 12 O -0.543 6.543 13 N -0.712 5.712 14 C 0.118 3.882 15 C 0.172 3.828 16 H 0.066 0.934 17 C 0.060 3.940 18 O -0.562 6.562 19 N -0.724 5.724 20 C -0.339 4.339 21 H 0.064 0.936 22 C -0.039 4.039 23 N -0.938 5.938 24 Si 1.078 2.922 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.296 1.296 28 C -0.146 4.146 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.408 0.592 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.027 0.973 46 H 0.365 0.635 47 H 0.372 0.628 48 H 0.257 0.743 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 -11.253 -1.972 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.144 4.144 7 C -0.013 4.013 8 C -0.046 4.046 9 C -0.201 4.201 10 C -0.198 4.198 11 C 0.306 3.694 12 O -0.420 6.420 13 N -0.364 5.364 14 C -0.006 4.006 15 C 0.060 3.940 16 H 0.084 0.916 17 C -0.022 4.022 18 O -0.365 6.365 19 N -0.366 5.366 20 C -0.469 4.469 21 H 0.082 0.918 22 C -0.238 4.238 23 N -0.582 5.582 24 Si 0.909 3.091 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.224 1.224 28 C -0.165 4.165 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.245 0.755 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.209 0.791 47 H 0.205 0.795 48 H 0.069 0.931 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.740 -11.071 -0.879 18.456 hybrid contribution -0.727 -0.034 -1.585 1.743 sum -15.467 -11.105 -2.464 19.199 Atomic orbital electron populations 1.23013 0.78695 1.03661 1.01266 1.86048 1.21131 1.27141 1.89050 1.18905 0.92174 0.83989 0.97325 1.21161 0.99672 0.92491 1.09681 1.20861 0.94446 0.96898 0.97727 1.20877 0.93587 0.98201 1.01765 1.19086 0.93227 0.92467 0.96512 1.19733 0.92168 0.97881 0.94833 1.21953 1.01448 0.93866 1.02814 1.21920 1.02530 0.99311 0.96033 1.20218 0.82456 0.78366 0.88325 1.90685 1.53933 1.53280 1.44097 1.45982 1.08103 1.62869 1.19410 1.21546 0.95616 0.98313 0.85161 1.20520 0.91613 0.94349 0.87475 0.91607 1.23020 0.95679 0.85694 0.97791 1.86547 1.64769 1.35597 1.49612 1.42355 1.14100 1.50113 1.30077 1.20004 0.90788 1.24588 1.11563 0.91842 1.25720 1.05769 0.96371 0.95936 1.70861 1.05974 1.38577 1.42814 0.83270 0.74094 0.75583 0.76152 1.21069 1.22254 1.22397 1.20337 0.91243 0.98287 1.06621 0.88443 0.92782 0.92769 0.85832 0.85880 0.86040 0.91270 0.90949 0.91729 0.91657 0.91289 0.90740 0.75535 0.90762 0.92153 0.93275 0.95446 0.79065 0.79454 0.93145 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.74 10.50 -19.43 -0.20 -3.95 16 3 C 0.12 1.56 6.69 -39.22 -0.26 1.30 16 4 C -0.21 -2.48 9.04 -39.44 -0.36 -2.84 16 5 C -0.08 -1.01 10.04 -39.60 -0.40 -1.40 16 6 C -0.13 -1.79 8.38 -39.56 -0.33 -2.12 16 7 C -0.01 -0.18 4.23 -104.64 -0.44 -0.62 16 8 C -0.04 -0.60 0.72 -156.81 -0.11 -0.71 16 9 C -0.14 -1.68 7.11 37.16 0.26 -1.41 16 10 C -0.14 -1.89 8.07 37.16 0.30 -1.59 16 11 C 0.52 8.88 6.35 -10.99 -0.07 8.81 16 12 O -0.54 -10.95 15.54 5.56 0.09 -10.87 16 13 N -0.71 -12.08 5.22 -60.29 -0.31 -12.39 16 14 C 0.12 2.11 5.12 -4.04 -0.02 2.09 16 15 C 0.17 3.26 2.84 -67.94 -0.19 3.07 16 16 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 17 C 0.06 1.04 6.85 37.16 0.25 1.30 16 18 O -0.56 -10.06 12.64 -35.23 -0.45 -10.50 16 19 N -0.72 -16.90 4.51 -53.43 -0.24 -17.15 16 20 C -0.34 -8.86 9.93 -15.06 -0.15 -9.01 16 21 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 22 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 23 N -0.94 -27.86 13.70 55.49 0.76 -27.10 16 24 Si 1.08 24.86 29.92 -169.99 -5.09 19.78 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.30 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 28 C -0.15 -1.98 8.93 -39.43 -0.35 -2.33 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 32 H 0.12 1.12 6.30 -52.48 -0.33 0.79 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.75 7.23 -52.49 -0.38 1.37 16 35 H 0.07 0.78 7.96 -51.93 -0.41 0.37 16 36 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 37 H 0.06 0.75 7.25 -51.93 -0.38 0.37 16 38 H 0.06 0.91 7.08 -51.93 -0.37 0.54 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.06 7.27 -51.93 -0.38 0.68 16 41 H 0.41 6.92 7.05 -40.82 -0.29 6.63 16 42 H 0.07 1.50 7.39 -51.93 -0.38 1.11 16 43 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 44 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.36 4.72 9.12 45.56 0.42 5.14 16 47 H 0.37 9.40 6.63 -40.82 -0.27 9.13 16 48 H 0.26 7.62 6.77 -40.82 -0.28 7.34 16 49 H 0.13 1.63 5.91 -52.49 -0.31 1.32 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -33.72 396.69 -7.16 -40.88 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -6.72 Total: 20.78 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.97 Total: -5.46 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.20 Total: -56.64 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.56 Total: -25.31 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.72 -7.16 -40.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700820141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.104 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds