Wall clock time and date at job start Sat Apr 11 2020 04:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46825 * 2 1 4 4 C 1.52997 * 109.47200 * 59.99832 * 3 2 1 5 5 C 1.52999 * 109.47034 * 299.99741 * 3 2 1 6 6 C 1.50703 * 109.47050 * 179.97438 * 3 2 1 7 7 O 1.21283 * 120.00291 * 1.65980 * 6 3 2 8 8 N 1.34775 * 119.99738 * 181.93128 * 6 3 2 9 9 C 1.48147 * 127.83500 * 183.84302 * 8 6 3 10 10 C 1.54796 * 104.41717 * 140.37336 * 9 8 6 11 11 H 1.08994 * 110.20311 * 142.94127 * 10 9 8 12 12 C 1.53004 * 110.60934 * 265.18065 * 10 9 8 13 13 N 1.46502 * 109.46981 * 290.64158 * 12 10 9 14 14 C 1.36937 * 120.00183 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99365 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00224 * 180.02562 * 14 13 12 17 17 N 1.31613 * 120.00178 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99745 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47432 * 59.99872 * 18 16 14 20 20 H 1.48504 * 109.47137 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47491 * 299.99891 * 18 16 14 22 22 C 1.54282 * 104.92123 * 24.16211 * 10 9 8 23 23 H 1.09000 * 110.34509 * 240.94142 * 22 10 9 24 24 C 1.52999 * 110.42941 * 118.72377 * 22 10 9 25 25 F 1.39900 * 109.47392 * 302.95843 * 24 22 10 26 26 F 1.39894 * 109.47037 * 62.96262 * 24 22 10 27 27 F 1.39906 * 109.46905 * 182.95806 * 24 22 10 28 28 C 1.48147 * 127.84196 * 4.17080 * 8 6 3 29 29 H 1.08994 * 109.47182 * 60.00545 * 1 2 3 30 30 H 1.09006 * 109.46552 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47559 * 299.99695 * 1 2 3 32 32 H 1.08997 * 109.47895 * 239.99628 * 2 1 3 33 33 H 1.09008 * 109.47193 * 119.99534 * 2 1 3 34 34 H 1.08999 * 109.47034 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.46858 * 299.99848 * 4 3 2 36 36 H 1.08994 * 109.47361 * 60.00206 * 4 3 2 37 37 H 1.08999 * 109.47098 * 307.27369 * 5 3 2 38 38 H 1.08996 * 109.47197 * 67.27273 * 5 3 2 39 39 H 1.09001 * 109.47232 * 187.27796 * 5 3 2 40 40 H 1.09002 * 110.40882 * 259.19914 * 9 8 6 41 41 H 1.09000 * 110.41088 * 21.63699 * 9 8 6 42 42 H 1.09001 * 109.47507 * 50.64498 * 12 10 9 43 43 H 1.09007 * 109.46760 * 170.64968 * 12 10 9 44 44 H 0.97000 * 120.00053 * 0.02562 * 13 12 10 45 45 H 0.97000 * 120.00101 * 180.02562 * 17 16 14 46 46 H 1.08999 * 110.40238 * 338.36254 * 28 8 6 47 47 H 1.08995 * 110.41057 * 100.79354 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5298 2.1638 1.2492 5 6 1.5299 2.1637 -1.2493 6 6 3.5469 1.4426 0.0006 7 8 4.1534 0.3928 -0.0294 8 7 4.2207 2.6092 0.0401 9 6 5.6860 2.8151 -0.0309 10 6 5.8560 4.0736 -0.9160 11 1 6.6821 4.6828 -0.5495 12 6 6.0944 3.6779 -2.3746 13 7 7.4164 3.0598 -2.5032 14 6 7.8521 2.6230 -3.7257 15 1 7.2212 2.7346 -4.5952 16 6 9.1045 2.0369 -3.8473 17 7 9.8730 1.9005 -2.7876 18 14 9.6991 1.4418 -5.5151 19 1 9.7447 2.5853 -6.4615 20 1 11.0582 0.8595 -5.3773 21 1 8.7673 0.4079 -6.0328 22 6 4.5233 4.8387 -0.7788 23 1 4.0376 4.9311 -1.7502 24 6 4.7619 6.2223 -0.1708 25 9 5.4000 6.0842 1.0666 26 9 5.5684 6.9763 -1.0298 27 9 3.5354 6.8714 0.0069 28 6 3.6644 3.9760 0.1709 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.8935 3.1913 1.2494 35 1 0.4398 2.1637 1.2491 36 1 1.8932 1.6501 2.1392 37 1 1.7832 1.5803 -2.1344 38 1 0.4477 2.2777 -1.1867 39 1 1.9956 3.1470 -1.3168 40 1 6.0940 2.9899 0.9647 41 1 6.1688 1.9550 -0.4948 42 1 5.3292 2.9678 -2.6882 43 1 6.0458 4.5662 -3.0046 44 1 7.9831 2.9600 -1.7223 45 1 10.7483 1.4913 -2.8727 46 1 2.6200 3.9927 -0.1407 47 1 3.7614 4.3293 1.1974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700927768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:24 Heat of formation + Delta-G solvation = -180.188902 kcal Electronic energy + Delta-G solvation = -31652.299396 eV Core-core repulsion = 27034.289777 eV Total energy + Delta-G solvation = -4618.009619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.18685 -47.68594 -47.61446 -40.67125 -38.29896 -36.36066 -34.68787 -32.60546 -31.18589 -30.53917 -28.81233 -27.65250 -26.26295 -25.69123 -24.75215 -23.49704 -21.88069 -21.04115 -20.13624 -18.91749 -18.56619 -18.23030 -17.67293 -17.10207 -16.52099 -16.15583 -15.47600 -14.94716 -14.76570 -14.62221 -14.49640 -14.28753 -14.10706 -14.06148 -13.98126 -13.77505 -13.75716 -13.68449 -13.37661 -13.15169 -12.77194 -12.75194 -12.49578 -12.36407 -12.10908 -11.96451 -11.82434 -11.66201 -11.45228 -11.37150 -11.06986 -10.90152 -10.79756 -10.75045 -10.65984 -10.57702 -10.09067 -9.71763 -9.59238 -8.90126 -8.73800 -6.95912 -5.76838 -3.06627 2.52833 2.68942 2.93773 3.45307 3.49426 3.50478 3.66433 3.71567 3.88015 4.27001 4.41635 4.49759 4.54993 4.63813 4.68025 4.85099 4.93127 5.03573 5.11736 5.14151 5.17273 5.25151 5.32413 5.38785 5.50151 5.54131 5.56504 5.60259 5.71981 5.72638 5.79503 5.85454 5.92660 5.96483 6.05584 6.11439 6.19222 6.28610 6.30034 6.57065 6.68283 7.53557 7.68602 8.20722 8.40815 9.52494 10.06596 10.41341 11.45762 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008892 B = 0.004439 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.101906 B = 6306.730748 C = 8623.904122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.078 4.078 4 C -0.152 4.152 5 C -0.149 4.149 6 C 0.545 3.455 7 O -0.526 6.526 8 N -0.615 5.615 9 C 0.110 3.890 10 C -0.100 4.100 11 H 0.097 0.903 12 C 0.165 3.835 13 N -0.729 5.729 14 C -0.243 4.243 15 H 0.069 0.931 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.286 1.286 22 C -0.151 4.151 23 H 0.128 0.872 24 C 0.461 3.539 25 F -0.180 7.180 26 F -0.175 7.175 27 F -0.186 7.186 28 C 0.101 3.899 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.103 0.897 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 6.371 9.515 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.081 4.081 4 C -0.209 4.209 5 C -0.206 4.206 6 C 0.333 3.667 7 O -0.401 6.401 8 N -0.350 5.350 9 C -0.012 4.012 10 C -0.120 4.120 11 H 0.116 0.884 12 C 0.037 3.963 13 N -0.374 5.374 14 C -0.374 4.374 15 H 0.087 0.913 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.172 4.172 23 H 0.146 0.854 24 C 0.407 3.593 25 F -0.161 7.161 26 F -0.156 7.156 27 F -0.167 7.167 28 C -0.023 4.023 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.121 0.879 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.341 5.649 9.338 23.083 hybrid contribution 0.726 0.076 -0.584 0.935 sum -19.614 5.725 8.754 22.229 Atomic orbital electron populations 1.21897 0.95497 1.01801 1.01910 1.21372 0.95344 0.93527 1.03600 1.20777 0.91034 0.98550 0.97762 1.22128 1.02020 1.00491 0.96234 1.22070 1.01682 1.00500 0.96377 1.20203 0.89254 0.81814 0.75410 1.90751 1.70117 1.30163 1.49030 1.48831 1.08106 1.04835 1.73202 1.22582 0.80225 0.99048 0.99358 1.22461 0.94009 0.95913 0.99614 0.88438 1.20648 0.89803 0.95845 0.89956 1.42280 1.14068 1.72076 1.08969 1.19122 0.99107 1.32298 0.86867 0.91261 1.24726 0.97040 1.01564 0.97267 1.69638 1.10878 1.49600 1.27818 0.86264 0.77793 0.78558 0.83533 1.21244 1.21634 1.21237 1.23535 1.01333 0.89980 1.02327 0.85367 1.20345 0.73940 0.88513 0.76545 1.93184 1.82389 1.95964 1.44586 1.93231 1.73883 1.78542 1.69949 1.93176 1.44140 1.83915 1.95488 1.22622 0.98402 0.82334 0.98947 0.92384 0.92593 0.92479 0.91012 0.91310 0.91650 0.91002 0.92031 0.91598 0.91087 0.91692 0.90920 0.87598 0.95891 0.95753 0.78148 0.93382 0.87866 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.21 37.15 0.34 -0.82 16 2 C -0.10 -1.05 4.28 -26.73 -0.11 -1.17 16 3 C -0.08 -0.81 0.52 -155.66 -0.08 -0.89 16 4 C -0.15 -1.20 7.86 37.16 0.29 -0.90 16 5 C -0.15 -1.31 7.67 37.16 0.29 -1.02 16 6 C 0.54 7.99 6.62 -10.98 -0.07 7.92 16 7 O -0.53 -10.18 16.28 5.56 0.09 -10.09 16 8 N -0.62 -8.22 3.29 -169.05 -0.56 -8.77 16 9 C 0.11 1.71 6.49 -2.19 -0.01 1.69 16 10 C -0.10 -1.50 2.39 -89.00 -0.21 -1.71 16 11 H 0.10 1.51 7.40 -51.93 -0.38 1.12 16 12 C 0.17 3.17 5.39 -4.04 -0.02 3.15 16 13 N -0.73 -18.15 5.23 -59.90 -0.31 -18.47 16 14 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 18 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C -0.15 -1.68 2.72 -89.22 -0.24 -1.92 16 23 H 0.13 1.28 7.71 -51.93 -0.40 0.88 16 24 C 0.46 5.21 2.51 37.16 0.09 5.31 16 25 F -0.18 -2.14 16.05 2.25 0.04 -2.11 16 26 F -0.17 -2.32 17.07 2.25 0.04 -2.28 16 27 F -0.19 -1.92 17.11 2.25 0.04 -1.88 16 28 C 0.10 0.99 4.05 -2.40 -0.01 0.98 16 29 H 0.06 0.40 6.60 -51.93 -0.34 0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 32 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.07 0.78 8.12 -51.92 -0.42 0.36 16 34 H 0.06 0.46 4.88 -51.93 -0.25 0.21 16 35 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.47 6.83 -51.93 -0.35 0.12 16 39 H 0.06 0.53 5.12 -51.93 -0.27 0.27 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.11 2.09 7.38 -51.93 -0.38 1.70 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.38 10.03 7.61 -40.82 -0.31 9.72 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.10 0.79 3.92 -51.93 -0.20 0.58 16 47 H 0.08 0.73 7.27 -51.93 -0.38 0.35 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -32.82 372.90 -6.21 -39.03 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.87 Total: 5.58 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 0.00 Total: 3.27 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.14 Total: -54.75 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.82 -6.21 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700927768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.158 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds