Wall clock time and date at job start Sat Apr 11 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47214 * 2 1 4 4 C 1.52994 * 109.47127 * 59.99991 * 3 2 1 5 5 C 1.53001 * 109.47405 * 299.99858 * 3 2 1 6 6 C 1.50699 * 109.47406 * 179.97438 * 3 2 1 7 7 O 1.21284 * 119.99936 * 357.14535 * 6 3 2 8 8 N 1.34777 * 120.00269 * 177.14322 * 6 3 2 9 9 C 1.48142 * 127.83632 * 355.04495 * 8 6 3 10 10 C 1.54391 * 104.61416 * 140.41631 * 9 8 6 11 11 H 1.08996 * 110.34286 * 264.99138 * 10 9 8 12 12 C 1.52998 * 110.34391 * 142.73957 * 10 9 8 13 13 F 1.39901 * 109.47392 * 61.45035 * 12 10 9 14 14 F 1.39898 * 109.47640 * 181.45076 * 12 10 9 15 15 F 1.39903 * 109.47058 * 301.45203 * 12 10 9 16 16 C 1.54282 * 104.96349 * 23.86877 * 10 9 8 17 17 H 1.08997 * 110.43507 * 118.91584 * 16 10 9 18 18 C 1.53005 * 110.34287 * 241.12966 * 16 10 9 19 19 N 1.46500 * 109.47111 * 181.98753 * 18 16 10 20 20 C 1.36938 * 119.99971 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99645 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00135 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99995 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47271 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47181 * 120.00088 * 24 22 20 27 27 H 1.48501 * 109.47114 * 240.00364 * 24 22 20 28 28 C 1.48152 * 127.83662 * 175.04910 * 8 6 3 29 29 H 1.09004 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47296 * 300.00136 * 1 2 3 31 31 H 1.09007 * 109.47258 * 60.00108 * 1 2 3 32 32 H 1.09010 * 109.47169 * 239.99852 * 2 1 3 33 33 H 1.08999 * 109.47062 * 120.00151 * 2 1 3 34 34 H 1.09002 * 109.47431 * 173.35921 * 4 3 2 35 35 H 1.08998 * 109.47386 * 293.36412 * 4 3 2 36 36 H 1.08996 * 109.47469 * 53.36326 * 4 3 2 37 37 H 1.08998 * 109.47259 * 300.00320 * 5 3 2 38 38 H 1.08999 * 109.46860 * 59.99793 * 5 3 2 39 39 H 1.08997 * 109.47571 * 179.97438 * 5 3 2 40 40 H 1.09007 * 110.41129 * 259.19678 * 9 8 6 41 41 H 1.08998 * 110.41040 * 21.63099 * 9 8 6 42 42 H 1.08997 * 109.46870 * 301.99022 * 18 16 10 43 43 H 1.09010 * 109.46709 * 61.98838 * 18 16 10 44 44 H 0.96997 * 119.99743 * 0.02562 * 19 18 16 45 45 H 0.97003 * 120.00032 * 180.02562 * 23 22 20 46 46 H 1.08995 * 110.40913 * 338.36519 * 28 8 6 47 47 H 1.08993 * 110.40879 * 100.68738 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1534 0.3935 0.0534 8 7 4.2209 2.6082 -0.0574 9 6 3.6659 3.9712 -0.2271 10 6 4.5123 4.8563 0.7131 11 1 4.0143 4.9710 1.6757 12 6 4.7605 6.2246 0.0750 13 9 3.5371 6.8698 -0.1353 14 9 5.5557 6.9990 0.9265 15 9 5.4155 6.0561 -1.1497 16 6 5.8434 4.0954 0.8851 17 1 6.6752 4.6955 0.5161 18 6 6.0621 3.7317 2.3551 19 7 7.3518 3.0528 2.5036 20 6 7.7654 2.6313 3.7391 21 1 7.1406 2.7990 4.6039 22 6 8.9871 1.9875 3.8797 23 7 9.7482 1.7827 2.8256 24 14 9.5517 1.4132 5.5651 25 1 8.5224 1.7616 6.5773 26 1 9.7483 -0.0586 5.5463 27 1 10.8328 2.0794 5.9116 28 6 5.6847 2.8172 0.0338 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9871 3.1513 1.3107 35 1 0.4465 2.2677 1.1918 36 1 1.7931 1.5859 2.1352 37 1 1.8933 1.6499 -2.1392 38 1 0.4400 2.1637 -1.2493 39 1 1.8930 3.1915 -1.2490 40 1 3.7759 4.3006 -1.2603 41 1 2.6176 3.9946 0.0706 42 1 6.0577 4.6395 2.9584 43 1 5.2625 3.0700 2.6884 44 1 7.9130 2.9025 1.7268 45 1 10.6018 1.3325 2.9238 46 1 6.1595 1.9698 0.5284 47 1 6.1103 2.9642 -0.9587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700927770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:30 Heat of formation + Delta-G solvation = -180.150917 kcal Electronic energy + Delta-G solvation = -31678.371663 eV Core-core repulsion = 27060.363691 eV Total energy + Delta-G solvation = -4618.007972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.19133 -47.68951 -47.61961 -40.66834 -38.31063 -36.35075 -34.69212 -32.60577 -31.19475 -30.52953 -28.81569 -27.64243 -26.25816 -25.69242 -24.74739 -23.50945 -21.88533 -21.04027 -20.11382 -18.91680 -18.57175 -18.22989 -17.67331 -17.12085 -16.50980 -16.15019 -15.46487 -14.93236 -14.76346 -14.62482 -14.49883 -14.28076 -14.10948 -14.06380 -13.99120 -13.77722 -13.76087 -13.68671 -13.36882 -13.15073 -12.78103 -12.74133 -12.49716 -12.35638 -12.09434 -11.96515 -11.83090 -11.64193 -11.44400 -11.37381 -11.07539 -10.90829 -10.78860 -10.78022 -10.65460 -10.56182 -10.03445 -9.72868 -9.58199 -8.91094 -8.72851 -6.96080 -5.77459 -3.07177 2.52709 2.70141 2.94401 3.44227 3.49383 3.51866 3.66222 3.71334 3.87760 4.27829 4.42145 4.49694 4.55068 4.64179 4.68602 4.85060 4.93887 5.04766 5.12313 5.14224 5.18857 5.25915 5.32829 5.39086 5.50623 5.54850 5.56480 5.60198 5.72041 5.73323 5.80151 5.86258 5.93252 5.96974 6.05954 6.12248 6.19485 6.29335 6.32107 6.56827 6.67681 7.54706 7.69301 8.21955 8.40145 9.52033 10.06055 10.40711 11.45269 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004510 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.769195 B = 6206.744154 C = 8565.576199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.078 4.078 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.545 3.455 7 O -0.525 6.525 8 N -0.615 5.615 9 C 0.101 3.899 10 C -0.151 4.151 11 H 0.128 0.872 12 C 0.461 3.539 13 F -0.186 7.186 14 F -0.175 7.175 15 F -0.180 7.180 16 C -0.101 4.101 17 H 0.098 0.902 18 C 0.165 3.835 19 N -0.729 5.729 20 C -0.242 4.242 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.109 3.891 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.107 0.893 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.334 6.666 -9.743 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.081 4.081 4 C -0.205 4.205 5 C -0.210 4.210 6 C 0.333 3.667 7 O -0.400 6.400 8 N -0.350 5.350 9 C -0.022 4.022 10 C -0.172 4.172 11 H 0.146 0.854 12 C 0.407 3.593 13 F -0.167 7.167 14 F -0.156 7.156 15 F -0.161 7.161 16 C -0.120 4.120 17 H 0.116 0.884 18 C 0.037 3.963 19 N -0.374 5.374 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.013 4.013 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.125 0.875 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.046 5.953 -9.544 22.986 hybrid contribution 0.726 0.059 0.572 0.926 sum -19.320 6.012 -8.971 22.134 Atomic orbital electron populations 1.21899 0.95502 1.01796 1.01907 1.21370 0.95339 0.93538 1.03601 1.20773 0.91045 0.98541 0.97754 1.22041 1.01654 1.00444 0.96367 1.22161 1.02042 1.00551 0.96257 1.20200 0.89242 0.81812 0.75429 1.90753 1.70117 1.30179 1.48938 1.48823 1.08215 1.05073 1.72852 1.22614 0.98451 0.82274 0.98907 1.23538 1.01363 0.90206 1.02059 0.85353 1.20347 0.73977 0.88187 0.76829 1.93176 1.44388 1.84045 1.95105 1.93229 1.74529 1.77479 1.70397 1.93185 1.81651 1.95570 1.45709 1.22394 0.94080 0.95846 0.99712 0.88426 1.20652 0.90252 0.95557 0.89833 1.42298 1.17485 1.69392 1.08238 1.19210 1.01104 1.30669 0.86264 0.91145 1.24730 0.97289 1.01378 0.97260 1.69660 1.12713 1.47664 1.27842 0.86121 0.78309 0.78198 0.83563 1.20568 1.21811 1.21819 1.22507 0.80300 0.98867 0.99610 0.92595 0.92381 0.92487 0.91337 0.90983 0.91790 0.91090 0.91600 0.92028 0.91021 0.91560 0.89939 0.87908 0.95723 0.95910 0.78144 0.93484 0.87488 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.21 37.16 0.34 -0.83 16 2 C -0.10 -1.06 4.28 -26.74 -0.11 -1.18 16 3 C -0.08 -0.81 0.52 -155.67 -0.08 -0.90 16 4 C -0.15 -1.32 7.69 37.15 0.29 -1.03 16 5 C -0.15 -1.22 7.85 37.16 0.29 -0.92 16 6 C 0.54 8.06 6.62 -10.99 -0.07 7.99 16 7 O -0.53 -10.26 16.28 5.55 0.09 -10.17 16 8 N -0.62 -8.28 3.29 -169.30 -0.56 -8.84 16 9 C 0.10 1.00 4.06 -2.41 -0.01 0.99 16 10 C -0.15 -1.68 2.73 -89.22 -0.24 -1.92 16 11 H 0.13 1.28 7.71 -51.93 -0.40 0.88 16 12 C 0.46 5.19 2.51 37.16 0.09 5.28 16 13 F -0.19 -1.91 17.11 2.25 0.04 -1.87 16 14 F -0.18 -2.30 17.07 2.25 0.04 -2.26 16 15 F -0.18 -2.13 16.04 2.25 0.04 -2.10 16 16 C -0.10 -1.50 2.42 -89.22 -0.22 -1.71 16 17 H 0.10 1.50 7.40 -51.93 -0.38 1.11 16 18 C 0.16 3.15 5.41 -4.04 -0.02 3.13 16 19 N -0.73 -18.12 5.12 -59.90 -0.31 -18.43 16 20 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 24 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C 0.11 1.71 6.38 -2.40 -0.02 1.69 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 6.58 -51.93 -0.34 0.06 16 31 H 0.06 0.38 6.43 -51.92 -0.33 0.04 16 32 H 0.07 0.79 8.13 -51.92 -0.42 0.36 16 33 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.06 0.53 5.28 -51.93 -0.27 0.26 16 35 H 0.07 0.48 6.80 -51.93 -0.35 0.13 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 39 H 0.07 0.47 4.73 -51.93 -0.25 0.22 16 40 H 0.08 0.73 7.29 -51.93 -0.38 0.36 16 41 H 0.10 0.79 3.92 -51.93 -0.20 0.59 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 44 H 0.38 10.02 7.39 -40.82 -0.30 9.72 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 46 H 0.11 2.13 7.12 -51.93 -0.37 1.76 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -32.86 372.29 -6.20 -39.06 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.84 Total: 5.61 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.01 Total: 3.28 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.14 Total: -54.77 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.11 Total: -6.23 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.86 -6.20 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700927770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.091 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds