Wall clock time and date at job start Sat Apr 11 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47214 * 2 1 4 4 C 1.52994 * 109.47127 * 59.99991 * 3 2 1 5 5 C 1.53001 * 109.47405 * 299.99858 * 3 2 1 6 6 C 1.50699 * 109.47406 * 179.97438 * 3 2 1 7 7 O 1.21284 * 119.99936 * 357.14535 * 6 3 2 8 8 N 1.34777 * 120.00269 * 177.14322 * 6 3 2 9 9 C 1.48142 * 127.83632 * 355.04495 * 8 6 3 10 10 C 1.54391 * 104.61416 * 140.41631 * 9 8 6 11 11 H 1.08996 * 110.34286 * 264.99138 * 10 9 8 12 12 C 1.52998 * 110.34391 * 142.73957 * 10 9 8 13 13 F 1.39901 * 109.47392 * 61.45035 * 12 10 9 14 14 F 1.39898 * 109.47640 * 181.45076 * 12 10 9 15 15 F 1.39903 * 109.47058 * 301.45203 * 12 10 9 16 16 C 1.54282 * 104.96349 * 23.86877 * 10 9 8 17 17 H 1.08997 * 110.43507 * 118.91584 * 16 10 9 18 18 C 1.53005 * 110.34287 * 241.12966 * 16 10 9 19 19 N 1.46500 * 109.47111 * 181.98753 * 18 16 10 20 20 C 1.36938 * 119.99971 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99645 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00135 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99995 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47271 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47181 * 120.00088 * 24 22 20 27 27 H 1.48501 * 109.47114 * 240.00364 * 24 22 20 28 28 C 1.48152 * 127.83662 * 175.04910 * 8 6 3 29 29 H 1.09004 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47296 * 300.00136 * 1 2 3 31 31 H 1.09007 * 109.47258 * 60.00108 * 1 2 3 32 32 H 1.09010 * 109.47169 * 239.99852 * 2 1 3 33 33 H 1.08999 * 109.47062 * 120.00151 * 2 1 3 34 34 H 1.09002 * 109.47431 * 173.35921 * 4 3 2 35 35 H 1.08998 * 109.47386 * 293.36412 * 4 3 2 36 36 H 1.08996 * 109.47469 * 53.36326 * 4 3 2 37 37 H 1.08998 * 109.47259 * 300.00320 * 5 3 2 38 38 H 1.08999 * 109.46860 * 59.99793 * 5 3 2 39 39 H 1.08997 * 109.47571 * 179.97438 * 5 3 2 40 40 H 1.09007 * 110.41129 * 259.19678 * 9 8 6 41 41 H 1.08998 * 110.41040 * 21.63099 * 9 8 6 42 42 H 1.08997 * 109.46870 * 301.99022 * 18 16 10 43 43 H 1.09010 * 109.46709 * 61.98838 * 18 16 10 44 44 H 0.96997 * 119.99743 * 0.02562 * 19 18 16 45 45 H 0.97003 * 120.00032 * 180.02562 * 23 22 20 46 46 H 1.08995 * 110.40913 * 338.36519 * 28 8 6 47 47 H 1.08993 * 110.40879 * 100.68738 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1534 0.3935 0.0534 8 7 4.2209 2.6082 -0.0574 9 6 3.6659 3.9712 -0.2271 10 6 4.5123 4.8563 0.7131 11 1 4.0143 4.9710 1.6757 12 6 4.7605 6.2246 0.0750 13 9 3.5371 6.8698 -0.1353 14 9 5.5557 6.9990 0.9265 15 9 5.4155 6.0561 -1.1497 16 6 5.8434 4.0954 0.8851 17 1 6.6752 4.6955 0.5161 18 6 6.0621 3.7317 2.3551 19 7 7.3518 3.0528 2.5036 20 6 7.7654 2.6313 3.7391 21 1 7.1406 2.7990 4.6039 22 6 8.9871 1.9875 3.8797 23 7 9.7482 1.7827 2.8256 24 14 9.5517 1.4132 5.5651 25 1 8.5224 1.7616 6.5773 26 1 9.7483 -0.0586 5.5463 27 1 10.8328 2.0794 5.9116 28 6 5.6847 2.8172 0.0338 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9871 3.1513 1.3107 35 1 0.4465 2.2677 1.1918 36 1 1.7931 1.5859 2.1352 37 1 1.8933 1.6499 -2.1392 38 1 0.4400 2.1637 -1.2493 39 1 1.8930 3.1915 -1.2490 40 1 3.7759 4.3006 -1.2603 41 1 2.6176 3.9946 0.0706 42 1 6.0577 4.6395 2.9584 43 1 5.2625 3.0700 2.6884 44 1 7.9130 2.9025 1.7268 45 1 10.6018 1.3325 2.9238 46 1 6.1595 1.9698 0.5284 47 1 6.1103 2.9642 -0.9587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700927770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:30 Heat of formation + Delta-G solvation = -201.095264 kcal Electronic energy + Delta-G solvation = -31679.279878 eV Core-core repulsion = 27060.363691 eV Total energy + Delta-G solvation = -4618.916187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.10567 -48.57801 -48.56194 -41.74919 -39.46389 -37.36298 -36.47850 -34.07146 -32.77968 -31.44580 -30.18357 -28.29459 -27.39477 -27.06042 -25.67686 -25.10259 -23.25262 -22.00839 -21.32422 -19.93662 -19.56644 -19.23141 -19.03668 -18.60957 -17.65078 -17.10858 -16.71254 -16.53463 -15.84198 -15.71201 -15.50965 -15.38091 -15.23757 -15.19391 -15.01967 -14.98618 -14.85291 -14.69154 -14.62887 -14.35739 -13.92186 -13.57372 -13.49241 -13.39391 -13.23623 -12.99276 -12.96673 -12.81289 -12.74447 -12.62091 -12.31305 -12.19188 -12.13693 -12.05829 -11.92107 -11.70977 -11.55479 -11.41757 -11.00663 -10.72205 -9.89738 -9.04672 -7.98404 -5.27621 1.44246 1.45849 1.50683 1.55317 1.61956 1.91135 2.51214 2.71400 2.74429 2.93336 3.33739 3.36791 3.52392 3.57645 3.74296 3.76774 3.88997 3.92175 4.05822 4.18029 4.22229 4.32649 4.37975 4.45483 4.56330 4.61422 4.67121 4.70738 4.74188 4.77524 4.89719 4.93204 4.95055 5.03476 5.09692 5.13356 5.16862 5.20578 5.26206 5.42452 5.45875 5.55479 6.23308 6.45367 7.07695 7.30140 8.03481 8.26024 9.25287 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004510 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.769195 B = 6206.744154 C = 8565.576199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.072 4.072 4 C -0.147 4.147 5 C -0.149 4.149 6 C 0.534 3.466 7 O -0.588 6.588 8 N -0.613 5.613 9 C 0.102 3.898 10 C -0.141 4.141 11 H 0.148 0.852 12 C 0.469 3.531 13 F -0.173 7.173 14 F -0.187 7.187 15 F -0.183 7.183 16 C -0.090 4.090 17 H 0.094 0.906 18 C 0.166 3.834 19 N -0.743 5.743 20 C -0.246 4.246 21 H 0.076 0.924 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.265 1.265 26 H -0.296 1.296 27 H -0.290 1.290 28 C 0.110 3.890 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.034 0.966 43 H 0.017 0.983 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.056 0.944 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.537 8.768 -9.845 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.075 4.075 4 C -0.204 4.204 5 C -0.206 4.206 6 C 0.325 3.675 7 O -0.467 6.467 8 N -0.346 5.346 9 C -0.020 4.020 10 C -0.162 4.162 11 H 0.166 0.834 12 C 0.414 3.586 13 F -0.154 7.154 14 F -0.168 7.168 15 F -0.164 7.164 16 C -0.110 4.110 17 H 0.112 0.888 18 C 0.040 3.960 19 N -0.386 5.386 20 C -0.377 4.377 21 H 0.094 0.906 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.189 1.189 26 H -0.224 1.224 27 H -0.217 1.217 28 C -0.013 4.013 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.154 0.846 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.309 8.121 -9.641 26.500 hybrid contribution 1.699 -0.588 0.579 1.889 sum -21.611 7.533 -9.062 24.615 Atomic orbital electron populations 1.21864 0.92561 1.02506 1.03376 1.21361 0.97758 0.93490 1.01382 1.20839 0.87367 0.99046 1.00207 1.22087 1.03743 1.00134 0.94407 1.22192 1.03762 1.00595 0.94081 1.21232 0.91208 0.81105 0.73974 1.90719 1.71698 1.32513 1.51801 1.48884 1.07252 1.06484 1.71979 1.22930 0.99692 0.79517 0.99891 1.23483 0.99080 0.90014 1.03585 0.83442 1.20189 0.74094 0.87841 0.76462 1.93204 1.43477 1.83769 1.94996 1.93215 1.74993 1.77777 1.70815 1.93188 1.81823 1.95564 1.45872 1.22135 0.96429 0.95909 0.96502 0.88791 1.20763 0.87430 0.94871 0.92978 1.42506 1.19292 1.69818 1.06995 1.19622 1.00995 1.29578 0.87528 0.90634 1.25554 0.97807 1.02395 1.00794 1.69816 1.13005 1.49098 1.29903 0.85100 0.77991 0.77059 0.79775 1.18917 1.22372 1.21668 1.22292 0.81957 0.97270 0.99754 0.92471 0.91134 0.90569 0.93123 0.93886 0.90778 0.87824 0.93628 0.92894 0.88173 0.90138 0.87940 0.84596 0.94847 0.96482 0.79357 0.94000 0.92536 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.21 71.98 0.66 -1.21 16 2 C -0.10 -2.14 4.28 30.59 0.13 -2.01 16 3 C -0.07 -1.38 0.52 -52.93 -0.03 -1.41 16 4 C -0.15 -2.19 7.69 71.98 0.55 -1.64 16 5 C -0.15 -1.84 7.85 71.98 0.56 -1.27 16 6 C 0.53 16.03 6.62 87.66 0.58 16.61 16 7 O -0.59 -24.62 16.28 -3.04 -0.05 -24.67 16 8 N -0.61 -16.13 3.29 -807.95 -2.66 -18.78 16 9 C 0.10 1.68 4.06 86.54 0.35 2.03 16 10 C -0.14 -2.76 2.73 -9.89 -0.03 -2.78 16 11 H 0.15 2.40 7.71 -2.39 -0.02 2.38 16 12 C 0.47 9.16 2.51 71.98 0.18 9.34 16 13 F -0.17 -2.86 17.11 44.97 0.77 -2.09 16 14 F -0.19 -4.49 17.07 44.97 0.77 -3.72 16 15 F -0.18 -3.88 16.04 44.97 0.72 -3.16 16 16 C -0.09 -2.64 2.42 -9.88 -0.02 -2.67 16 17 H 0.09 2.86 7.40 -2.39 -0.02 2.85 16 18 C 0.17 6.38 5.41 86.38 0.47 6.85 16 19 N -0.74 -38.04 5.12 -343.43 -1.76 -39.80 16 20 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 21 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 22 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 23 N -0.97 -60.63 13.06 21.65 0.28 -60.34 16 24 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 25 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 28 C 0.11 3.55 6.38 86.53 0.55 4.10 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.74 6.58 -2.39 -0.02 0.73 16 31 H 0.08 0.70 6.43 -2.38 -0.02 0.69 16 32 H 0.05 1.21 8.13 -2.38 -0.02 1.19 16 33 H 0.04 1.12 8.07 -2.39 -0.02 1.10 16 34 H 0.07 0.94 5.28 -2.39 -0.01 0.93 16 35 H 0.10 0.91 6.80 -2.39 -0.02 0.89 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.72 6.43 -2.39 -0.02 0.70 16 39 H 0.08 0.75 4.73 -2.39 -0.01 0.74 16 40 H 0.10 1.39 7.29 -2.38 -0.02 1.38 16 41 H 0.14 1.41 3.92 -2.39 -0.01 1.40 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.37 20.45 7.39 -92.71 -0.68 19.76 16 45 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.06 2.42 7.12 -2.39 -0.02 2.41 16 47 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -76.03 372.29 5.69 -70.34 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.32 Total: 23.93 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.27 Total: 8.98 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -4.13 Total: -118.93 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 2.26 Total: -8.97 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -76.03 5.69 -70.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700927770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.759 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds