Wall clock time and date at job start Sat Apr 11 2020 04:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52994 * 109.47185 * 299.99581 * 3 2 1 5 5 C 1.52997 * 109.47392 * 59.99914 * 3 2 1 6 6 C 1.50704 * 109.47053 * 179.97438 * 3 2 1 7 7 O 1.21282 * 119.99954 * 1.94667 * 6 3 2 8 8 N 1.34776 * 120.00065 * 181.94639 * 6 3 2 9 9 C 1.47480 * 127.03282 * 184.41889 * 8 6 3 10 10 C 1.54002 * 107.08419 * 154.51963 * 9 8 6 11 11 H 1.09002 * 110.32781 * 242.41127 * 10 9 8 12 12 C 1.53000 * 110.33197 * 120.29622 * 10 9 8 13 13 N 1.46510 * 109.46897 * 66.45268 * 12 10 9 14 14 C 1.36933 * 120.00068 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31627 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00225 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47091 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47498 * 120.00362 * 18 16 14 21 21 H 1.48505 * 109.47183 * 240.00558 * 18 16 14 22 22 C 1.54613 * 105.04471 * 1.30317 * 10 9 8 23 23 H 1.09010 * 110.74136 * 263.51610 * 22 10 9 24 24 C 1.52998 * 110.74436 * 140.37062 * 22 10 9 25 25 F 1.39896 * 109.47140 * 59.99661 * 24 22 10 26 26 F 1.39898 * 109.47742 * 180.02562 * 24 22 10 27 27 F 1.39902 * 109.47020 * 300.00162 * 24 22 10 28 28 C 1.48117 * 127.03148 * 4.10223 * 8 6 3 29 29 H 1.09000 * 109.46991 * 60.00236 * 1 2 3 30 30 H 1.09006 * 109.46998 * 300.00393 * 1 2 3 31 31 H 1.08997 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46963 * 119.99823 * 2 1 3 33 33 H 1.08993 * 109.47618 * 239.99479 * 2 1 3 34 34 H 1.09005 * 109.46922 * 67.50918 * 4 3 2 35 35 H 1.08994 * 109.47583 * 187.50890 * 4 3 2 36 36 H 1.09003 * 109.47465 * 307.51521 * 4 3 2 37 37 H 1.09000 * 109.47176 * 59.99963 * 5 3 2 38 38 H 1.08993 * 109.47517 * 179.97438 * 5 3 2 39 39 H 1.09001 * 109.47265 * 300.00123 * 5 3 2 40 40 H 1.09007 * 109.91153 * 273.87627 * 9 8 6 41 41 H 1.09000 * 109.91603 * 34.96179 * 9 8 6 42 42 H 1.08996 * 109.47528 * 186.44851 * 12 10 9 43 43 H 1.08997 * 109.47267 * 306.45986 * 12 10 9 44 44 H 0.96999 * 119.99840 * 0.02562 * 13 12 10 45 45 H 0.96992 * 120.00033 * 179.97438 * 17 16 14 46 46 H 1.08995 * 110.66058 * 337.77165 * 28 8 6 47 47 H 1.09000 * 110.66199 * 100.88564 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 1.5300 2.1638 1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1534 0.3928 -0.0346 8 7 4.2209 2.6090 0.0404 9 6 5.6816 2.7943 -0.0435 10 6 5.9271 4.2117 -0.5933 11 1 6.4476 4.1619 -1.5497 12 6 6.7360 5.0379 0.4086 13 7 8.0829 4.4744 0.5315 14 6 8.9921 5.0519 1.3771 15 1 8.7161 5.9224 1.9538 16 6 10.2679 4.5177 1.4940 17 7 10.6040 3.4565 0.7916 18 14 11.5080 5.3050 2.6480 19 1 10.8875 6.4768 3.3167 20 1 11.9289 4.3155 3.6721 21 1 12.6938 5.7492 1.8721 22 6 4.5177 4.8194 -0.7799 23 1 4.1823 4.7072 -1.8111 24 6 4.5032 6.2920 -0.3650 25 9 5.4114 7.0074 -1.1527 26 9 3.2178 6.8143 -0.5436 27 9 4.8672 6.4006 0.9815 28 6 3.6455 3.9676 0.1707 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 0.4484 2.2815 -1.1847 35 1 1.9989 3.1452 -1.3190 36 1 1.7796 1.5782 -2.1342 37 1 1.8933 1.6500 2.1392 38 1 1.8937 3.1913 1.2494 39 1 0.4400 2.1638 1.2492 40 1 6.1255 2.6985 0.9475 41 1 6.1120 2.0523 -0.7161 42 1 6.8037 6.0681 0.0593 43 1 6.2428 5.0152 1.3803 44 1 8.3307 3.6928 0.0134 45 1 11.4956 3.0835 0.8729 46 1 2.6044 3.9769 -0.1517 47 1 3.7348 4.3264 1.1961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700927771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:34 Heat of formation + Delta-G solvation = -168.504442 kcal Electronic energy + Delta-G solvation = -31769.287616 eV Core-core repulsion = 27151.784673 eV Total energy + Delta-G solvation = -4617.502943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.17478 -47.65173 -47.50991 -40.75869 -38.35983 -36.45141 -34.70782 -32.68060 -31.11927 -30.61716 -28.83878 -27.71603 -26.31867 -25.53561 -24.83177 -23.44725 -22.21985 -21.03167 -20.14837 -19.00802 -18.50255 -18.18973 -17.44210 -16.79353 -16.75340 -16.24726 -15.46441 -15.22742 -14.85394 -14.64411 -14.47798 -14.31767 -14.20763 -14.03969 -13.94311 -13.77262 -13.65440 -13.53928 -13.33191 -12.99137 -12.88854 -12.62942 -12.57480 -12.33092 -12.27912 -11.98506 -11.78630 -11.71676 -11.51167 -11.40333 -11.06346 -10.86809 -10.84385 -10.77539 -10.68627 -10.42512 -10.01206 -9.72199 -9.67291 -8.89435 -8.76588 -6.94988 -5.77310 -3.06856 2.54208 2.60299 2.95172 3.43974 3.49614 3.51944 3.67514 3.74367 3.97766 4.22522 4.38169 4.50610 4.56430 4.58018 4.64959 4.81166 4.87067 5.00239 5.05905 5.12331 5.18559 5.24004 5.29655 5.31413 5.46150 5.48342 5.53083 5.58803 5.67465 5.69825 5.75865 5.76368 5.88061 5.97518 6.04178 6.09139 6.17446 6.20340 6.30219 6.55281 6.68233 7.44670 7.70894 8.11127 8.40414 9.52221 10.06329 10.41517 11.45352 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003729 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.828149 B = 7507.743587 C = 9069.485834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.079 4.079 4 C -0.150 4.150 5 C -0.154 4.154 6 C 0.541 3.459 7 O -0.532 6.532 8 N -0.615 5.615 9 C 0.115 3.885 10 C -0.100 4.100 11 H 0.100 0.900 12 C 0.141 3.859 13 N -0.730 5.730 14 C -0.239 4.239 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.150 4.150 23 H 0.125 0.875 24 C 0.465 3.535 25 F -0.173 7.173 26 F -0.188 7.188 27 F -0.169 7.169 28 C 0.098 3.902 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.032 0.968 43 H 0.037 0.963 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.104 0.896 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.795 0.215 -4.461 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.082 4.082 4 C -0.207 4.207 5 C -0.211 4.211 6 C 0.330 3.670 7 O -0.408 6.408 8 N -0.349 5.349 9 C -0.007 4.007 10 C -0.120 4.120 11 H 0.118 0.882 12 C 0.014 3.986 13 N -0.374 5.374 14 C -0.370 4.370 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.171 4.171 23 H 0.143 0.857 24 C 0.410 3.590 25 F -0.154 7.154 26 F -0.170 7.170 27 F -0.151 7.151 28 C -0.025 4.025 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.428 -0.328 -4.337 23.828 hybrid contribution 0.990 0.518 0.445 1.203 sum -22.438 0.190 -3.892 22.774 Atomic orbital electron populations 1.21903 0.95459 1.01823 1.01981 1.21365 0.95385 0.93481 1.03518 1.20780 0.90986 0.98572 0.97840 1.22086 1.01928 1.00427 0.96224 1.22153 1.02033 1.00686 0.96237 1.20243 0.89347 0.81849 0.75555 1.90727 1.70227 1.30268 1.49550 1.48702 1.08167 1.05113 1.72921 1.22189 0.79427 0.95754 1.03347 1.22385 0.92293 0.94884 1.02414 0.88215 1.21419 0.87113 0.94882 0.95222 1.42320 1.07766 1.35190 1.52148 1.19229 0.92012 1.09005 1.16748 0.91070 1.24741 0.97660 0.98116 1.00323 1.69667 1.20101 1.23994 1.44245 0.86119 0.81512 0.78359 0.80216 1.20517 1.21850 1.21860 1.23575 1.00957 0.89118 1.03493 0.85735 1.20153 0.73214 0.90058 0.75564 1.93202 1.67270 1.80666 1.74290 1.93168 1.39663 1.88961 1.95183 1.93224 1.91156 1.96660 1.34043 1.22770 0.97852 0.82162 0.99720 0.92431 0.92362 0.92575 0.91225 0.91183 0.90970 0.91633 0.91815 0.91860 0.91483 0.90953 0.89415 0.89980 0.95073 0.94492 0.78250 0.93512 0.87847 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.21 37.16 0.34 -0.71 16 2 C -0.10 -0.95 4.28 -26.73 -0.11 -1.06 16 3 C -0.08 -0.75 0.52 -155.66 -0.08 -0.83 16 4 C -0.15 -1.12 7.65 37.15 0.28 -0.83 16 5 C -0.15 -1.23 7.85 37.16 0.29 -0.94 16 6 C 0.54 7.44 6.60 -10.98 -0.07 7.36 16 7 O -0.53 -9.54 16.35 5.56 0.09 -9.45 16 8 N -0.62 -8.00 3.27 -169.98 -0.56 -8.56 16 9 C 0.11 1.79 6.29 -2.98 -0.02 1.77 16 10 C -0.10 -1.48 2.85 -89.25 -0.25 -1.74 16 11 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 12 C 0.14 2.70 3.86 -4.04 -0.02 2.68 16 13 N -0.73 -18.00 5.37 -59.91 -0.32 -18.32 16 14 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 18 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C -0.15 -1.67 3.03 -88.93 -0.27 -1.94 16 23 H 0.12 1.10 8.14 -51.92 -0.42 0.67 16 24 C 0.46 5.73 2.40 37.16 0.09 5.82 16 25 F -0.17 -2.46 15.48 2.25 0.03 -2.42 16 26 F -0.19 -2.06 17.23 2.25 0.04 -2.02 16 27 F -0.17 -2.40 12.77 2.25 0.03 -2.38 16 28 C 0.10 1.01 4.08 -2.31 -0.01 1.00 16 29 H 0.06 0.34 6.60 -51.93 -0.34 0.00 16 30 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.75 8.12 -51.92 -0.42 0.33 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.07 0.41 6.85 -51.93 -0.36 0.05 16 35 H 0.06 0.46 5.07 -51.93 -0.26 0.20 16 36 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.50 4.83 -51.93 -0.25 0.25 16 39 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 40 H 0.09 1.61 7.61 -51.93 -0.40 1.21 16 41 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 42 H 0.03 0.62 5.40 -51.93 -0.28 0.34 16 43 H 0.04 0.73 6.68 -51.93 -0.35 0.38 16 44 H 0.38 9.92 7.51 -40.82 -0.31 9.62 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.10 0.79 3.86 -51.93 -0.20 0.59 16 47 H 0.09 0.94 7.24 -51.93 -0.38 0.56 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -32.55 364.15 -6.28 -38.82 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.71 Total: 5.38 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.07 Total: 3.34 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.15 Total: -54.27 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.10 Total: -6.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.55 -6.28 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700927771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.680 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds